Wall clock time and date at job start Tue Mar 31 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30256 * 125.61645 * 2 1 4 4 C 1.34476 * 108.69698 * 179.77519 * 3 2 1 5 5 C 1.34334 * 107.67223 * 0.39168 * 4 3 2 6 6 C 1.50698 * 126.44582 * 179.87840 * 5 4 3 7 7 S 1.81001 * 109.47052 * 89.70811 * 6 5 4 8 8 C 1.76202 * 99.99784 * 179.97438 * 7 6 5 9 9 N 1.32388 * 126.26021 * 359.97438 * 8 7 6 10 10 N 1.28516 * 110.20609 * 180.02562 * 9 8 7 11 11 C 1.33098 * 109.74302 * 0.02562 * 10 9 8 12 12 C 1.39776 * 126.56257 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99778 * 186.09356 * 12 11 10 14 14 C 1.40085 * 120.00068 * 6.08606 * 12 11 10 15 15 N 1.30808 * 119.99942 * 184.12744 * 14 12 11 16 16 Si 1.86799 * 119.99669 * 4.13543 * 14 12 11 17 17 H 1.48509 * 109.46950 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47355 * 299.99259 * 16 14 12 19 19 H 1.48501 * 109.47215 * 59.99928 * 16 14 12 20 20 N 1.36669 * 126.25987 * 180.30691 * 8 7 6 21 21 C 1.46505 * 127.15024 * 359.97438 * 20 8 7 22 22 O 1.33968 * 125.62176 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47430 * 269.97775 * 1 2 3 24 24 H 1.09001 * 109.47154 * 29.98167 * 1 2 3 25 25 H 1.08998 * 109.46611 * 149.97838 * 1 2 3 26 26 H 1.08005 * 126.16757 * 180.26906 * 4 3 2 27 27 H 1.09003 * 109.46642 * 329.70896 * 6 5 4 28 28 H 1.08993 * 109.47041 * 209.71224 * 6 5 4 29 29 H 0.97000 * 120.00392 * 354.84969 * 15 14 12 30 30 H 1.08991 * 109.47295 * 270.14314 * 21 20 8 31 31 H 1.08996 * 109.46934 * 30.14387 * 21 20 8 32 32 H 1.09000 * 109.46691 * 150.13746 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6675 0.0050 5 6 3.5698 -0.6757 -0.0006 6 6 4.7937 -1.5549 -0.0006 7 16 5.2836 -1.9070 1.7059 8 6 6.6947 -2.9216 1.4160 9 7 7.1788 -3.2704 0.2342 10 7 8.2152 -4.0160 0.3815 11 6 8.4610 -4.1931 1.6775 12 6 9.5020 -4.9427 2.2327 13 1 9.5463 -5.0971 3.3007 14 6 10.4877 -5.4939 1.4038 15 7 11.4159 -6.2621 1.9131 16 14 10.4765 -5.1317 -0.4287 17 1 11.6163 -5.8281 -1.0779 18 1 9.2015 -5.6107 -1.0203 19 1 10.6034 -3.6680 -0.6448 20 7 7.4858 -3.4977 2.3699 21 6 7.3344 -3.3974 3.8237 22 8 2.2873 -1.0890 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3632 -0.8898 -0.5142 26 1 4.4157 1.3162 0.0104 27 1 5.6081 -1.0439 -0.5143 28 1 4.5696 -2.4895 -0.5146 29 1 11.4667 -6.3901 2.8732 30 1 7.8956 -2.5374 4.1889 31 1 6.2800 -3.2751 4.0715 32 1 7.7147 -4.3052 4.2920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334310992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:44 Heat of formation + Delta-G solvation = 54.787887 kcal Electronic energy + Delta-G solvation = -18520.887928 eV Core-core repulsion = 15416.287411 eV Total energy + Delta-G solvation = -3104.600517 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.44086 -42.88424 -35.96340 -35.87310 -35.45508 -34.24736 -32.06455 -31.14188 -28.48239 -27.40904 -26.52525 -23.51890 -23.33143 -22.36442 -21.95247 -20.21850 -18.68472 -18.05035 -17.75078 -17.04904 -16.90870 -15.95563 -15.82760 -15.60066 -15.46717 -14.95473 -14.63441 -14.39926 -14.22123 -13.89750 -13.83104 -13.56631 -13.25906 -13.12936 -12.88268 -12.38585 -12.13099 -11.87735 -11.70518 -11.57581 -11.43305 -10.96017 -10.60604 -10.40674 -9.76363 -9.50570 -8.79713 -6.89140 -0.25214 0.57911 0.94951 1.04255 1.53477 1.54448 1.58134 1.66490 1.93390 2.10218 2.18555 2.40590 3.02562 3.05921 3.49842 3.81718 3.90851 3.98945 4.31611 4.35738 4.43745 4.53179 4.57512 4.62133 4.65549 4.66991 4.87402 5.00303 5.19688 5.33412 5.35395 5.64829 5.98428 6.36674 6.53924 6.60771 7.90788 8.10960 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.039059 B = 0.003837 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.699341 B = 7295.492004 C = 7734.978259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.201 3.799 3 N -0.512 5.512 4 C -0.008 4.008 5 C -0.053 4.053 6 C -0.008 4.008 7 S 0.019 5.981 8 C 0.077 3.923 9 N -0.306 5.306 10 N -0.446 5.446 11 C 0.327 3.673 12 C -0.508 4.508 13 H 0.084 0.916 14 C 0.042 3.958 15 N -0.822 5.822 16 Si 1.144 2.856 17 H -0.298 1.298 18 H -0.277 1.277 19 H -0.292 1.292 20 N -0.514 5.514 21 C 0.092 3.908 22 O -0.209 6.209 23 H 0.112 0.888 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.206 0.794 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.287 0.713 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.335 11.174 1.033 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.006 4.006 3 N -0.242 5.242 4 C -0.149 4.149 5 C -0.107 4.107 6 C -0.157 4.157 7 S 0.248 5.752 8 C -0.298 4.298 9 N -0.148 5.148 10 N -0.295 5.295 11 C 0.080 3.920 12 C -0.549 4.549 13 H 0.103 0.897 14 C -0.178 4.178 15 N -0.447 5.447 16 Si 0.973 3.027 17 H -0.227 1.227 18 H -0.203 1.203 19 H -0.220 1.220 20 N -0.214 5.214 21 C -0.050 4.050 22 O -0.097 6.097 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.125 0.875 26 H 0.223 0.777 27 H 0.149 0.851 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.138 11.555 -0.745 21.519 hybrid contribution 0.527 -0.989 2.068 2.352 sum -17.611 10.566 1.323 20.581 Atomic orbital electron populations 1.20618 0.77739 1.06745 1.06427 1.27470 0.98153 0.77835 0.97148 1.70551 1.02252 1.30960 1.20463 1.23498 0.95913 0.92630 1.02901 1.22272 0.82793 0.94684 1.10979 1.21556 0.94180 1.02700 0.97227 1.84792 1.23185 1.57685 1.09537 1.26438 1.04396 1.10400 0.88588 1.74180 1.07306 1.12774 1.20566 1.73879 1.16105 1.25940 1.13585 1.21787 0.90087 0.92411 0.87674 1.19420 1.07108 1.31451 0.96892 0.89745 1.27775 0.90105 0.89261 1.10659 1.70665 1.30657 1.26488 1.16867 0.82227 0.74774 0.76274 0.69427 1.22666 1.20339 1.21969 1.46183 1.24714 1.42373 1.08143 1.21922 1.03985 1.03964 0.75164 1.84403 1.16494 1.38572 1.70229 0.86927 0.86581 0.87502 0.77678 0.85096 0.87759 0.90202 0.90140 0.88410 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 71.24 0.75 0.21 16 2 C 0.20 4.12 8.34 88.34 0.74 4.85 16 3 N -0.51 -12.31 11.29 -303.82 -3.43 -15.75 16 4 C -0.01 -0.19 11.80 83.40 0.98 0.80 16 5 C -0.05 -1.34 6.64 24.79 0.16 -1.18 16 6 C -0.01 -0.23 5.77 71.24 0.41 0.18 16 7 S 0.02 0.61 21.77 -56.49 -1.23 -0.62 16 8 C 0.08 3.30 8.09 179.18 1.45 4.75 16 9 N -0.31 -15.25 11.62 -56.17 -0.65 -15.90 16 10 N -0.45 -24.67 7.52 -55.02 -0.41 -25.09 16 11 C 0.33 17.28 7.27 133.23 0.97 18.24 16 12 C -0.51 -27.20 9.50 23.09 0.22 -26.98 16 13 H 0.08 4.37 7.46 -2.91 -0.02 4.35 16 14 C 0.04 2.29 5.52 85.29 0.47 2.76 16 15 N -0.82 -44.00 13.65 21.86 0.30 -43.70 16 16 Si 1.14 57.54 25.90 68.60 1.78 59.32 16 17 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.28 -14.52 6.76 99.48 0.67 -13.85 16 19 H -0.29 -15.10 7.11 99.48 0.71 -14.40 16 20 N -0.51 -22.87 3.26 -543.63 -1.77 -24.64 16 21 C 0.09 2.99 10.89 127.77 1.39 4.39 16 22 O -0.21 -5.19 10.77 -3.68 -0.04 -5.23 16 23 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.21 3.83 8.06 -2.91 -0.02 3.80 16 27 H 0.13 3.53 8.14 -2.39 -0.02 3.51 16 28 H 0.10 3.10 8.14 -2.40 -0.02 3.08 16 29 H 0.29 14.59 8.72 -92.71 -0.81 13.78 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 2.63 7.85 -2.39 -0.02 2.61 16 32 H 0.08 2.69 7.48 -2.39 -0.02 2.67 16 Total: -1.00 -70.18 299.51 3.16 -67.02 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: 1.08 Total: -3.44 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 7.54 Total: 8.03 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -5.97 Total: -125.07 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.04 Total: -5.23 kcal Atomic # 14 Polarization: 57.54 SS G_CDS: 1.78 Total: 59.32 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -1.23 Total: -0.62 kcal Total: -70.18 3.16 -67.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334310992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.806 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds