Wall clock time and date at job start Tue Mar 31 2020 01:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47159 * 2 1 4 4 C 1.50697 * 109.47029 * 240.00285 * 2 1 3 5 5 H 1.08004 * 120.00034 * 274.99187 * 4 2 1 6 6 C 1.37873 * 120.00405 * 94.99890 * 4 2 1 7 7 N 1.31512 * 120.00188 * 184.91351 * 6 4 2 8 8 Si 1.86801 * 120.00011 * 4.90924 * 6 4 2 9 9 H 1.48499 * 109.46976 * 84.83368 * 8 6 4 10 10 H 1.48501 * 109.47236 * 204.83294 * 8 6 4 11 11 H 1.48503 * 109.46985 * 324.83588 * 8 6 4 12 12 N 1.46899 * 109.47176 * 120.00060 * 2 1 3 13 13 C 1.46904 * 110.99866 * 275.00148 * 12 2 1 14 14 C 1.50702 * 109.47098 * 180.02562 * 13 12 2 15 15 C 1.33636 * 122.75144 * 94.73129 * 14 13 12 16 16 S 1.76198 * 107.92605 * 179.97438 * 15 14 13 17 17 C 1.70980 * 90.28085 * 0.27324 * 16 15 14 18 18 C 1.50698 * 124.91661 * 179.84158 * 17 16 15 19 19 F 1.39903 * 109.47006 * 269.99937 * 18 17 16 20 20 F 1.39895 * 109.47112 * 29.99950 * 18 17 16 21 21 F 1.39907 * 109.47118 * 150.00128 * 18 17 16 22 22 N 1.29026 * 110.16639 * 359.84096 * 17 16 15 23 23 H 1.09000 * 109.47498 * 295.04744 * 1 2 3 24 24 H 1.09001 * 109.47000 * 55.04558 * 1 2 3 25 25 H 1.08997 * 109.47154 * 175.04438 * 1 2 3 26 26 H 0.97003 * 120.00019 * 179.97438 * 7 6 4 27 27 H 1.00899 * 110.99661 * 38.95195 * 12 2 1 28 28 H 1.08995 * 109.47146 * 59.99555 * 13 12 2 29 29 H 1.09005 * 109.46957 * 299.99559 * 13 12 2 30 30 H 1.07999 * 126.03904 * 0.03497 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7058 -0.6131 -3.4622 8 14 2.3133 1.8791 -2.3175 9 1 3.5988 2.3950 -1.7823 10 1 2.1055 2.3991 -3.6929 11 1 1.1983 2.3274 -1.4451 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5885 -0.5215 3.5557 15 6 3.8763 -0.5301 3.9126 16 16 4.0289 -1.5102 5.3688 17 6 2.3471 -1.8176 5.3484 18 6 1.6122 -2.6618 6.3575 19 9 1.5892 -3.9919 5.9245 20 9 2.2640 -2.5848 7.5930 21 9 0.3011 -2.1923 6.4919 22 7 1.7983 -1.2222 4.3439 23 1 -0.3634 0.4351 0.9310 24 1 -0.3633 0.5888 -0.8423 25 1 -0.3633 -1.0238 -0.0888 26 1 2.9362 -0.1048 -4.2556 27 1 1.4495 -1.4979 1.4100 28 1 1.0870 0.6163 2.5525 29 1 2.7588 1.0462 2.1182 30 1 4.6811 -0.0247 3.3997 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461724422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:14 Heat of formation + Delta-G solvation = -99.080129 kcal Electronic energy + Delta-G solvation = -19261.447564 eV Core-core repulsion = 15576.025338 eV Total energy + Delta-G solvation = -3685.422226 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.43889 -48.00706 -47.87765 -40.20539 -36.23005 -32.83684 -31.66076 -29.28499 -27.71026 -25.56079 -25.02986 -22.98503 -20.43874 -20.06513 -19.21087 -18.82903 -18.23241 -17.22377 -16.97538 -15.25223 -15.15066 -14.82583 -14.72321 -14.36360 -14.31178 -14.06267 -14.04831 -14.00278 -13.63615 -13.50986 -12.87904 -12.53036 -12.28068 -12.05932 -11.63365 -11.30891 -11.06770 -10.73981 -10.20217 -10.09700 -9.83143 -9.77893 -9.23821 -9.17357 -8.55623 -7.50034 -6.08408 -4.06033 0.16345 0.79273 1.29612 2.14265 2.41321 3.18833 3.25001 3.32570 3.33880 3.83986 4.02684 4.38484 4.39795 4.96191 5.09882 5.12314 5.43179 5.61456 5.87330 5.98890 6.22107 6.35657 6.56580 6.73836 7.11273 7.30570 7.63326 7.85404 8.24291 8.61820 8.99673 9.53553 11.05160 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.004018 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.450207 B = 6966.279254 C = 7225.532137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.181 3.819 3 H 0.038 0.962 4 C -0.492 4.492 5 H 0.076 0.924 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.669 5.669 13 C 0.126 3.874 14 C 0.077 3.923 15 C -0.204 4.204 16 S 0.205 5.795 17 C -0.088 4.088 18 C 0.557 3.443 19 F -0.162 7.162 20 F -0.167 7.167 21 F -0.157 7.157 22 N -0.406 5.406 23 H 0.022 0.978 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.264 0.736 27 H 0.334 0.666 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -0.213 20.998 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.530 4.530 5 H 0.094 0.906 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.300 5.300 13 C -0.006 4.006 14 C -0.056 4.056 15 C -0.344 4.344 16 S 0.458 5.542 17 C -0.365 4.365 18 C 0.498 3.502 19 F -0.144 7.144 20 F -0.149 7.149 21 F -0.138 7.138 22 N -0.122 5.122 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.637 -0.492 21.258 21.426 hybrid contribution -1.383 1.376 -0.542 2.025 sum 1.254 0.884 20.716 20.773 Atomic orbital electron populations 1.22643 1.00702 1.00998 0.98783 1.19686 0.89652 0.94658 0.88732 0.94401 1.20832 1.42810 0.95736 0.93669 0.90562 1.24974 0.94722 0.98056 0.95366 1.69889 1.46485 1.35686 1.01693 0.86907 0.78870 0.86732 0.77186 1.20145 1.21478 1.19270 1.61083 1.58330 1.08696 1.01863 1.20599 0.99578 0.94379 0.86091 1.20469 0.88720 0.98734 0.97672 1.27373 1.01742 1.05432 0.99882 1.83884 1.04192 1.43053 1.23041 1.26576 0.97788 1.09469 1.02662 1.16923 0.77083 0.77712 0.78442 1.93273 1.96288 1.35315 1.89486 1.93233 1.81186 1.96191 1.44265 1.93260 1.36580 1.88234 1.95755 1.65807 1.38911 1.05878 1.01603 0.95942 0.93094 0.93130 0.92618 0.84894 0.93856 0.89476 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 9.16 37.16 0.34 -3.24 16 2 C 0.18 4.11 2.23 -68.87 -0.15 3.96 16 3 H 0.04 0.87 4.95 -51.93 -0.26 0.61 16 4 C -0.49 -13.55 9.19 -34.44 -0.32 -13.87 16 5 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 8 Si 0.88 20.93 26.99 -169.99 -4.59 16.34 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.08 6.82 56.52 0.39 -5.70 16 12 N -0.67 -13.43 6.22 -109.22 -0.68 -14.11 16 13 C 0.13 2.06 5.92 -4.97 -0.03 2.03 16 14 C 0.08 1.13 6.25 -84.23 -0.53 0.61 16 15 C -0.20 -2.43 11.11 29.12 0.32 -2.11 16 16 S 0.21 2.11 22.85 -107.50 -2.46 -0.35 16 17 C -0.09 -1.14 6.74 -13.46 -0.09 -1.23 16 18 C 0.56 6.67 3.55 36.00 0.13 6.79 16 19 F -0.16 -2.00 17.30 2.25 0.04 -1.96 16 20 F -0.17 -1.74 16.99 2.25 0.04 -1.71 16 21 F -0.16 -2.03 17.22 2.25 0.04 -1.99 16 22 N -0.41 -6.18 10.42 -8.06 -0.08 -6.27 16 23 H 0.02 0.41 7.35 -51.93 -0.38 0.02 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.33 6.67 8.47 -39.29 -0.33 6.34 16 28 H 0.04 0.71 7.36 -51.93 -0.38 0.33 16 29 H 0.09 1.33 8.01 -51.93 -0.42 0.91 16 30 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 289.49 15.07 4.36 4.36 Total: -1.00 -29.90 289.49 -5.59 -35.49 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -2.61 Total: 1.71 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.42 Total: -5.17 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.01 Total: -46.73 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.12 Total: -5.66 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.46 Total: -0.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.90 -5.59 -35.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461724422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.587 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds