Wall clock time and date at job start Tue Mar 31 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21298 * 120.00165 * 2 1 4 4 C 1.46796 * 119.99905 * 180.02562 * 2 1 3 5 5 N 1.30796 * 125.26355 * 0.02562 * 4 2 1 6 6 C 1.29930 * 117.48861 * 179.68089 * 5 4 2 7 7 C 1.37393 * 115.22871 * 0.53639 * 6 5 4 8 8 C 1.46996 * 126.05650 * 179.77109 * 7 6 5 9 9 O 1.21687 * 119.99961 * 353.55656 * 8 7 6 10 10 N 1.34768 * 120.00321 * 173.55860 * 8 7 6 11 11 C 1.36587 * 120.00482 * 173.45072 * 10 8 7 12 12 H 1.08000 * 120.00360 * 228.16735 * 11 10 8 13 13 C 1.39240 * 119.99479 * 48.16987 * 11 10 8 14 14 N 1.31247 * 119.99808 * 191.78004 * 13 11 10 15 15 Si 1.86798 * 120.00255 * 11.77593 * 13 11 10 16 16 H 1.48503 * 109.47024 * 264.06522 * 15 13 11 17 17 H 1.48498 * 109.47385 * 24.06707 * 15 13 11 18 18 H 1.48498 * 109.47102 * 144.06995 * 15 13 11 19 19 C 1.46506 * 119.99948 * 353.45158 * 10 8 7 20 20 C 1.52999 * 117.50245 * 182.46108 * 19 10 8 21 21 C 1.52999 * 117.49861 * 113.79631 * 19 10 8 22 22 S 1.76127 * 125.25723 * 179.97438 * 4 2 1 23 23 H 1.09005 * 109.46967 * 269.99860 * 1 2 3 24 24 H 1.09004 * 109.47044 * 29.99469 * 1 2 3 25 25 H 1.09001 * 109.47023 * 149.99904 * 1 2 3 26 26 H 1.08001 * 122.38016 * 180.33057 * 6 5 4 27 27 H 0.96995 * 119.99957 * 180.02562 * 14 13 11 28 28 H 1.09001 * 115.54614 * 328.13249 * 19 10 8 29 29 H 1.09001 * 117.49606 * 359.97438 * 20 19 10 30 30 H 1.08997 * 117.50299 * 145.01941 * 20 19 10 31 31 H 1.08997 * 117.49820 * 214.97739 * 21 19 10 32 32 H 1.08998 * 117.49964 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2713 -0.0006 5 7 1.6936 -2.4592 -0.0016 6 6 2.4895 -3.4862 -0.0084 7 6 3.8306 -3.1879 -0.0021 8 6 4.9333 -4.1600 -0.0028 9 8 4.6967 -5.3484 0.1088 10 7 6.2062 -3.7351 -0.1271 11 6 7.2378 -4.6203 0.0059 12 1 8.0774 -4.3797 0.6412 13 6 7.2070 -5.8330 -0.6776 14 7 8.0691 -6.7766 -0.3792 15 14 5.9386 -6.1170 -2.0193 16 1 4.7697 -6.8356 -1.4513 17 1 5.4972 -4.8097 -2.5680 18 1 6.5406 -6.9318 -3.1051 19 6 6.4835 -2.3236 -0.4050 20 6 7.9458 -1.9144 -0.5921 21 6 7.1962 -1.5164 0.6819 22 16 3.9948 -1.4327 -0.0013 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 2.1228 -4.5021 -0.0150 27 1 8.0479 -7.6212 -0.8556 28 1 5.7354 -1.8071 -1.0064 29 1 8.7016 -2.6953 -0.5081 30 1 8.1598 -1.1284 -1.3164 31 1 6.9174 -0.4688 0.7951 32 1 7.4592 -2.0356 1.6035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356457654.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:31 Heat of formation + Delta-G solvation = 4.411907 kcal Electronic energy + Delta-G solvation = -19544.821105 eV Core-core repulsion = 16405.743371 eV Total energy + Delta-G solvation = -3139.077735 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39344 -40.86409 -39.82252 -38.25112 -35.17214 -33.72050 -32.54657 -30.67608 -28.13091 -26.74975 -23.95788 -23.21012 -23.17013 -22.19168 -20.51823 -19.48107 -18.57576 -18.11557 -17.47832 -17.09360 -16.64727 -16.22228 -16.01296 -15.79553 -15.61215 -15.18595 -14.98419 -14.86007 -14.60562 -13.52055 -13.21430 -13.13865 -13.06222 -12.77769 -12.63612 -12.30409 -12.26805 -12.02059 -11.66138 -11.54999 -11.01723 -10.82634 -10.69117 -10.47200 -10.12862 -9.56599 -8.54460 -6.38501 -1.41775 -0.06191 0.39651 0.58432 1.20033 1.27916 1.43582 1.67192 2.05352 2.27013 2.34513 2.57473 2.81116 2.95097 3.46824 3.60092 3.79850 3.89662 3.98500 4.08151 4.12223 4.62055 4.66776 4.75717 4.77476 4.87895 5.09000 5.17150 5.34796 5.52917 5.70411 6.00871 6.37928 6.49847 6.62263 7.06544 7.53438 8.51369 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.006559 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.664694 B = 4267.869082 C = 5077.376974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.444 3.556 3 O -0.469 6.469 4 C -0.073 4.073 5 N -0.417 5.417 6 C 0.085 3.915 7 C -0.265 4.265 8 C 0.511 3.489 9 O -0.570 6.570 10 N -0.427 5.427 11 C -0.335 4.335 12 H 0.085 0.915 13 C 0.049 3.951 14 N -0.895 5.895 15 Si 0.970 3.030 16 H -0.277 1.277 17 H -0.278 1.278 18 H -0.301 1.301 19 C 0.001 3.999 20 C -0.146 4.146 21 C -0.166 4.166 22 S 0.273 5.727 23 H 0.121 0.879 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.191 0.809 27 H 0.279 0.721 28 H 0.129 0.871 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 15.772 -1.016 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.319 3.681 3 O -0.342 6.342 4 C -0.343 4.343 5 N -0.135 5.135 6 C -0.077 4.077 7 C -0.391 4.391 8 C 0.302 3.698 9 O -0.457 6.457 10 N -0.145 5.145 11 C -0.462 4.462 12 H 0.102 0.898 13 C -0.157 4.157 14 N -0.531 5.531 15 Si 0.802 3.198 16 H -0.204 1.204 17 H -0.204 1.204 18 H -0.231 1.231 19 C -0.105 4.105 20 C -0.183 4.183 21 C -0.204 4.204 22 S 0.533 5.467 23 H 0.139 0.861 24 H 0.128 0.872 25 H 0.119 0.881 26 H 0.207 0.793 27 H 0.089 0.911 28 H 0.145 0.855 29 H 0.110 0.890 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.477 16.391 -0.966 19.477 hybrid contribution -0.377 -2.043 -0.435 2.123 sum -10.854 14.347 -1.401 18.045 Atomic orbital electron populations 1.22141 0.87890 1.06555 1.06746 1.22177 0.93471 0.83063 0.69394 1.90607 1.72931 1.32994 1.37681 1.29437 0.97523 0.98176 1.09132 1.66304 1.37938 0.97154 1.12084 1.22402 0.86523 0.99876 0.98929 1.26709 0.99379 0.98575 1.14398 1.17483 0.82902 0.87445 0.82008 1.90573 1.83126 1.17108 1.54894 1.43019 1.03906 1.07467 1.60154 1.18632 1.00953 0.97929 1.28687 0.89791 1.26037 0.96740 0.95123 0.97839 1.69663 1.37394 1.05410 1.40587 0.85281 0.79557 0.78286 0.76692 1.20409 1.20379 1.23054 1.22413 0.98987 0.82988 1.06123 1.23279 0.91741 1.03016 1.00294 1.23462 1.02502 1.00980 0.93437 1.85120 1.03543 0.96758 1.61313 0.86065 0.87168 0.88132 0.79253 0.91119 0.85458 0.88998 0.84805 0.84678 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 10.13 71.24 0.72 -1.57 16 2 C 0.44 9.63 7.24 27.93 0.20 9.83 16 3 O -0.47 -12.06 17.67 -3.08 -0.05 -12.12 16 4 C -0.07 -1.94 7.38 87.09 0.64 -1.30 16 5 N -0.42 -12.00 10.06 -188.69 -1.90 -13.90 16 6 C 0.08 2.85 11.09 84.77 0.94 3.79 16 7 C -0.27 -10.02 6.34 24.37 0.15 -9.86 16 8 C 0.51 24.50 5.97 86.54 0.52 25.01 16 9 O -0.57 -31.61 12.06 -4.31 -0.05 -31.66 16 10 N -0.43 -20.13 2.42 -617.32 -1.50 -21.62 16 11 C -0.33 -18.32 8.32 84.19 0.70 -17.62 16 12 H 0.08 4.81 7.57 -2.91 -0.02 4.79 16 13 C 0.05 2.86 5.05 85.02 0.43 3.29 16 14 N -0.89 -53.85 13.95 21.71 0.30 -53.55 16 15 Si 0.97 51.01 24.45 68.60 1.68 52.69 16 16 H -0.28 -15.41 6.40 99.48 0.64 -14.77 16 17 H -0.28 -14.05 7.01 99.48 0.70 -13.35 16 18 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 19 C 0.00 0.03 4.51 44.99 0.20 0.23 16 20 C -0.15 -4.45 9.81 30.62 0.30 -4.15 16 21 C -0.17 -4.72 10.07 30.62 0.31 -4.41 16 22 S 0.27 7.87 18.17 -56.49 -1.03 6.84 16 23 H 0.12 1.18 8.14 -2.38 -0.02 1.17 16 24 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.30 7.86 -2.39 -0.02 1.28 16 26 H 0.19 6.21 8.06 -2.91 -0.02 6.19 16 27 H 0.28 15.82 8.30 -92.71 -0.77 15.05 16 28 H 0.13 4.03 5.04 -18.48 -0.09 3.94 16 29 H 0.09 3.36 6.79 -2.39 -0.02 3.34 16 30 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -70.88 289.55 3.57 -67.31 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.00 Total: 2.76 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.12 Total: 3.26 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -3.09 Total: -89.07 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.11 Total: -43.78 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 1.68 Total: 52.69 kcal Atomic # 16 Polarization: 7.87 SS G_CDS: -1.03 Total: 6.84 kcal Total: -70.88 3.57 -67.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356457654.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.719 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds