Wall clock time and date at job start Tue Mar 31 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21298 * 120.00165 * 2 1 4 4 C 1.46796 * 119.99905 * 180.02562 * 2 1 3 5 5 N 1.30796 * 125.26355 * 0.02562 * 4 2 1 6 6 C 1.29930 * 117.48861 * 179.68089 * 5 4 2 7 7 C 1.37393 * 115.22871 * 0.53639 * 6 5 4 8 8 C 1.46996 * 126.05650 * 179.77109 * 7 6 5 9 9 O 1.21687 * 119.99961 * 353.55656 * 8 7 6 10 10 N 1.34768 * 120.00321 * 173.55860 * 8 7 6 11 11 C 1.36587 * 120.00482 * 173.45072 * 10 8 7 12 12 H 1.08000 * 120.00360 * 228.16735 * 11 10 8 13 13 C 1.39240 * 119.99479 * 48.16987 * 11 10 8 14 14 N 1.31247 * 119.99808 * 191.78004 * 13 11 10 15 15 Si 1.86798 * 120.00255 * 11.77593 * 13 11 10 16 16 H 1.48503 * 109.47024 * 264.06522 * 15 13 11 17 17 H 1.48498 * 109.47385 * 24.06707 * 15 13 11 18 18 H 1.48498 * 109.47102 * 144.06995 * 15 13 11 19 19 C 1.46506 * 119.99948 * 353.45158 * 10 8 7 20 20 C 1.52999 * 117.50245 * 182.46108 * 19 10 8 21 21 C 1.52999 * 117.49861 * 113.79631 * 19 10 8 22 22 S 1.76127 * 125.25723 * 179.97438 * 4 2 1 23 23 H 1.09005 * 109.46967 * 269.99860 * 1 2 3 24 24 H 1.09004 * 109.47044 * 29.99469 * 1 2 3 25 25 H 1.09001 * 109.47023 * 149.99904 * 1 2 3 26 26 H 1.08001 * 122.38016 * 180.33057 * 6 5 4 27 27 H 0.96995 * 119.99957 * 180.02562 * 14 13 11 28 28 H 1.09001 * 115.54614 * 328.13249 * 19 10 8 29 29 H 1.09001 * 117.49606 * 359.97438 * 20 19 10 30 30 H 1.08997 * 117.50299 * 145.01941 * 20 19 10 31 31 H 1.08997 * 117.49820 * 214.97739 * 21 19 10 32 32 H 1.08998 * 117.49964 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2713 -0.0006 5 7 1.6936 -2.4592 -0.0016 6 6 2.4895 -3.4862 -0.0084 7 6 3.8306 -3.1879 -0.0021 8 6 4.9333 -4.1600 -0.0028 9 8 4.6967 -5.3484 0.1088 10 7 6.2062 -3.7351 -0.1271 11 6 7.2378 -4.6203 0.0059 12 1 8.0774 -4.3797 0.6412 13 6 7.2070 -5.8330 -0.6776 14 7 8.0691 -6.7766 -0.3792 15 14 5.9386 -6.1170 -2.0193 16 1 4.7697 -6.8356 -1.4513 17 1 5.4972 -4.8097 -2.5680 18 1 6.5406 -6.9318 -3.1051 19 6 6.4835 -2.3236 -0.4050 20 6 7.9458 -1.9144 -0.5921 21 6 7.1962 -1.5164 0.6819 22 16 3.9948 -1.4327 -0.0013 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 2.1228 -4.5021 -0.0150 27 1 8.0479 -7.6212 -0.8556 28 1 5.7354 -1.8071 -1.0064 29 1 8.7016 -2.6953 -0.5081 30 1 8.1598 -1.1284 -1.3164 31 1 6.9174 -0.4688 0.7951 32 1 7.4592 -2.0356 1.6035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356457654.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:32 Heat of formation + Delta-G solvation = 26.000976 kcal Electronic energy + Delta-G solvation = -19543.884933 eV Core-core repulsion = 16405.743371 eV Total energy + Delta-G solvation = -3138.141562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.86270 -39.44838 -38.50703 -36.64800 -33.33193 -31.92796 -31.28749 -29.47337 -26.69258 -25.09787 -22.43894 -21.94772 -21.74840 -20.65241 -18.85612 -18.23429 -16.89125 -16.53764 -16.08002 -15.48413 -15.20543 -14.87352 -14.78971 -14.28950 -14.00583 -13.59527 -13.49975 -13.30357 -12.71442 -12.43529 -12.26515 -11.78674 -11.43294 -11.36503 -11.15521 -10.63379 -10.54792 -10.40081 -10.26631 -10.06129 -9.48730 -9.17911 -8.97818 -8.86358 -8.59988 -7.81350 -6.50419 -4.31242 -0.08462 1.32083 1.77051 1.84237 2.94743 3.28269 3.34028 3.51860 3.73336 3.78094 3.96106 4.23305 4.38381 4.64586 4.81227 5.02484 5.10736 5.17591 5.29440 5.31012 5.42009 5.47755 5.49723 5.81559 5.95329 6.02613 6.29386 6.36929 6.63186 7.13806 7.47433 7.61282 7.75349 8.35642 8.50679 9.01267 9.38583 10.50520 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.006559 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.664694 B = 4267.869082 C = 5077.376974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.441 3.559 3 O -0.455 6.455 4 C -0.097 4.097 5 N -0.416 5.416 6 C 0.064 3.936 7 C -0.215 4.215 8 C 0.507 3.493 9 O -0.528 6.528 10 N -0.409 5.409 11 C -0.329 4.329 12 H 0.106 0.894 13 C 0.088 3.912 14 N -0.846 5.846 15 Si 0.931 3.069 16 H -0.253 1.253 17 H -0.284 1.284 18 H -0.307 1.307 19 C 0.030 3.970 20 C -0.153 4.153 21 C -0.188 4.188 22 S 0.223 5.777 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.187 0.813 27 H 0.280 0.720 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 11.887 -0.692 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.316 3.684 3 O -0.329 6.329 4 C -0.364 4.364 5 N -0.134 5.134 6 C -0.097 4.097 7 C -0.342 4.342 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.127 5.127 11 C -0.457 4.457 12 H 0.123 0.877 13 C -0.125 4.125 14 N -0.479 5.479 15 Si 0.762 3.238 16 H -0.179 1.179 17 H -0.209 1.209 18 H -0.237 1.237 19 C -0.078 4.078 20 C -0.191 4.191 21 C -0.227 4.227 22 S 0.482 5.518 23 H 0.118 0.882 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.204 0.796 27 H 0.090 0.910 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.875 12.481 -0.630 14.771 hybrid contribution -0.852 -1.197 -0.640 1.602 sum -8.727 11.284 -1.269 14.322 Atomic orbital electron populations 1.22058 0.91730 1.05191 1.05041 1.21568 0.91825 0.84623 0.70376 1.90586 1.72250 1.32849 1.37170 1.28541 0.97317 0.97153 1.13430 1.66177 1.38810 0.97398 1.11043 1.22209 0.86920 0.99038 1.01567 1.27165 1.00177 0.96739 1.10087 1.16923 0.81848 0.87244 0.84226 1.90622 1.82026 1.14845 1.53787 1.42996 1.04789 1.05830 1.59122 1.18893 1.00907 0.97067 1.28816 0.87684 1.25559 0.95820 0.94690 0.96403 1.69600 1.35161 1.04709 1.38411 0.85904 0.81532 0.78609 0.77733 1.17891 1.20942 1.23745 1.22210 0.97042 0.85229 1.03281 1.23205 0.93988 1.02967 0.98901 1.23395 1.04655 0.99850 0.94762 1.85381 1.03403 1.00279 1.62766 0.88230 0.89361 0.88618 0.79571 0.90990 0.87017 0.86307 0.88651 0.88564 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 10.13 36.01 0.36 -1.31 16 2 C 0.44 5.86 7.24 -30.85 -0.22 5.64 16 3 O -0.46 -6.94 17.67 5.54 0.10 -6.84 16 4 C -0.10 -1.48 7.38 -14.53 -0.11 -1.59 16 5 N -0.42 -6.71 10.06 -10.99 -0.11 -6.82 16 6 C 0.06 1.14 11.09 -18.66 -0.21 0.93 16 7 C -0.22 -4.22 6.34 -36.34 -0.23 -4.45 16 8 C 0.51 12.02 5.97 -12.72 -0.08 11.95 16 9 O -0.53 -14.18 12.06 5.20 0.06 -14.12 16 10 N -0.41 -9.50 2.42 -109.10 -0.26 -9.76 16 11 C -0.33 -8.62 8.32 -15.06 -0.13 -8.74 16 12 H 0.11 2.82 7.57 -52.49 -0.40 2.42 16 13 C 0.09 2.42 5.05 -17.43 -0.09 2.33 16 14 N -0.85 -24.04 13.95 55.51 0.77 -23.27 16 15 Si 0.93 23.85 24.45 -169.99 -4.16 19.69 16 16 H -0.25 -6.77 6.40 56.52 0.36 -6.41 16 17 H -0.28 -7.15 7.01 56.52 0.40 -6.75 16 18 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 19 C 0.03 0.54 4.51 -67.93 -0.31 0.24 16 20 C -0.15 -2.45 9.81 -26.69 -0.26 -2.71 16 21 C -0.19 -2.89 10.07 -26.69 -0.27 -3.16 16 22 S 0.22 3.59 18.17 -107.50 -1.95 1.64 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.10 0.87 7.86 -51.93 -0.41 0.46 16 26 H 0.19 3.15 8.06 -52.49 -0.42 2.73 16 27 H 0.28 7.46 8.30 -40.82 -0.34 7.13 16 28 H 0.11 1.92 5.04 -26.62 -0.13 1.79 16 29 H 0.12 2.13 6.79 -51.93 -0.35 1.78 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 LS Contribution 289.55 15.07 4.36 4.36 Total: -1.00 -30.90 289.55 -5.73 -36.63 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -3.01 Total: -0.64 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.53 Total: -0.87 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.40 Total: -39.85 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.16 Total: -20.96 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.16 Total: 19.69 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.95 Total: 1.64 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.90 -5.73 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356457654.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.627 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds