Wall clock time and date at job start Tue Mar 31 2020 01:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47159 * 2 1 4 4 C 1.50697 * 109.47029 * 240.00285 * 2 1 3 5 5 H 1.08004 * 120.00034 * 274.99187 * 4 2 1 6 6 C 1.37873 * 120.00405 * 94.99890 * 4 2 1 7 7 N 1.31512 * 120.00188 * 184.91351 * 6 4 2 8 8 Si 1.86801 * 120.00011 * 4.90924 * 6 4 2 9 9 H 1.48499 * 109.46976 * 84.83368 * 8 6 4 10 10 H 1.48501 * 109.47236 * 204.83294 * 8 6 4 11 11 H 1.48503 * 109.46985 * 324.83588 * 8 6 4 12 12 N 1.46899 * 109.47176 * 120.00060 * 2 1 3 13 13 C 1.46904 * 110.99866 * 275.00148 * 12 2 1 14 14 C 1.50702 * 109.47098 * 180.02562 * 13 12 2 15 15 C 1.33636 * 122.75144 * 94.73129 * 14 13 12 16 16 S 1.76198 * 107.92605 * 179.97438 * 15 14 13 17 17 C 1.70980 * 90.28085 * 0.27324 * 16 15 14 18 18 C 1.50698 * 124.91661 * 179.84158 * 17 16 15 19 19 F 1.39903 * 109.47006 * 269.99937 * 18 17 16 20 20 F 1.39895 * 109.47112 * 29.99950 * 18 17 16 21 21 F 1.39907 * 109.47118 * 150.00128 * 18 17 16 22 22 N 1.29026 * 110.16639 * 359.84096 * 17 16 15 23 23 H 1.09000 * 109.47498 * 295.04744 * 1 2 3 24 24 H 1.09001 * 109.47000 * 55.04558 * 1 2 3 25 25 H 1.08997 * 109.47154 * 175.04438 * 1 2 3 26 26 H 0.97003 * 120.00019 * 179.97438 * 7 6 4 27 27 H 1.00899 * 110.99661 * 38.95195 * 12 2 1 28 28 H 1.08995 * 109.47146 * 59.99555 * 13 12 2 29 29 H 1.09005 * 109.46957 * 299.99559 * 13 12 2 30 30 H 1.07999 * 126.03904 * 0.03497 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7058 -0.6131 -3.4622 8 14 2.3133 1.8791 -2.3175 9 1 3.5988 2.3950 -1.7823 10 1 2.1055 2.3991 -3.6929 11 1 1.1983 2.3274 -1.4451 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5885 -0.5215 3.5557 15 6 3.8763 -0.5301 3.9126 16 16 4.0289 -1.5102 5.3688 17 6 2.3471 -1.8176 5.3484 18 6 1.6122 -2.6618 6.3575 19 9 1.5892 -3.9919 5.9245 20 9 2.2640 -2.5848 7.5930 21 9 0.3011 -2.1923 6.4919 22 7 1.7983 -1.2222 4.3439 23 1 -0.3634 0.4351 0.9310 24 1 -0.3633 0.5888 -0.8423 25 1 -0.3633 -1.0238 -0.0888 26 1 2.9362 -0.1048 -4.2556 27 1 1.4495 -1.4979 1.4100 28 1 1.0870 0.6163 2.5525 29 1 2.7588 1.0462 2.1182 30 1 4.6811 -0.0247 3.3997 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461724422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:13 Heat of formation + Delta-G solvation = -120.329612 kcal Electronic energy + Delta-G solvation = -19262.369011 eV Core-core repulsion = 15576.025338 eV Total energy + Delta-G solvation = -3686.343673 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.36843 -48.91030 -48.84242 -41.22557 -37.84851 -34.62566 -33.11604 -30.76880 -28.68140 -27.28501 -26.59036 -24.05392 -21.90790 -21.41369 -20.21647 -19.76616 -19.16389 -19.01828 -18.14292 -16.80104 -16.45869 -15.88618 -15.79323 -15.66386 -15.28350 -15.18403 -15.16791 -15.00101 -14.99122 -14.69575 -14.48274 -13.97398 -13.76767 -13.55383 -12.98432 -12.88196 -12.64554 -12.50162 -11.92376 -11.76036 -11.20237 -11.07844 -10.73923 -10.67322 -10.16582 -9.06851 -8.23786 -6.26943 -0.77513 -0.10140 0.36510 1.20910 1.35745 1.38517 1.40307 1.49675 2.25274 2.38233 2.90627 3.06695 3.09843 3.37287 3.76794 3.99634 4.18851 4.39427 4.54608 4.63473 4.71814 4.81998 4.86335 5.03464 5.41627 5.67813 6.02278 6.32257 6.62149 6.64512 6.78294 7.37263 8.93771 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.004018 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.450207 B = 6966.279254 C = 7225.532137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.046 0.954 4 C -0.497 4.497 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.953 5.953 8 Si 0.945 3.055 9 H -0.263 1.263 10 H -0.290 1.290 11 H -0.244 1.244 12 N -0.680 5.680 13 C 0.129 3.871 14 C 0.050 3.950 15 C -0.201 4.201 16 S 0.290 5.710 17 C -0.115 4.115 18 C 0.560 3.440 19 F -0.166 7.166 20 F -0.157 7.157 21 F -0.165 7.165 22 N -0.437 5.437 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.331 0.669 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 1.495 23.042 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.064 0.936 4 C -0.536 4.536 5 H 0.046 0.954 6 C -0.187 4.187 7 N -0.593 5.593 8 Si 0.768 3.232 9 H -0.188 1.188 10 H -0.217 1.217 11 H -0.168 1.168 12 N -0.310 5.310 13 C -0.002 4.002 14 C -0.083 4.083 15 C -0.342 4.342 16 S 0.543 5.457 17 C -0.390 4.390 18 C 0.502 3.498 19 F -0.148 7.148 20 F -0.138 7.138 21 F -0.146 7.146 22 N -0.154 5.154 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.148 0.852 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.365 1.203 23.355 23.627 hybrid contribution -1.528 0.707 -1.065 1.992 sum 1.837 1.911 22.290 22.447 Atomic orbital electron populations 1.22508 0.99200 1.00760 1.00035 1.19493 0.90617 0.94312 0.87970 0.93645 1.21093 1.42504 0.93871 0.96131 0.95427 1.25886 0.94403 1.03750 0.94679 1.70061 1.48586 1.37984 1.02695 0.85792 0.80102 0.79766 0.77506 1.18805 1.21662 1.16773 1.60827 1.58168 1.09307 1.02713 1.20562 1.00188 0.94082 0.85378 1.20224 0.89784 1.00336 0.97917 1.27740 1.01376 1.04637 1.00418 1.83611 1.00971 1.40468 1.20615 1.26764 0.99775 1.09854 1.02628 1.16865 0.76820 0.77429 0.78710 1.93264 1.96288 1.35621 1.89604 1.93252 1.80888 1.96132 1.43535 1.93240 1.37269 1.88319 1.95821 1.65735 1.40260 1.06878 1.02565 0.93082 0.93600 0.93940 0.92610 0.85238 0.93811 0.88133 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.69 9.16 71.98 0.66 -6.03 16 2 C 0.18 8.25 2.23 44.17 0.10 8.34 16 3 H 0.05 1.97 4.95 -2.38 -0.01 1.95 16 4 C -0.50 -27.98 9.19 25.60 0.24 -27.74 16 5 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.54 5.47 84.65 0.46 1.01 16 7 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 8 Si 0.94 42.56 26.99 68.60 1.85 44.41 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.24 -9.99 6.82 99.48 0.68 -9.31 16 12 N -0.68 -26.79 6.22 -499.46 -3.11 -29.90 16 13 C 0.13 3.99 5.92 85.56 0.51 4.50 16 14 C 0.05 1.39 6.25 41.52 0.26 1.65 16 15 C -0.20 -4.21 11.11 66.78 0.74 -3.47 16 16 S 0.29 5.05 22.85 -56.49 -1.29 3.76 16 17 C -0.11 -2.77 6.74 88.52 0.60 -2.17 16 18 C 0.56 12.67 3.55 71.24 0.25 12.92 16 19 F -0.17 -3.94 17.30 44.97 0.78 -3.17 16 20 F -0.16 -2.96 16.99 44.97 0.76 -2.19 16 21 F -0.17 -4.15 17.22 44.97 0.77 -3.38 16 22 N -0.44 -12.76 10.42 -179.40 -1.87 -14.63 16 23 H 0.05 1.76 7.35 -2.39 -0.02 1.74 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.33 13.27 8.47 -89.69 -0.76 12.51 16 28 H 0.04 1.34 7.36 -2.39 -0.02 1.32 16 29 H 0.10 2.78 8.01 -2.38 -0.02 2.76 16 30 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -66.03 289.49 2.43 -63.60 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.41 Total: 11.32 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 3.82 Total: -10.99 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -4.68 Total: -103.37 kcal Atomic # 9 Polarization: -11.05 SS G_CDS: 2.32 Total: -8.73 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.85 Total: 44.41 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.29 Total: 3.76 kcal Total: -66.03 2.43 -63.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461724422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.728 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds