Wall clock time and date at job start Tue Mar 31 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99660 * 2 1 4 4 C 1.53006 * 109.46864 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46935 * 65.00085 * 4 3 2 6 6 C 1.36973 * 119.99846 * 264.47636 * 5 4 3 7 7 H 1.08006 * 119.99915 * 136.44233 * 6 5 4 8 8 C 1.38969 * 120.00220 * 316.43994 * 6 5 4 9 9 N 1.31410 * 120.00423 * 345.59890 * 8 6 5 10 10 Si 1.86804 * 119.99873 * 165.59668 * 8 6 5 11 11 H 1.48507 * 109.47066 * 60.00283 * 10 8 6 12 12 H 1.48499 * 109.47336 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47288 * 300.00130 * 10 8 6 14 14 C 1.34778 * 120.00213 * 84.48753 * 5 4 3 15 15 O 1.21650 * 119.99911 * 3.35258 * 14 5 4 16 16 C 1.47237 * 120.00175 * 183.35162 * 14 5 4 17 17 C 1.36648 * 122.97486 * 338.65085 * 16 14 5 18 18 S 1.70589 * 110.54731 * 180.02562 * 17 16 14 19 19 C 1.75686 * 91.87135 * 359.97438 * 18 17 16 20 20 C 1.43200 * 125.04869 * 180.26906 * 19 18 17 21 21 N 9.01932 * 110.16716 * 278.36917 * 2 1 3 22 22 C 1.34857 * 109.90560 * 359.97438 * 19 18 17 23 23 H 1.08997 * 109.47100 * 299.99767 * 1 2 3 24 24 H 1.09001 * 109.47279 * 60.00410 * 1 2 3 25 25 H 1.09003 * 109.46791 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47115 * 60.00285 * 3 2 1 27 27 H 1.09000 * 109.47155 * 300.00069 * 3 2 1 28 28 H 1.09001 * 109.46758 * 304.99553 * 4 3 2 29 29 H 1.09002 * 109.46686 * 184.99988 * 4 3 2 30 30 H 0.96997 * 120.00392 * 179.97438 * 9 8 6 31 31 H 1.08002 * 124.72572 * 0.03955 * 17 16 14 32 32 H 1.07995 * 123.19123 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2057 -0.7847 -1.3048 7 1 3.8512 -1.3609 -2.1467 8 6 4.8953 -1.4123 -0.2743 9 7 5.5677 -0.6959 0.5983 10 14 4.8663 -3.2745 -0.1295 11 1 5.4373 -3.8758 -1.3615 12 1 5.6729 -3.6923 1.0453 13 1 3.4654 -3.7359 0.0431 14 6 4.1544 1.3216 -2.3534 15 8 4.0095 2.5278 -2.2920 16 6 4.5251 0.6886 -3.6300 17 6 5.1079 -0.5449 -3.7070 18 16 5.4013 -0.9681 -5.3333 19 6 4.7239 0.5469 -5.9099 20 6 4.6183 0.9297 -7.2857 21 7 4.5385 1.2323 -8.3762 22 6 4.3122 1.2930 -4.8647 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1766 0.0889 30 1 6.0487 -1.1339 1.3178 31 1 5.3490 -1.1656 -2.8566 32 1 3.8606 2.2677 -4.9756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468721036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:26 Heat of formation + Delta-G solvation = -17.076988 kcal Electronic energy + Delta-G solvation = -19443.777362 eV Core-core repulsion = 16303.767799 eV Total energy + Delta-G solvation = -3140.009563 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93076 -38.89788 -38.25244 -37.17472 -36.64238 -33.52983 -31.95280 -30.15076 -27.37498 -27.03429 -25.81914 -24.49006 -22.34438 -20.64511 -20.09585 -18.56113 -17.90130 -17.20135 -17.12715 -16.54294 -16.14705 -15.94643 -15.72365 -15.42198 -15.17618 -14.86349 -14.54092 -14.08119 -13.72823 -13.59120 -13.39779 -13.31245 -13.18857 -12.87713 -12.70015 -12.50989 -12.29605 -12.12051 -12.01237 -11.75682 -10.96181 -10.52194 -10.37509 -9.79069 -9.49048 -9.28093 -8.23634 -6.02154 -0.47273 0.26032 0.86700 0.91394 1.52099 1.59087 1.64428 1.80482 2.14905 2.34651 2.59212 2.78744 3.01352 3.07129 3.29915 4.22166 4.29129 4.33810 4.50357 4.54994 4.57179 4.61127 4.64773 4.75891 4.84591 4.94323 5.20711 5.32191 5.40995 5.51407 6.05932 6.33183 6.42194 6.44123 7.15415 7.59612 8.02704 8.79526 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.006748 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.424712 B = 4148.239819 C = 5079.029908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.062 3.938 4 C 0.118 3.882 5 N -0.427 5.427 6 C -0.336 4.336 7 H 0.106 0.894 8 C 0.013 3.987 9 N -0.890 5.890 10 Si 0.968 3.032 11 H -0.247 1.247 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.515 3.485 15 O -0.637 6.637 16 C -0.167 4.167 17 C -0.171 4.171 18 S 0.309 5.691 19 C -0.198 4.198 20 C 0.312 3.688 21 N -0.448 5.448 22 C -0.016 4.016 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.273 0.727 31 H 0.211 0.789 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 -4.992 -3.253 6.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.015 4.015 4 C -0.005 4.005 5 N -0.143 5.143 6 C -0.465 4.465 7 H 0.123 0.877 8 C -0.191 4.191 9 N -0.527 5.527 10 Si 0.791 3.209 11 H -0.170 1.170 12 H -0.214 1.214 13 H -0.198 1.198 14 C 0.305 3.695 15 O -0.527 6.527 16 C -0.182 4.182 17 C -0.311 4.311 18 S 0.577 5.423 19 C -0.318 4.318 20 C -0.003 4.003 21 N -0.126 5.126 22 C -0.052 4.052 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.227 0.773 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.591 -5.439 -5.406 8.095 hybrid contribution -0.842 1.013 1.841 2.263 sum -3.433 -4.426 -3.566 6.640 Atomic orbital electron populations 1.22881 0.80666 1.03353 1.00194 1.88049 1.20400 1.27697 1.95317 1.22835 0.94463 0.84682 0.99541 1.21350 0.91248 0.97910 0.90029 1.43303 1.55736 1.07677 1.07591 1.19713 1.34561 0.82438 1.09763 0.87726 1.26126 0.93558 1.03625 0.95772 1.69957 1.28577 1.38180 1.15947 0.85367 0.78423 0.78159 0.78918 1.17016 1.21415 1.19849 1.18276 0.80327 0.85604 0.85330 1.90591 1.59684 1.15518 1.86865 1.18883 1.08837 0.96631 0.93812 1.27803 0.99154 1.00341 1.03818 1.82646 1.53808 1.11466 0.94411 1.19754 1.19119 1.04407 0.88524 1.24203 0.92328 0.92813 0.90909 1.81192 1.10895 1.08748 1.11793 1.20205 0.96058 0.99912 0.89011 0.93070 0.94328 0.88740 0.91521 0.95001 0.88916 0.92335 0.91764 0.77326 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.40 -15.57 10.44 -148.98 -1.56 -17.13 16 3 C 0.06 2.45 6.24 71.98 0.45 2.90 16 4 C 0.12 5.44 5.28 86.38 0.46 5.90 16 5 N -0.43 -20.29 2.44 -639.43 -1.56 -21.85 16 6 C -0.34 -15.21 6.02 84.07 0.51 -14.70 16 7 H 0.11 4.41 5.86 -2.91 -0.02 4.40 16 8 C 0.01 0.61 5.01 84.93 0.43 1.03 16 9 N -0.89 -43.78 11.56 21.67 0.25 -43.53 16 10 Si 0.97 35.48 29.58 68.60 2.03 37.51 16 11 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 12 H -0.29 -10.81 7.11 99.48 0.71 -10.10 16 13 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 14 C 0.51 24.37 7.51 86.61 0.65 25.03 16 15 O -0.64 -33.13 16.49 -4.19 -0.07 -33.20 16 16 C -0.17 -6.45 5.65 -21.08 -0.12 -6.57 16 17 C -0.17 -5.66 8.80 67.45 0.59 -5.07 16 18 S 0.31 7.50 23.03 -56.49 -1.30 6.20 16 19 C -0.20 -5.62 6.24 22.74 0.14 -5.48 16 20 C 0.31 9.05 15.78 88.35 1.39 10.44 16 21 N -0.45 -14.15 18.53 18.99 0.35 -13.80 16 22 C -0.02 -0.53 9.75 21.70 0.21 -0.31 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 4.55 5.81 -2.39 -0.01 4.54 16 29 H 0.06 2.78 7.55 -2.39 -0.02 2.76 16 30 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 31 H 0.21 7.44 4.99 -2.91 -0.01 7.42 16 32 H 0.15 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -58.79 301.96 5.27 -53.53 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.17 Total: 17.13 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.96 Total: 15.13 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -0.96 Total: -79.18 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -1.62 Total: -50.32 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Atomic # 16 Polarization: 7.50 SS G_CDS: -1.30 Total: 6.20 kcal Total: -58.79 5.27 -53.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468721036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.448 kcal (2) G-P(sol) polarization free energy of solvation -58.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds