Wall clock time and date at job start Tue Mar 31 2020 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29863 * 125.54986 * 2 1 4 4 N 1.26254 * 117.78743 * 179.97438 * 3 2 1 5 5 C 1.30752 * 116.24954 * 359.97438 * 4 3 2 6 6 C 1.47324 * 126.18587 * 179.97438 * 5 4 3 7 7 O 1.21605 * 119.99642 * 173.95663 * 6 5 4 8 8 N 1.34774 * 119.99807 * 353.96720 * 6 5 4 9 9 C 1.46498 * 120.00212 * 4.29711 * 8 6 5 10 10 C 1.50700 * 109.46976 * 83.49957 * 9 8 6 11 11 H 1.07998 * 120.00113 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99932 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99937 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00038 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47327 * 90.00075 * 14 12 10 16 16 H 1.48498 * 109.47255 * 210.00275 * 14 12 10 17 17 H 1.48504 * 109.46896 * 330.00165 * 14 12 10 18 18 C 1.46505 * 119.99469 * 184.30502 * 8 6 5 19 19 C 1.52994 * 109.47258 * 94.90210 * 18 8 6 20 20 C 1.47203 * 109.47198 * 179.97438 * 19 18 8 21 21 N 9.36044 * 166.10029 * 235.80547 * 2 1 3 22 22 S 1.71277 * 125.54303 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46745 * 90.02102 * 1 2 3 24 24 H 1.08997 * 109.47193 * 210.02351 * 1 2 3 25 25 H 1.09001 * 109.46763 * 330.02760 * 1 2 3 26 26 H 1.09000 * 109.47192 * 203.49681 * 9 8 6 27 27 H 1.08999 * 109.47019 * 323.49572 * 9 8 6 28 28 H 0.96997 * 119.99695 * 179.97438 * 13 12 10 29 29 H 1.09005 * 109.46656 * 214.89597 * 18 8 6 30 30 H 1.08997 * 109.47009 * 334.89924 * 18 8 6 31 31 H 1.09010 * 109.47240 * 299.99420 * 19 18 8 32 32 H 1.09001 * 109.47654 * 59.99259 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2620 1.0566 0.0000 4 7 3.5130 0.8860 0.0005 5 6 3.9276 -0.3540 0.0015 6 6 5.3311 -0.8019 0.0017 7 8 5.5919 -1.9844 0.1136 8 7 6.3259 0.0990 -0.1218 9 6 6.0171 1.5305 -0.1616 10 6 5.8710 2.0521 1.2446 11 1 5.9953 1.3840 2.0840 12 6 5.5776 3.3820 1.4596 13 7 5.4495 3.8371 2.6869 14 14 5.3619 4.5374 0.0078 15 1 3.9368 4.5472 -0.4098 16 1 5.7717 5.9093 0.4017 17 1 6.2058 4.0743 -1.1230 18 6 7.7161 -0.3535 -0.2165 19 6 8.1190 -0.4591 -1.6887 20 6 9.5160 -0.9131 -1.7838 21 7 10.5933 -1.2637 -1.8599 22 16 2.5027 -1.3936 0.0006 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5134 26 1 6.8247 2.0626 -0.6644 27 1 5.0855 1.6862 -0.7056 28 1 5.2435 4.7728 2.8381 29 1 8.3661 0.3618 0.2876 30 1 7.8135 -1.3300 0.2578 31 1 7.4690 -1.1744 -2.1929 32 1 8.0215 0.5174 -2.1631 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347375830.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:52 Heat of formation + Delta-G solvation = 49.924884 kcal Electronic energy + Delta-G solvation = -19282.500731 eV Core-core repulsion = 16177.689339 eV Total energy + Delta-G solvation = -3104.811393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.23864 -40.75568 -37.99186 -36.94430 -34.67321 -34.18674 -32.66253 -30.24229 -29.61578 -26.78443 -25.32078 -24.56794 -22.57365 -20.23276 -19.97929 -19.18099 -18.44171 -17.89691 -17.23772 -16.94310 -16.19831 -16.03084 -15.67398 -15.37824 -14.87002 -14.62880 -14.44827 -14.30353 -13.79410 -13.71687 -13.61951 -13.42884 -13.39394 -13.06242 -12.68084 -12.45318 -12.05315 -11.88139 -11.79617 -11.59122 -11.04472 -11.03193 -10.79523 -10.67422 -10.55129 -9.63343 -8.19056 -6.20902 -0.93756 -0.22334 0.27621 1.16531 1.43346 1.51912 1.53102 1.63968 1.80071 1.95386 2.15495 2.45361 2.92379 3.18029 3.21610 3.48251 3.88490 4.04211 4.08501 4.20238 4.52480 4.66935 4.72611 4.73918 4.81771 4.97307 5.10245 5.19483 5.52869 5.61735 6.12406 6.40393 6.55771 6.77733 6.90938 7.42384 7.53860 8.98062 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.008073 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.605571 B = 3467.547419 C = 5298.016749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.004 3.996 3 N -0.318 5.318 4 N -0.190 5.190 5 C -0.083 4.083 6 C 0.601 3.399 7 O -0.560 6.560 8 N -0.564 5.564 9 C 0.202 3.798 10 C -0.509 4.509 11 H 0.023 0.977 12 C 0.026 3.974 13 N -0.952 5.952 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.293 1.293 17 H -0.227 1.227 18 C 0.116 3.884 19 C -0.031 4.031 20 C 0.246 3.754 21 N -0.488 5.488 22 S 0.245 5.755 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.262 0.738 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 -8.847 -10.946 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.272 4.272 3 N -0.160 5.160 4 N -0.032 5.032 5 C -0.362 4.362 6 C 0.385 3.615 7 O -0.440 6.440 8 N -0.293 5.293 9 C 0.080 3.920 10 C -0.547 4.547 11 H 0.041 0.959 12 C -0.171 4.171 13 N -0.593 5.593 14 Si 0.754 3.246 15 H -0.200 1.200 16 H -0.219 1.219 17 H -0.149 1.149 18 C -0.008 4.008 19 C -0.072 4.072 20 C -0.072 4.072 21 N -0.166 5.166 22 S 0.488 5.512 23 H 0.138 0.862 24 H 0.133 0.867 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.696 -9.533 -10.920 16.412 hybrid contribution -0.351 1.233 0.432 1.353 sum -8.047 -8.299 -10.487 15.608 Atomic orbital electron populations 1.20767 0.80243 1.06283 1.06419 1.30377 1.06230 0.91671 0.98917 1.71449 0.97807 1.28924 1.17799 1.72452 1.05195 1.16888 1.08703 1.29650 1.01653 0.93215 1.11649 1.16637 0.82647 0.85157 0.77077 1.90771 1.83722 1.16372 1.53124 1.47703 1.05687 1.07986 1.67902 1.20208 0.99133 0.75962 0.96683 1.21244 1.47380 0.94305 0.91807 0.95866 1.25541 0.93972 0.99759 0.97841 1.70054 1.51034 1.15661 1.22517 0.85971 0.79766 0.77792 0.81029 1.19958 1.21939 1.14944 1.21452 0.80982 1.02629 0.95702 1.19712 0.83208 1.05800 0.98451 1.29100 0.94609 0.91638 0.91823 1.81214 1.14017 1.11410 1.09958 1.84198 0.94553 1.08555 1.63869 0.86227 0.86689 0.88568 0.92170 0.91363 0.92887 0.88742 0.89305 0.85304 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.48 71.24 0.75 -0.34 16 2 C 0.00 0.10 7.53 88.40 0.67 0.77 16 3 N -0.32 -11.85 11.59 -50.60 -0.59 -12.43 16 4 N -0.19 -7.85 7.50 -49.69 -0.37 -8.23 16 5 C -0.08 -3.05 7.28 87.25 0.64 -2.41 16 6 C 0.60 22.49 7.60 86.63 0.66 23.15 16 7 O -0.56 -21.33 16.47 -4.05 -0.07 -21.40 16 8 N -0.56 -20.23 2.48 -830.17 -2.05 -22.29 16 9 C 0.20 8.29 3.85 85.63 0.33 8.62 16 10 C -0.51 -27.02 9.00 25.60 0.23 -26.79 16 11 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 12 C 0.03 1.47 5.47 84.65 0.46 1.93 16 13 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 14 Si 0.93 41.98 27.47 68.60 1.88 43.87 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.23 -8.69 6.54 99.48 0.65 -8.04 16 18 C 0.12 3.28 5.42 86.38 0.47 3.75 16 19 C -0.03 -0.62 6.02 28.79 0.17 -0.44 16 20 C 0.25 5.96 15.43 89.45 1.38 7.34 16 21 N -0.49 -14.69 18.53 20.00 0.37 -14.32 16 22 S 0.25 6.34 23.13 -56.49 -1.31 5.03 16 23 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 2.20 7.08 -2.39 -0.02 2.19 16 27 H 0.07 2.88 4.76 -2.39 -0.01 2.87 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.09 2.69 8.11 -2.38 -0.02 2.67 16 30 H 0.09 2.58 7.23 -2.39 -0.02 2.56 16 31 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -75.85 304.24 5.03 -70.82 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.11 Total: 1.48 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 5.75 Total: 15.58 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -2.34 Total: -115.38 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.07 Total: -21.40 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.87 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.31 Total: 5.03 kcal Total: -75.85 5.03 -70.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347375830.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.745 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds