Wall clock time and date at job start Tue Mar 31 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86805 * 119.99746 * 2 1 4 4 H 1.48506 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46968 * 300.00477 * 3 2 1 6 6 H 1.48494 * 109.46843 * 60.00497 * 3 2 1 7 7 C 1.40130 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.41357 * 119.99827 * 359.97438 * 7 2 1 10 10 O 1.21837 * 119.99931 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00128 * 180.02562 * 9 7 2 12 12 C 1.39050 * 119.99778 * 184.53067 * 11 9 7 13 13 C 1.39750 * 119.76332 * 144.77614 * 12 11 9 14 14 C 1.36313 * 120.43686 * 180.02562 * 13 12 11 15 15 C 1.40016 * 119.88152 * 0.02562 * 14 13 12 16 16 C 1.46198 * 133.89003 * 179.97438 * 15 14 13 17 17 C 1.34716 * 107.02221 * 180.02562 * 16 15 14 18 18 N 1.36648 * 109.91962 * 359.97438 * 17 16 15 19 19 C 1.46493 * 125.07180 * 180.02562 * 18 17 16 20 20 F 1.39907 * 109.47024 * 240.02062 * 19 18 17 21 21 F 1.39904 * 109.47017 * 120.02560 * 19 18 17 22 22 C 1.37862 * 109.85090 * 0.26266 * 18 17 16 23 23 C 1.38758 * 133.40169 * 180.45875 * 22 18 17 24 24 H 0.96997 * 120.00416 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99530 * 4.52755 * 11 9 7 26 26 H 1.08005 * 119.77959 * 0.02562 * 13 12 11 27 27 H 1.07994 * 120.05534 * 180.02562 * 14 13 12 28 28 H 1.07997 * 126.49126 * 359.97438 * 16 15 14 29 29 H 1.07998 * 125.04189 * 180.02562 * 17 16 15 30 30 H 1.08993 * 109.47539 * 0.02562 * 19 18 17 31 31 H 1.08004 * 120.14106 * 359.29021 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 -0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0071 -1.2135 -0.0005 8 1 3.0871 -1.2135 -0.0010 9 6 1.3003 -2.4377 -0.0005 10 8 0.0820 -2.4378 0.0004 11 7 1.9743 -3.6050 -0.0005 12 6 1.2822 -4.8073 -0.0957 13 6 1.8417 -5.8758 -0.8015 14 6 1.1751 -7.0604 -0.9039 15 6 -0.0789 -7.2097 -0.2991 16 6 -1.0389 -8.3090 -0.2145 17 6 -2.0852 -7.8642 0.5081 18 7 -1.8697 -6.5704 0.8916 19 6 -2.7957 -5.7639 1.6903 20 9 -3.1760 -4.6318 0.9616 21 9 -2.1656 -5.3662 2.8745 22 6 -0.6532 -6.1358 0.4100 23 6 0.0395 -4.9378 0.5115 24 1 -0.4850 0.8400 0.0004 25 1 2.9420 -3.6062 0.0658 26 1 2.8087 -5.7622 -1.2690 27 1 1.6134 -7.8822 -1.4505 28 1 -0.9303 -9.2915 -0.6497 29 1 -2.9636 -8.4443 0.7494 30 1 -3.6792 -6.3555 1.9300 31 1 -0.3883 -4.1085 1.0553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469906742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:53 Heat of formation + Delta-G solvation = -88.720638 kcal Electronic energy + Delta-G solvation = -21399.611306 eV Core-core repulsion = 17702.654655 eV Total energy + Delta-G solvation = -3696.956651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.22159 -48.36489 -42.08970 -40.20454 -37.69685 -35.09056 -34.37182 -32.81351 -31.14225 -29.71352 -27.88503 -26.52083 -24.06811 -22.84905 -21.80313 -21.35003 -19.80897 -18.85370 -18.72229 -18.48403 -17.71211 -17.41798 -16.67781 -16.12485 -15.83593 -15.43355 -15.13000 -15.03366 -14.89421 -14.71174 -14.60286 -14.27419 -14.02661 -13.76509 -13.23291 -13.13930 -12.94201 -12.75168 -12.64004 -12.61057 -12.00500 -11.95513 -11.10610 -10.86139 -10.16996 -9.78863 -9.03955 -8.40488 -8.30509 -7.04914 0.27424 0.63325 1.33888 1.36373 1.36889 1.56210 1.76161 2.18939 2.36420 2.65157 2.94556 3.02503 3.27921 3.60395 3.69237 3.74808 3.94489 4.22395 4.45444 4.55933 4.71102 4.72478 5.05000 5.10757 5.18857 5.47546 5.59801 5.69794 5.83366 5.87134 6.00445 6.18006 6.29756 6.48162 6.70409 7.40395 8.37468 8.55638 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.005468 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.426785 B = 5119.461034 C = 6105.722513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.029 3.971 3 Si 1.005 2.995 4 H -0.243 1.243 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.564 4.564 8 H 0.093 0.907 9 C 0.524 3.476 10 O -0.614 6.614 11 N -0.693 5.693 12 C 0.172 3.828 13 C -0.177 4.177 14 C -0.050 4.050 15 C -0.149 4.149 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.544 5.544 19 C 0.465 3.535 20 F -0.212 7.212 21 F -0.209 7.209 22 C 0.086 3.914 23 C -0.175 4.175 24 H 0.278 0.722 25 H 0.407 0.593 26 H 0.149 0.851 27 H 0.166 0.834 28 H 0.188 0.812 29 H 0.229 0.771 30 H 0.226 0.774 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -16.207 1.136 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.189 4.189 3 Si 0.824 3.176 4 H -0.166 1.166 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.111 0.889 9 C 0.334 3.666 10 O -0.501 6.501 11 N -0.338 5.338 12 C 0.073 3.927 13 C -0.198 4.198 14 C -0.069 4.069 15 C -0.154 4.154 16 C -0.208 4.208 17 C -0.071 4.071 18 N -0.241 5.241 19 C 0.330 3.670 20 F -0.193 7.193 21 F -0.190 7.190 22 C -0.018 4.018 23 C -0.199 4.199 24 H 0.088 0.912 25 H 0.243 0.757 26 H 0.166 0.834 27 H 0.183 0.817 28 H 0.205 0.795 29 H 0.245 0.755 30 H 0.242 0.758 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.347 -15.834 1.327 16.239 hybrid contribution 0.607 1.602 0.256 1.732 sum -2.741 -14.232 1.583 14.580 Atomic orbital electron populations 1.70207 1.09916 1.29405 1.33700 1.27116 0.95484 1.05415 0.90865 0.84865 0.79435 0.74627 0.78700 1.16561 1.19070 1.19185 1.20544 0.95622 0.90560 1.53192 0.88907 1.17438 0.87412 0.83976 0.77795 1.90642 1.15608 1.87072 1.56796 1.43562 1.10036 1.03863 1.76316 1.17910 0.92683 0.87303 0.94822 1.20800 1.03060 0.93246 1.02694 1.20455 0.92010 0.97177 0.97263 1.19746 0.97358 0.94461 1.03815 1.22174 0.93165 0.99367 1.06098 1.22680 1.02609 0.81839 0.99965 1.45395 1.16217 1.14051 1.48419 1.22406 0.90458 0.80654 0.73469 1.93116 1.90936 1.56452 1.78837 1.93064 1.85463 1.92185 1.48335 1.18328 0.87959 0.95379 1.00105 1.20077 0.97967 0.95475 1.06420 0.91158 0.75702 0.83381 0.81656 0.79530 0.75461 0.75779 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -50.09 11.72 21.85 0.26 -49.83 16 2 C 0.03 1.63 5.50 85.33 0.47 2.10 16 3 Si 1.01 40.97 29.56 68.60 2.03 43.00 16 4 H -0.24 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.56 -32.58 9.29 23.50 0.22 -32.36 16 8 H 0.09 4.73 7.85 -2.91 -0.02 4.71 16 9 C 0.52 32.03 7.39 85.01 0.63 32.65 16 10 O -0.61 -43.03 12.27 -4.79 -0.06 -43.09 16 11 N -0.69 -34.44 5.28 -311.60 -1.65 -36.09 16 12 C 0.17 8.08 6.30 38.53 0.24 8.32 16 13 C -0.18 -6.34 9.89 22.19 0.22 -6.12 16 14 C -0.05 -1.54 10.05 22.25 0.22 -1.32 16 15 C -0.15 -4.96 6.38 -20.12 -0.13 -5.09 16 16 C -0.18 -4.22 11.09 23.53 0.26 -3.96 16 17 C 0.05 1.00 11.24 83.13 0.93 1.93 16 18 N -0.54 -17.22 3.04 -533.81 -1.62 -18.84 16 19 C 0.46 13.43 6.00 127.77 0.77 14.20 16 20 F -0.21 -8.35 17.47 44.97 0.79 -7.56 16 21 F -0.21 -7.39 17.48 44.97 0.79 -6.60 16 22 C 0.09 3.53 6.70 38.98 0.26 3.79 16 23 C -0.17 -8.90 8.62 22.56 0.19 -8.71 16 24 H 0.28 15.56 8.29 -92.71 -0.77 14.79 16 25 H 0.41 16.87 8.77 -92.71 -0.81 16.05 16 26 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 27 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 28 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.23 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.23 2.83 8.05 -2.39 -0.02 2.81 16 31 H 0.09 5.30 6.20 -2.91 -0.02 5.28 16 Total: -1.00 -90.76 287.96 5.20 -85.56 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.38 Total: 28.00 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.29 Total: 5.45 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.01 Total: -104.76 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.06 Total: -43.09 kcal Atomic # 9 Polarization: -15.73 SS G_CDS: 1.57 Total: -14.16 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -90.76 5.20 -85.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469906742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.159 kcal (2) G-P(sol) polarization free energy of solvation -90.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds