Wall clock time and date at job start Tue Mar 31 2020 01:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 5 5 H 1.07998 * 120.00472 * 120.00016 * 4 2 1 6 6 C 1.37879 * 119.99705 * 299.99679 * 4 2 1 7 7 N 1.31516 * 119.99689 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47068 * 90.00148 * 8 6 4 10 10 H 1.48498 * 109.47385 * 209.99896 * 8 6 4 11 11 H 1.48499 * 109.47249 * 330.00327 * 8 6 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 2 15 15 C 1.33640 * 122.74995 * 94.73055 * 14 13 12 16 16 S 1.76201 * 107.92149 * 179.97438 * 15 14 13 17 17 C 1.70975 * 90.28455 * 0.27810 * 16 15 14 18 18 C 1.50693 * 124.91536 * 179.84113 * 17 16 15 19 19 F 1.39907 * 109.47157 * 269.99510 * 18 17 16 20 20 F 1.39898 * 109.47172 * 29.99787 * 18 17 16 21 21 F 1.39905 * 109.47240 * 149.99703 * 18 17 16 22 22 N 1.29024 * 110.16825 * 359.83570 * 17 16 15 23 23 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 0.97006 * 119.99890 * 179.97438 * 7 6 4 27 27 H 1.00908 * 110.99583 * 208.95182 * 12 2 1 28 28 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 29 29 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 30 30 H 1.08002 * 126.03629 * 0.04004 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.6304 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7120 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5558 15 6 1.7725 -1.0717 -4.4599 16 16 2.7691 -1.8345 -5.6966 17 6 4.1838 -1.3446 -4.8708 18 6 5.5913 -1.6371 -5.3226 19 9 6.0143 -2.8524 -4.7736 20 9 5.6253 -1.7191 -6.7188 21 9 6.4411 -0.6113 -4.8950 22 7 3.8718 -0.6882 -3.8047 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7081 1.1606 3.4844 27 1 2.9173 -1.1205 -1.0288 28 1 1.0870 0.6165 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 0.6929 -1.0515 -4.4370 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461724411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:11 Heat of formation + Delta-G solvation = -120.515657 kcal Electronic energy + Delta-G solvation = -19210.528526 eV Core-core repulsion = 15524.176785 eV Total energy + Delta-G solvation = -3686.351741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.37008 -48.91029 -48.84558 -41.22579 -37.67387 -34.74548 -32.81045 -30.37961 -28.69485 -27.45766 -26.48731 -24.07405 -21.80523 -21.40020 -20.17991 -19.76838 -19.16115 -18.56543 -18.15220 -16.95350 -16.24513 -16.01024 -15.77003 -15.65642 -15.52325 -15.28301 -15.00880 -14.99797 -14.93608 -14.77547 -14.27938 -13.83088 -13.61532 -13.08342 -12.88104 -12.72953 -12.68419 -12.20173 -12.13083 -11.92230 -11.06858 -10.92162 -10.72648 -10.58823 -10.14577 -9.15174 -8.14684 -6.28368 -0.77139 -0.09764 0.36008 1.21079 1.36581 1.41619 1.42658 1.53144 2.25244 2.41169 2.90982 3.08976 3.14284 3.36543 3.79352 4.00079 4.19100 4.52626 4.68093 4.79720 4.89424 5.09567 5.20814 5.47074 5.64495 5.85268 6.22196 6.32232 6.41455 6.68063 6.92103 7.41664 8.90772 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.004035 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.001722 B = 6937.329488 C = 7601.951556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.215 3.785 3 H -0.027 1.027 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.270 1.270 12 N -0.677 5.677 13 C 0.135 3.865 14 C 0.051 3.949 15 C -0.197 4.197 16 S 0.297 5.703 17 C -0.115 4.115 18 C 0.559 3.441 19 F -0.166 7.166 20 F -0.156 7.156 21 F -0.167 7.167 22 N -0.443 5.443 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.329 0.671 28 H 0.101 0.899 29 H 0.025 0.975 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -5.120 -20.088 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.010 1.010 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.194 1.194 12 N -0.308 5.308 13 C 0.003 3.997 14 C -0.082 4.082 15 C -0.338 4.338 16 S 0.550 5.450 17 C -0.391 4.391 18 C 0.501 3.499 19 F -0.147 7.147 20 F -0.137 7.137 21 F -0.148 7.148 22 N -0.160 5.160 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.119 0.881 29 H 0.043 0.957 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.971 -5.623 -20.743 21.696 hybrid contribution 1.143 0.849 2.114 2.549 sum 4.114 -4.774 -18.628 19.665 Atomic orbital electron populations 1.21530 0.96868 0.99144 0.99511 1.18971 0.93269 0.90816 0.86298 1.00976 1.21549 1.31784 1.12714 0.91776 0.92781 1.25670 0.95114 0.95673 1.01846 1.70008 1.37238 1.23911 1.24231 0.85524 0.78010 0.79003 0.78886 1.20356 1.20519 1.19444 1.60790 1.32076 1.32666 1.05250 1.20454 1.00259 0.92266 0.86721 1.20168 0.85724 1.03002 0.99314 1.27728 1.07342 1.01714 0.97006 1.83521 0.92301 1.47622 1.21535 1.26765 1.00379 1.10672 1.01275 1.16884 0.83168 0.74688 0.75146 1.93262 1.90875 1.44980 1.85607 1.93251 1.96612 1.96034 1.27819 1.93241 1.72455 1.59356 1.89764 1.65729 1.21084 1.13238 1.15935 0.95114 0.92468 0.95018 0.92743 0.85426 0.88119 0.95660 0.76358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 9.19 71.98 0.66 -4.71 16 2 C 0.21 10.86 2.60 44.17 0.11 10.97 16 3 H -0.03 -1.53 7.80 -2.39 -0.02 -1.55 16 4 C -0.54 -29.94 8.59 25.60 0.22 -29.72 16 5 H 0.05 2.99 7.62 -2.91 -0.02 2.97 16 6 C 0.02 0.92 5.30 84.65 0.45 1.36 16 7 N -0.91 -52.33 11.32 21.45 0.24 -52.09 16 8 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.68 -28.76 6.29 -499.46 -3.14 -31.90 16 13 C 0.13 4.72 5.92 85.56 0.51 5.22 16 14 C 0.05 1.51 6.25 41.52 0.26 1.76 16 15 C -0.20 -4.18 11.12 66.78 0.74 -3.44 16 16 S 0.30 5.20 22.85 -56.49 -1.29 3.91 16 17 C -0.12 -2.94 6.74 88.52 0.60 -2.34 16 18 C 0.56 13.36 3.55 71.23 0.25 13.61 16 19 F -0.17 -4.09 17.30 44.97 0.78 -3.31 16 20 F -0.16 -3.06 16.99 44.97 0.76 -2.30 16 21 F -0.17 -4.52 17.22 44.97 0.77 -3.75 16 22 N -0.44 -14.00 10.42 -179.40 -1.87 -15.87 16 23 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 25 H 0.03 1.29 7.45 -2.38 -0.02 1.28 16 26 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 27 H 0.33 14.65 8.22 -89.69 -0.74 13.92 16 28 H 0.10 3.16 7.39 -2.39 -0.02 3.14 16 29 H 0.03 0.97 8.06 -2.39 -0.02 0.95 16 30 H 0.22 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -62.18 289.63 2.55 -59.63 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.46 Total: 7.14 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.80 Total: -7.27 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -4.77 Total: -99.85 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 2.32 Total: -9.36 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.29 Total: 3.91 kcal Total: -62.18 2.55 -59.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461724411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.885 kcal (2) G-P(sol) polarization free energy of solvation -62.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds