Wall clock time and date at job start Tue Mar 31 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35448 * 126.77981 * 2 1 4 4 C 1.41380 * 103.98714 * 180.09739 * 3 2 1 5 5 C 1.50698 * 126.80285 * 179.88702 * 4 3 2 6 6 S 1.81001 * 109.47052 * 269.70622 * 5 4 3 7 7 C 1.76202 * 99.99784 * 179.97438 * 6 5 4 8 8 N 1.32388 * 126.26021 * 359.97438 * 7 6 5 9 9 N 1.28516 * 110.20609 * 180.02562 * 8 7 6 10 10 C 1.33098 * 109.74302 * 0.02562 * 9 8 7 11 11 C 1.39776 * 126.56257 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99778 * 186.09356 * 11 10 9 13 13 C 1.40085 * 120.00068 * 6.08606 * 11 10 9 14 14 N 1.30808 * 119.99942 * 184.12744 * 13 11 10 15 15 Si 1.86799 * 119.99669 * 4.13543 * 13 11 10 16 16 H 1.48509 * 109.46950 * 179.97438 * 15 13 11 17 17 H 1.48495 * 109.47355 * 299.99259 * 15 13 11 18 18 H 1.48501 * 109.47215 * 59.99928 * 15 13 11 19 19 N 1.36669 * 126.25987 * 180.30691 * 7 6 5 20 20 C 1.46505 * 127.15024 * 359.97438 * 19 7 6 21 21 N 1.30173 * 106.39362 * 359.62299 * 4 3 2 22 22 O 1.20927 * 111.60947 * 0.24273 * 21 4 3 23 23 H 1.09001 * 109.47346 * 180.30391 * 1 2 3 24 24 H 1.08998 * 109.47265 * 300.30653 * 1 2 3 25 25 H 1.09002 * 109.47076 * 60.30028 * 1 2 3 26 26 H 1.07995 * 128.00854 * 359.95768 * 3 2 1 27 27 H 1.09003 * 109.46642 * 149.70708 * 5 4 3 28 28 H 1.08993 * 109.47041 * 29.71036 * 5 4 3 29 29 H 0.97000 * 120.00392 * 354.84969 * 14 13 11 30 30 H 1.08991 * 109.47295 * 270.14314 * 20 19 7 31 31 H 1.08996 * 109.46934 * 30.14387 * 20 19 7 32 32 H 1.09000 * 109.46691 * 150.13746 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9211 1.2998 -0.0057 6 16 5.4423 1.5963 -1.7135 7 6 6.9407 2.4781 -1.4274 8 7 7.4543 2.7870 -0.2470 9 7 8.5550 3.4331 -0.3972 10 6 8.8169 3.5800 -1.6938 11 6 9.9228 4.2275 -2.2518 12 1 9.9817 4.3715 -3.3206 13 6 10.9546 4.6899 -1.4248 14 7 11.9499 5.3666 -1.9372 15 14 10.9091 4.3400 0.4095 16 1 12.1078 4.9318 1.0562 17 1 9.6833 4.9377 0.9972 18 1 10.9004 2.8720 0.6334 19 7 7.7821 2.9737 -2.3836 20 6 7.6228 2.8800 -3.8369 21 7 3.4763 -0.7564 0.0048 22 8 2.3094 -1.0737 0.0062 23 1 -0.3634 -1.0276 0.0055 24 1 -0.3634 0.5186 0.8872 25 1 -0.3633 0.5092 -0.8927 26 1 2.0346 2.1270 -0.0006 27 1 5.6846 0.7188 0.5115 28 1 4.7838 2.2539 0.5031 29 1 12.0129 5.4842 -2.8980 30 1 8.1026 1.9701 -4.1971 31 1 6.5618 2.8541 -4.0852 32 1 8.0854 3.7464 -4.3097 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344416434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:49 Heat of formation + Delta-G solvation = 113.298188 kcal Electronic energy + Delta-G solvation = -18514.239272 eV Core-core repulsion = 15412.175952 eV Total energy + Delta-G solvation = -3102.063320 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.08681 -40.97803 -34.97853 -33.97235 -33.65821 -33.56423 -30.12688 -28.85620 -28.00356 -26.76921 -25.34299 -23.24612 -21.52896 -20.67367 -19.94795 -18.23965 -17.84994 -17.40518 -16.65977 -15.37832 -15.13137 -14.84883 -14.32402 -14.17786 -13.80252 -13.57291 -13.44554 -13.23049 -13.01779 -12.73330 -12.61431 -12.48035 -11.99471 -11.29537 -11.22327 -10.94715 -10.74113 -10.07094 -9.86473 -9.60501 -9.47559 -9.42655 -9.14320 -8.72419 -8.43449 -7.46210 -7.16607 -4.88530 1.16788 1.50307 2.31916 2.64034 2.86032 2.93892 3.54851 3.57488 3.83584 3.96274 4.02038 4.11435 4.24191 4.38922 4.82067 4.95040 5.05793 5.06990 5.07352 5.32805 5.34405 5.40712 5.62702 5.69596 5.71034 5.87756 5.91837 6.32376 6.60112 7.07341 7.36227 7.47873 8.00905 8.13313 8.30690 8.51460 9.92508 10.06047 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.039385 B = 0.003816 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.755790 B = 7335.242033 C = 7781.705659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.219 4.219 4 C 0.034 3.966 5 C -0.021 4.021 6 S -0.020 6.020 7 C 0.062 3.938 8 N -0.269 5.269 9 N -0.415 5.415 10 C 0.346 3.654 11 C -0.491 4.491 12 H 0.084 0.916 13 C 0.065 3.935 14 N -0.806 5.806 15 Si 1.112 2.888 16 H -0.311 1.311 17 H -0.260 1.260 18 H -0.280 1.280 19 N -0.512 5.512 20 C 0.101 3.899 21 N -0.350 5.350 22 O 0.105 5.895 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.175 0.825 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.284 0.716 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.628 -7.247 -0.452 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.241 4.241 4 C -0.125 4.125 5 C -0.170 4.170 6 S 0.206 5.794 7 C -0.312 4.312 8 N -0.112 5.112 9 N -0.265 5.265 10 C 0.103 3.897 11 C -0.532 4.532 12 H 0.102 0.898 13 C -0.158 4.158 14 N -0.430 5.430 15 Si 0.940 3.060 16 H -0.241 1.241 17 H -0.186 1.186 18 H -0.207 1.207 19 N -0.213 5.213 20 C -0.043 4.043 21 N -0.053 5.053 22 O 0.036 5.964 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.192 0.808 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.325 -8.162 1.373 20.108 hybrid contribution -0.499 0.880 -2.188 2.410 sum -18.824 -7.283 -0.815 20.200 Atomic orbital electron populations 1.20328 0.83931 1.04613 1.04133 1.24492 0.96408 0.86127 1.03169 1.22420 0.90931 1.01320 1.09443 1.22796 0.96030 0.89915 1.03781 1.21489 0.93980 1.03188 0.98323 1.84738 1.17908 1.68702 1.08042 1.25394 1.01926 1.14618 0.89241 1.74255 1.05608 1.12164 1.19199 1.73996 1.12264 1.27704 1.12529 1.21719 0.88500 0.92080 0.87386 1.19409 1.01542 1.35457 0.96765 0.89830 1.27362 0.90037 0.88961 1.09464 1.70674 1.29092 1.26784 1.16430 0.82713 0.74629 0.78057 0.70587 1.24061 1.18552 1.20665 1.45816 1.20798 1.48630 1.06044 1.21551 1.01810 1.02725 0.78227 1.73900 0.96741 1.16082 1.18571 1.84848 1.11244 1.33187 1.67159 0.89918 0.89165 0.89147 0.80800 0.87163 0.86661 0.90515 0.92085 0.91179 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.45 36.01 0.38 0.04 16 2 C -0.04 -0.36 7.49 -35.30 -0.26 -0.63 16 3 C -0.22 -2.38 11.06 -39.38 -0.44 -2.81 16 4 C 0.03 0.48 6.58 -82.10 -0.54 -0.06 16 5 C -0.02 -0.33 5.81 36.00 0.21 -0.12 16 6 S -0.02 -0.35 21.77 -107.50 -2.34 -2.69 16 7 C 0.06 1.42 8.09 -87.28 -0.71 0.71 16 8 N -0.27 -6.91 11.62 30.89 0.36 -6.55 16 9 N -0.41 -11.59 7.52 31.26 0.23 -11.35 16 10 C 0.35 9.28 7.27 -154.81 -1.13 8.16 16 11 C -0.49 -13.21 9.50 -38.31 -0.36 -13.57 16 12 H 0.08 2.17 7.46 -52.49 -0.39 1.78 16 13 C 0.06 1.75 5.52 -17.29 -0.10 1.65 16 14 N -0.81 -21.66 13.65 55.56 0.76 -20.91 16 15 Si 1.11 28.15 25.90 -169.99 -4.40 23.75 16 16 H -0.31 -7.54 7.11 56.52 0.40 -7.14 16 17 H -0.26 -6.76 6.76 56.52 0.38 -6.38 16 18 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 19 N -0.51 -11.95 3.26 -123.18 -0.40 -12.35 16 20 C 0.10 1.81 10.89 59.85 0.65 2.46 16 21 N -0.35 -5.20 12.07 33.42 0.40 -4.80 16 22 O 0.11 1.30 11.20 17.16 0.19 1.49 16 23 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.11 1.88 8.14 -51.91 -0.42 1.46 16 28 H 0.12 1.76 8.14 -51.92 -0.42 1.34 16 29 H 0.28 7.23 8.72 -40.82 -0.36 6.87 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 32 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -32.80 299.03 -6.30 -39.10 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: -3.32 Total: -6.02 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.29 Total: -4.17 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 1.35 Total: -55.96 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.49 kcal Atomic # 14 Polarization: 28.15 SS G_CDS: -4.40 Total: 23.75 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.34 Total: -2.69 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.80 -6.30 -39.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344416434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.398 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds