Wall clock time and date at job start Tue Mar 31 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99660 * 2 1 4 4 C 1.53006 * 109.46864 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46935 * 65.00085 * 4 3 2 6 6 C 1.36973 * 119.99846 * 264.47636 * 5 4 3 7 7 H 1.08006 * 119.99915 * 136.44233 * 6 5 4 8 8 C 1.38969 * 120.00220 * 316.43994 * 6 5 4 9 9 N 1.31410 * 120.00423 * 345.59890 * 8 6 5 10 10 Si 1.86804 * 119.99873 * 165.59668 * 8 6 5 11 11 H 1.48507 * 109.47066 * 60.00283 * 10 8 6 12 12 H 1.48499 * 109.47336 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47288 * 300.00130 * 10 8 6 14 14 C 1.34778 * 120.00213 * 84.48753 * 5 4 3 15 15 O 1.21650 * 119.99911 * 3.35258 * 14 5 4 16 16 C 1.47237 * 120.00175 * 183.35162 * 14 5 4 17 17 C 1.36648 * 122.97486 * 338.65085 * 16 14 5 18 18 S 1.70589 * 110.54731 * 180.02562 * 17 16 14 19 19 C 1.75686 * 91.87135 * 359.97438 * 18 17 16 20 20 C 1.43200 * 125.04869 * 180.26906 * 19 18 17 21 21 N 9.01932 * 110.16716 * 278.36917 * 2 1 3 22 22 C 1.34857 * 109.90560 * 359.97438 * 19 18 17 23 23 H 1.08997 * 109.47100 * 299.99767 * 1 2 3 24 24 H 1.09001 * 109.47279 * 60.00410 * 1 2 3 25 25 H 1.09003 * 109.46791 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47115 * 60.00285 * 3 2 1 27 27 H 1.09000 * 109.47155 * 300.00069 * 3 2 1 28 28 H 1.09001 * 109.46758 * 304.99553 * 4 3 2 29 29 H 1.09002 * 109.46686 * 184.99988 * 4 3 2 30 30 H 0.96997 * 120.00392 * 179.97438 * 9 8 6 31 31 H 1.08002 * 124.72572 * 0.03955 * 17 16 14 32 32 H 1.07995 * 123.19123 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2057 -0.7847 -1.3048 7 1 3.8512 -1.3609 -2.1467 8 6 4.8953 -1.4123 -0.2743 9 7 5.5677 -0.6959 0.5983 10 14 4.8663 -3.2745 -0.1295 11 1 5.4373 -3.8758 -1.3615 12 1 5.6729 -3.6923 1.0453 13 1 3.4654 -3.7359 0.0431 14 6 4.1544 1.3216 -2.3534 15 8 4.0095 2.5278 -2.2920 16 6 4.5251 0.6886 -3.6300 17 6 5.1079 -0.5449 -3.7070 18 16 5.4013 -0.9681 -5.3333 19 6 4.7239 0.5469 -5.9099 20 6 4.6183 0.9297 -7.2857 21 7 4.5385 1.2323 -8.3762 22 6 4.3122 1.2930 -4.8647 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1766 0.0889 30 1 6.0487 -1.1339 1.3178 31 1 5.3490 -1.1656 -2.8566 32 1 3.8606 2.2677 -4.9756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468721036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:26 Heat of formation + Delta-G solvation = -1.466157 kcal Electronic energy + Delta-G solvation = -19443.100425 eV Core-core repulsion = 16303.767799 eV Total energy + Delta-G solvation = -3139.332626 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.29702 -37.46138 -36.80781 -35.77803 -34.89111 -31.79310 -30.47513 -28.66102 -25.91564 -25.53442 -24.33467 -22.94422 -20.76988 -18.97145 -18.74665 -16.98008 -16.40234 -15.73219 -15.58661 -15.07401 -14.54536 -14.40293 -14.18896 -14.04108 -13.76640 -13.37897 -13.04034 -12.68747 -12.25174 -12.17943 -11.98091 -11.91673 -11.59767 -11.21534 -11.19766 -11.05117 -10.83512 -10.67868 -10.50813 -10.15950 -9.25714 -9.05304 -8.65615 -8.47781 -8.13492 -7.57566 -6.52287 -4.25524 0.85638 1.50810 2.22066 2.37401 3.04486 3.10056 3.13780 3.17443 3.47096 3.94624 4.10160 4.28736 4.43455 4.67772 4.95421 5.60709 5.63353 5.67463 5.81064 5.93057 5.97498 5.98853 6.03263 6.22930 6.29839 6.56463 6.69849 6.76864 7.12711 7.25824 7.60289 7.71871 7.88757 8.18210 8.89002 9.33472 9.76204 10.49642 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.006748 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.424712 B = 4148.239819 C = 5079.029908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.121 3.879 5 N -0.418 5.418 6 C -0.332 4.332 7 H 0.096 0.904 8 C 0.050 3.950 9 N -0.854 5.854 10 Si 0.911 3.089 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.529 3.471 15 O -0.603 6.603 16 C -0.142 4.142 17 C -0.159 4.159 18 S 0.195 5.805 19 C -0.201 4.201 20 C 0.298 3.702 21 N -0.433 5.433 22 C -0.007 4.007 23 H 0.030 0.970 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.274 0.726 31 H 0.220 0.780 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -3.045 -1.803 4.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.028 4.028 4 C -0.003 4.003 5 N -0.134 5.134 6 C -0.461 4.461 7 H 0.113 0.887 8 C -0.158 4.158 9 N -0.489 5.489 10 Si 0.737 3.263 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.317 3.683 15 O -0.491 6.491 16 C -0.157 4.157 17 C -0.298 4.298 18 S 0.462 5.538 19 C -0.320 4.320 20 C -0.017 4.017 21 N -0.111 5.111 22 C -0.043 4.043 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.236 0.764 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.359 -3.472 -3.943 5.759 hybrid contribution -0.907 0.431 1.470 1.780 sum -3.266 -3.041 -2.474 5.102 Atomic orbital electron populations 1.22648 0.83273 1.01789 0.98910 1.88117 1.17510 1.27720 1.95073 1.23059 0.96410 0.84392 0.98891 1.21420 0.89150 0.99226 0.90507 1.43088 1.55752 1.07197 1.07372 1.19454 1.34654 0.82620 1.09328 0.88690 1.25437 0.94086 1.00052 0.96256 1.69843 1.27284 1.36637 1.15135 0.86251 0.79008 0.82676 0.78399 1.19455 1.20720 1.19251 1.17703 0.80783 0.85759 0.84028 1.90639 1.58203 1.14157 1.86058 1.19086 1.06495 0.95350 0.94720 1.28040 0.99507 1.01301 1.00958 1.83036 1.57178 1.14559 0.99009 1.19708 1.19741 1.03481 0.89097 1.24350 0.92840 0.93327 0.91210 1.81162 1.10439 1.08296 1.11173 1.20359 0.95037 0.99556 0.89381 0.95117 0.94924 0.90388 0.94085 0.93947 0.87284 0.90812 0.91567 0.76358 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.27 10.44 -35.23 -0.37 -7.63 16 3 C 0.05 0.97 6.24 37.16 0.23 1.20 16 4 C 0.12 2.67 5.28 -4.04 -0.02 2.65 16 5 N -0.42 -9.66 2.44 -116.09 -0.28 -9.95 16 6 C -0.33 -7.47 6.02 -14.98 -0.09 -7.56 16 7 H 0.10 2.04 5.86 -52.48 -0.31 1.73 16 8 C 0.05 1.12 5.01 -17.46 -0.09 1.04 16 9 N -0.85 -20.53 11.56 55.50 0.64 -19.89 16 10 Si 0.91 17.66 29.58 -169.99 -5.03 12.64 16 11 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 12 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 14 C 0.53 12.18 7.51 -12.60 -0.09 12.09 16 15 O -0.60 -15.09 16.49 5.23 0.09 -15.01 16 16 C -0.14 -2.77 5.65 -106.49 -0.60 -3.37 16 17 C -0.16 -2.76 8.80 30.16 0.27 -2.49 16 18 S 0.20 2.73 23.03 -107.50 -2.48 0.25 16 19 C -0.20 -3.10 6.24 -38.86 -0.24 -3.34 16 20 C 0.30 4.68 15.78 -22.52 -0.36 4.33 16 21 N -0.43 -7.31 18.53 41.78 0.77 -6.54 16 22 C -0.01 -0.12 9.75 -40.46 -0.39 -0.51 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.11 2.57 5.81 -51.93 -0.30 2.26 16 29 H 0.07 1.65 7.55 -51.93 -0.39 1.26 16 30 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 31 H 0.22 4.04 4.99 -52.49 -0.26 3.78 16 32 H 0.15 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -26.90 301.96 -5.31 -32.21 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -2.93 Total: 3.75 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.28 Total: 5.61 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.13 Total: -36.38 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.28 Total: -22.64 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.48 Total: 0.25 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.90 -5.31 -32.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468721036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.749 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds