Wall clock time and date at job start Tue Mar 31 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46779 * 226.00198 * 3 2 1 5 5 C 1.36936 * 119.99701 * 95.15215 * 4 3 2 6 6 H 1.07998 * 119.99664 * 162.36932 * 5 4 3 7 7 C 1.38808 * 120.00204 * 342.37287 * 5 4 3 8 8 N 1.31620 * 120.00091 * 340.31138 * 7 5 4 9 9 Si 1.86798 * 120.00294 * 160.31691 * 7 5 4 10 10 H 1.48503 * 109.46927 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47301 * 119.99555 * 9 7 5 12 12 H 1.48499 * 109.47004 * 239.99795 * 9 7 5 13 13 C 1.46497 * 119.99838 * 275.14806 * 4 3 2 14 14 C 1.50700 * 109.46935 * 90.00686 * 13 4 3 15 15 N 1.28619 * 124.71063 * 90.00035 * 14 13 4 16 16 C 1.33609 * 115.76838 * 180.02562 * 15 14 13 17 17 C 1.47111 * 123.15595 * 179.97438 * 16 15 14 18 18 O 1.21548 * 120.00290 * 179.97438 * 17 16 15 19 19 O 1.34800 * 119.99822 * 359.97438 * 17 16 15 20 20 C 1.45198 * 117.00179 * 179.97438 * 19 17 16 21 21 C 1.35288 * 113.68723 * 359.97438 * 16 15 14 22 22 S 1.70770 * 124.70692 * 269.69525 * 14 13 4 23 23 H 4.40639 * 5.51523 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.46727 * 106.00374 * 3 2 1 25 25 H 1.09001 * 109.47482 * 346.00326 * 3 2 1 26 26 H 0.97001 * 120.00469 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47056 * 210.00061 * 13 4 3 28 28 H 1.08994 * 109.47482 * 330.00245 * 13 4 3 29 29 H 1.09003 * 109.47014 * 59.99863 * 20 19 17 30 30 H 1.08998 * 109.47720 * 180.02562 * 20 19 17 31 31 H 1.09000 * 109.47281 * 300.00569 * 20 19 17 32 32 H 1.08007 * 125.58592 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9604 0.9936 5 6 3.4626 0.5345 2.2529 6 1 4.0774 1.1540 2.8890 7 6 3.0057 -0.6932 2.7118 8 7 1.9724 -1.2687 2.1342 9 14 3.8571 -1.5288 4.1492 10 1 4.9837 -0.6821 4.6174 11 1 2.8865 -1.7187 5.2570 12 1 4.3782 -2.8501 3.7157 13 6 3.2700 2.3755 0.6400 14 6 1.9824 3.0960 0.9467 15 7 1.7066 3.6563 2.0711 16 6 0.5099 4.2456 2.1483 17 6 0.0283 4.9335 3.3562 18 8 -1.0714 5.4511 3.3631 19 8 0.8067 4.9897 4.4553 20 6 0.2672 5.6851 5.6102 21 6 -0.2172 4.1503 1.0115 22 16 0.6900 3.2883 -0.1529 23 1 -1.0502 0.0000 -0.0003 24 1 3.0091 0.2842 -0.9879 25 1 3.0098 -0.9963 0.2486 26 1 1.6529 -2.1265 2.4550 27 1 4.0808 2.8182 1.2186 28 1 3.4918 2.4645 -0.4234 29 1 -0.6549 5.1991 5.9289 30 1 0.9929 5.6569 6.4231 31 1 0.0588 6.7217 5.3455 32 1 -1.2068 4.5565 0.8624 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460003500.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:02 Heat of formation + Delta-G solvation = 50.391807 kcal Electronic energy + Delta-G solvation = -19372.358160 eV Core-core repulsion = 16235.274263 eV Total energy + Delta-G solvation = -3137.083896 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35201 -38.76191 -36.36112 -36.09924 -32.02901 -31.65114 -30.07149 -27.96388 -27.08292 -26.11169 -24.78764 -22.49460 -20.75867 -19.36025 -18.56313 -17.52375 -16.72852 -16.53158 -16.19723 -16.03506 -15.21356 -14.51872 -14.18881 -13.77915 -13.53413 -13.46111 -13.06029 -12.77396 -12.44268 -11.97051 -11.66246 -11.53383 -11.40851 -11.02171 -10.80978 -10.63461 -10.51064 -10.31868 -10.12270 -9.25256 -9.21287 -9.04066 -8.95788 -8.59279 -8.21291 -7.24936 -5.93514 -3.33377 0.88796 1.76171 2.12093 2.22131 3.06156 3.31658 3.40238 3.42509 3.57597 4.09186 4.29505 4.44332 4.53744 5.17372 5.19375 5.25628 5.31580 5.47203 5.52999 5.58863 5.65018 5.74201 5.96609 6.34662 6.39640 6.50084 6.55188 7.09077 7.31351 7.68097 7.79226 8.08966 8.26768 8.94268 9.09867 9.55587 9.98818 11.08407 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015204 B = 0.007126 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.136798 B = 3928.267330 C = 5034.209721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.103 4.103 3 C 0.261 3.739 4 N -0.560 5.560 5 C -0.256 4.256 6 H 0.085 0.915 7 C 0.005 3.995 8 N -0.883 5.883 9 Si 0.909 3.091 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.287 1.287 13 C 0.206 3.794 14 C 0.042 3.958 15 N -0.430 5.430 16 C 0.022 3.978 17 C 0.552 3.448 18 O -0.515 6.515 19 O -0.333 6.333 20 C 0.035 3.965 21 C -0.247 4.247 22 S 0.198 5.802 23 H 0.188 0.812 24 H 0.043 0.957 25 H 0.104 0.896 26 H 0.257 0.743 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 8.998 -3.576 9.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.106 4.106 3 C 0.136 3.864 4 N -0.277 5.277 5 C -0.386 4.386 6 H 0.102 0.898 7 C -0.195 4.195 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.214 1.214 13 C 0.075 3.925 14 C -0.242 4.242 15 N -0.145 5.145 16 C -0.113 4.113 17 C 0.395 3.605 18 O -0.405 6.405 19 O -0.248 6.248 20 C -0.059 4.059 21 C -0.391 4.391 22 S 0.458 5.542 23 H 0.206 0.794 24 H 0.061 0.939 25 H 0.121 0.879 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.898 8.639 -4.087 9.599 hybrid contribution -1.043 -0.065 2.159 2.398 sum -1.941 8.574 -1.928 9.000 Atomic orbital electron populations 1.24127 0.95265 1.04765 1.06458 1.24065 0.95151 0.96412 0.94969 1.18052 0.83044 0.95913 0.89348 1.44805 1.72075 0.99400 1.11468 1.19451 1.24981 1.01787 0.92358 0.89757 1.25056 0.96262 0.99626 0.98580 1.70108 1.22027 1.17707 1.42640 0.86106 0.79127 0.79301 0.81598 1.19927 1.21798 1.21366 1.20075 0.89057 0.84223 0.99135 1.29575 1.04146 0.98762 0.91676 1.66939 1.15194 1.10044 1.22295 1.19190 0.92816 1.06077 0.93217 1.20047 0.82005 0.76060 0.82378 1.90818 1.20993 1.44898 1.83753 1.86749 1.46347 1.69872 1.21824 1.23279 1.00376 0.96437 0.85808 1.26355 1.06903 1.07193 0.98642 1.82813 1.09677 1.44721 1.17007 0.79446 0.93928 0.87859 0.93275 0.89463 0.91220 0.92008 0.88006 0.92086 0.80450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.18 18.64 29.55 0.55 -5.63 16 2 C -0.10 -2.31 10.39 -37.12 -0.39 -2.70 16 3 C 0.26 5.64 5.45 -6.83 -0.04 5.60 16 4 N -0.56 -12.64 2.49 -177.95 -0.44 -13.09 16 5 C -0.26 -6.54 9.67 -15.06 -0.15 -6.68 16 6 H 0.08 2.17 7.88 -52.49 -0.41 1.75 16 7 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 8 N -0.88 -24.04 9.33 55.49 0.52 -23.52 16 9 Si 0.91 21.08 29.60 -169.99 -5.03 16.04 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.21 3.89 6.27 -5.20 -0.03 3.86 16 14 C 0.04 0.83 6.63 -13.62 -0.09 0.74 16 15 N -0.43 -9.26 10.60 -8.53 -0.09 -9.35 16 16 C 0.02 0.45 6.71 -84.55 -0.57 -0.12 16 17 C 0.55 10.72 7.94 34.33 0.27 10.99 16 18 O -0.52 -10.09 16.50 -19.30 -0.32 -10.41 16 19 O -0.33 -6.06 10.50 -40.76 -0.43 -6.49 16 20 C 0.04 0.45 10.57 101.05 1.07 1.52 16 21 C -0.25 -4.34 10.62 29.68 0.32 -4.02 16 22 S 0.20 3.29 21.45 -107.50 -2.31 0.98 16 23 H 0.19 3.52 7.80 -54.08 -0.42 3.10 16 24 H 0.04 0.77 7.97 -51.93 -0.41 0.35 16 25 H 0.10 2.45 6.44 -51.93 -0.33 2.12 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 27 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16 28 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.18 2.70 8.03 -52.48 -0.42 2.28 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -31.16 306.42 -5.86 -37.02 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.24 Total: 0.59 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 0.86 Total: 3.61 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.01 Total: -45.96 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.75 Total: -16.90 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.31 Total: 0.98 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.16 -5.86 -37.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460003500.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.410 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds