Wall clock time and date at job start Tue Mar 31 2020 01:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 5 5 H 1.07998 * 120.00472 * 120.00016 * 4 2 1 6 6 C 1.37879 * 119.99705 * 299.99679 * 4 2 1 7 7 N 1.31516 * 119.99689 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47068 * 90.00148 * 8 6 4 10 10 H 1.48498 * 109.47385 * 209.99896 * 8 6 4 11 11 H 1.48499 * 109.47249 * 330.00327 * 8 6 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 2 15 15 C 1.33640 * 122.74995 * 94.73055 * 14 13 12 16 16 S 1.76201 * 107.92149 * 179.97438 * 15 14 13 17 17 C 1.70975 * 90.28455 * 0.27810 * 16 15 14 18 18 C 1.50693 * 124.91536 * 179.84113 * 17 16 15 19 19 F 1.39907 * 109.47157 * 269.99510 * 18 17 16 20 20 F 1.39898 * 109.47172 * 29.99787 * 18 17 16 21 21 F 1.39905 * 109.47240 * 149.99703 * 18 17 16 22 22 N 1.29024 * 110.16825 * 359.83570 * 17 16 15 23 23 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 0.97006 * 119.99890 * 179.97438 * 7 6 4 27 27 H 1.00908 * 110.99583 * 208.95182 * 12 2 1 28 28 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 29 29 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 30 30 H 1.08002 * 126.03629 * 0.04004 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.6304 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7120 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5558 15 6 1.7725 -1.0717 -4.4599 16 16 2.7691 -1.8345 -5.6966 17 6 4.1838 -1.3446 -4.8708 18 6 5.5913 -1.6371 -5.3226 19 9 6.0143 -2.8524 -4.7736 20 9 5.6253 -1.7191 -6.7188 21 9 6.4411 -0.6113 -4.8950 22 7 3.8718 -0.6882 -3.8047 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7081 1.1606 3.4844 27 1 2.9173 -1.1205 -1.0288 28 1 1.0870 0.6165 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 0.6929 -1.0515 -4.4370 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461724411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:11 Heat of formation + Delta-G solvation = -101.405916 kcal Electronic energy + Delta-G solvation = -19209.699865 eV Core-core repulsion = 15524.176785 eV Total energy + Delta-G solvation = -3685.523080 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.39850 -47.96893 -47.83327 -40.14950 -35.92645 -32.96656 -31.40810 -28.70385 -27.67369 -25.63431 -24.84905 -22.92175 -20.37940 -19.86760 -19.13925 -18.78910 -18.19314 -17.13951 -16.59592 -15.17229 -14.98367 -14.76719 -14.62916 -14.49698 -14.30800 -14.03152 -14.00383 -13.99238 -13.62769 -13.33817 -12.84459 -12.52478 -11.98914 -11.62274 -11.21454 -10.90184 -10.82303 -10.34746 -10.19308 -10.10834 -10.02616 -9.76544 -9.15795 -8.86795 -8.50717 -7.40811 -6.06025 -4.12363 0.20085 0.82733 1.32906 2.18403 2.47469 3.23114 3.28967 3.35458 3.39711 3.88497 4.06703 4.37992 4.47299 5.04450 5.17387 5.25440 5.45508 5.71049 6.02806 6.14302 6.79101 7.05689 7.13656 7.36818 7.40418 7.74120 7.82368 8.20211 8.28396 8.56562 8.96266 9.53707 11.00381 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.004035 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.001722 B = 6937.329488 C = 7601.951556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.004 0.996 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.130 3.870 14 C 0.080 3.920 15 C -0.207 4.207 16 S 0.199 5.801 17 C -0.086 4.086 18 C 0.556 3.444 19 F -0.163 7.163 20 F -0.168 7.168 21 F -0.156 7.156 22 N -0.404 5.404 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.004 0.996 26 H 0.261 0.739 27 H 0.336 0.664 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -3.910 -18.622 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.022 0.978 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.315 5.315 13 C -0.002 4.002 14 C -0.053 4.053 15 C -0.347 4.347 16 S 0.452 5.548 17 C -0.363 4.363 18 C 0.498 3.502 19 F -0.144 7.144 20 F -0.149 7.149 21 F -0.137 7.137 22 N -0.120 5.120 23 H 0.051 0.949 24 H 0.101 0.899 25 H 0.023 0.977 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.539 -4.405 -19.245 20.057 hybrid contribution 0.979 0.497 1.813 2.120 sum 4.517 -3.908 -17.432 18.427 Atomic orbital electron populations 1.21731 0.97688 0.99426 0.99459 1.19152 0.92675 0.92515 0.85223 0.97807 1.21226 1.31544 1.12616 0.90336 0.92196 1.24904 0.94967 0.94991 0.99053 1.69891 1.36531 1.22897 1.23550 0.86502 0.78508 0.80076 0.82362 1.20698 1.21170 1.19838 1.60868 1.32609 1.32369 1.05649 1.20541 0.99739 0.93045 0.86902 1.20570 0.85146 1.00679 0.98880 1.27346 1.05893 1.03870 0.97602 1.83841 0.95754 1.50629 1.24565 1.26587 0.98866 1.10048 1.00833 1.16931 0.83454 0.75071 0.74735 1.93271 1.90836 1.44850 1.85443 1.93231 1.96679 1.96109 1.28890 1.93265 1.72082 1.58852 1.89549 1.65828 1.20259 1.11679 1.14238 0.94878 0.89936 0.97697 0.92872 0.84623 0.89537 0.93776 0.79061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 9.19 37.16 0.34 -2.65 16 2 C 0.21 5.26 2.60 -68.86 -0.18 5.08 16 3 H 0.00 0.12 7.80 -51.93 -0.40 -0.29 16 4 C -0.52 -14.17 8.59 -34.44 -0.30 -14.47 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 N -0.68 -14.41 6.29 -109.22 -0.69 -15.10 16 13 C 0.13 2.28 5.92 -4.98 -0.03 2.25 16 14 C 0.08 1.23 6.25 -84.22 -0.53 0.70 16 15 C -0.21 -2.50 11.12 29.12 0.32 -2.17 16 16 S 0.20 2.08 22.85 -107.50 -2.46 -0.38 16 17 C -0.09 -1.16 6.74 -13.46 -0.09 -1.25 16 18 C 0.56 6.95 3.55 36.00 0.13 7.07 16 19 F -0.16 -2.08 17.30 2.25 0.04 -2.04 16 20 F -0.17 -1.81 16.99 2.25 0.04 -1.77 16 21 F -0.16 -2.13 17.22 2.25 0.04 -2.09 16 22 N -0.40 -6.48 10.42 -8.06 -0.08 -6.57 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 25 H 0.00 0.09 7.45 -51.92 -0.39 -0.30 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.34 7.33 8.22 -39.29 -0.32 7.01 16 28 H 0.09 1.40 7.39 -51.93 -0.38 1.02 16 29 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 30 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -28.66 289.63 -6.18 -34.83 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -2.61 Total: 0.84 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.42 Total: -3.81 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.14 Total: -46.19 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.12 Total: -5.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.46 Total: -0.38 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.66 -6.18 -34.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461724411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.574 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds