Wall clock time and date at job start Tue Mar 31 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47155 * 300.00510 * 3 2 1 6 6 H 1.48501 * 109.47283 * 60.00515 * 3 2 1 7 7 C 1.39895 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99952 * 163.15567 * 7 2 1 9 9 C 1.41153 * 120.00085 * 343.16056 * 7 2 1 10 10 C 1.40871 * 120.15990 * 334.64011 * 9 7 2 11 11 C 1.36373 * 119.82814 * 180.27810 * 10 9 7 12 12 C 1.39485 * 120.16733 * 359.52144 * 11 10 9 13 13 N 1.39247 * 119.83635 * 180.21322 * 12 11 10 14 14 C 1.34772 * 120.00125 * 145.76523 * 13 12 11 15 15 O 1.21582 * 120.00097 * 354.85612 * 14 13 12 16 16 N 1.34773 * 120.00043 * 174.85460 * 14 13 12 17 17 C 1.46499 * 120.00194 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47008 * 180.02562 * 17 16 14 19 19 C 1.31158 * 120.00123 * 125.00231 * 18 17 16 20 20 Cl 1.73605 * 119.99803 * 179.97438 * 19 18 17 21 21 C 1.39483 * 120.33087 * 0.45917 * 12 11 10 22 22 C 1.36373 * 120.17102 * 359.79646 * 21 12 11 23 23 H 0.96999 * 119.99899 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.08798 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.91685 * 179.72712 * 11 10 9 26 26 H 0.96997 * 119.99261 * 325.76888 * 13 12 11 27 27 H 0.97005 * 120.00173 * 359.97438 * 16 14 13 28 28 H 1.09002 * 109.47013 * 299.99781 * 17 16 14 29 29 H 1.08993 * 109.47128 * 59.99931 * 17 16 14 30 30 H 1.08001 * 119.99678 * 304.99054 * 18 17 16 31 31 H 1.07995 * 119.99822 * 359.97438 * 19 18 17 32 32 H 1.08003 * 119.91174 * 179.77616 * 21 12 11 33 33 H 1.07999 * 120.08639 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8841 2.3964 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0536 -1.2314 -0.2716 9 6 1.3479 -2.4079 0.3530 10 6 0.2150 -2.3704 1.1894 11 6 -0.4144 -3.5309 1.5313 12 6 0.0550 -4.7519 1.0471 13 7 -0.5956 -5.9322 1.3971 14 6 -0.6667 -6.9493 0.5157 15 8 -0.2461 -6.8038 -0.6158 16 7 -1.2041 -8.1277 0.8885 17 6 -1.2810 -9.2335 -0.0694 18 6 -1.9190 -10.4278 0.5922 19 6 -2.9738 -10.9906 0.0528 20 17 -3.7083 -12.3668 0.8147 21 6 1.1760 -4.7969 0.2182 22 6 1.8189 -3.6452 -0.1281 23 1 -0.4850 0.8400 0.0004 24 1 -0.1518 -1.4255 1.5621 25 1 -1.2805 -3.5042 2.1759 26 1 -0.9976 -6.0223 2.2752 27 1 -1.5393 -8.2440 1.7913 28 1 -1.8812 -8.9301 -0.9272 29 1 -0.2770 -9.4957 -0.4030 30 1 -1.5076 -10.8202 1.5104 31 1 -3.3853 -10.5980 -0.8652 32 1 1.5358 -5.7464 -0.1499 33 1 2.6870 -3.6817 -0.7697 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475839153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:06 Heat of formation + Delta-G solvation = 1.545247 kcal Electronic energy + Delta-G solvation = -18121.873799 eV Core-core repulsion = 14980.628051 eV Total energy + Delta-G solvation = -3141.245749 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91712 -37.61307 -37.11471 -35.64851 -34.35440 -33.12095 -32.32994 -29.55216 -28.86049 -26.33526 -24.52516 -21.69974 -20.89307 -20.81745 -19.94630 -17.98438 -17.26028 -17.00290 -16.10388 -15.34744 -15.19112 -14.70146 -14.40518 -13.92194 -13.74379 -13.25777 -12.92829 -12.68275 -12.52766 -12.07036 -11.94899 -11.81074 -11.31256 -11.22278 -11.12139 -10.98178 -10.71898 -10.09637 -9.69224 -9.57729 -9.48358 -9.18291 -8.96253 -8.88442 -7.51527 -6.93951 -6.71209 -4.26963 1.35647 1.87492 2.67663 3.07266 3.09005 3.12124 3.14750 3.21250 3.70281 3.95116 4.46806 4.61136 4.66416 4.73790 5.19836 5.44969 5.72118 5.76378 5.90796 6.21642 6.42294 6.51194 6.79403 6.81614 7.06578 7.13903 7.29520 7.38190 7.63664 7.88699 7.98942 8.07555 8.30951 8.48218 8.63010 8.91428 8.93304 9.10973 10.20708 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.066216 B = 0.002534 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.756814 B =11046.537743 C =11211.503940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.103 3.897 10 C -0.153 4.153 11 C -0.115 4.115 12 C 0.012 3.988 13 N -0.665 5.665 14 C 0.694 3.306 15 O -0.577 6.577 16 N -0.752 5.752 17 C 0.175 3.825 18 C -0.157 4.157 19 C -0.088 4.088 20 Cl -0.093 7.093 21 C -0.076 4.076 22 C -0.214 4.214 23 H 0.279 0.721 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.391 0.609 27 H 0.394 0.606 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.151 0.849 32 H 0.101 0.899 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 -15.949 4.324 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.096 0.904 9 C 0.101 3.899 10 C -0.172 4.172 11 C -0.136 4.136 12 C -0.081 4.081 13 N -0.311 5.311 14 C 0.395 3.605 15 O -0.454 6.454 16 N -0.410 5.410 17 C 0.051 3.949 18 C -0.176 4.176 19 C -0.133 4.133 20 Cl -0.064 7.064 21 C -0.097 4.097 22 C -0.234 4.234 23 H 0.090 0.910 24 H 0.139 0.861 25 H 0.108 0.892 26 H 0.224 0.776 27 H 0.228 0.772 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.119 0.881 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.751 -15.780 3.299 17.117 hybrid contribution -0.223 0.510 0.834 1.003 sum -5.974 -15.270 4.134 16.910 Atomic orbital electron populations 1.69858 1.07538 1.29032 1.35572 1.25921 0.94747 1.01325 0.92385 0.86265 0.80991 0.80984 0.78495 1.18411 1.20046 1.19760 1.19574 0.97802 0.91121 1.40239 0.90368 1.17663 0.91397 0.92163 0.88703 1.20885 0.99312 0.96270 1.00779 1.20199 0.99231 0.91676 1.02451 1.16957 0.97551 0.83166 1.10410 1.42098 1.58979 1.13967 1.16024 1.15991 0.79449 0.80211 0.84883 1.90934 1.53614 1.81980 1.18854 1.45034 1.68199 1.11940 1.15780 1.19983 1.01120 0.82699 0.91142 1.23279 0.95914 0.97290 1.01160 1.24537 0.96854 0.91583 1.00361 1.98381 1.82647 1.43896 1.81500 1.20247 0.93708 0.97698 0.98012 1.20651 1.03755 0.92628 1.06413 0.90976 0.86082 0.89231 0.77580 0.77229 0.90913 0.89996 0.85411 0.83157 0.88065 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.60 10.95 55.55 0.61 -19.99 16 2 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16 3 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.21 9.04 -37.86 -0.34 -12.55 16 8 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 9 C 0.10 2.79 5.57 -106.80 -0.59 2.20 16 10 C -0.15 -3.93 8.63 -39.26 -0.34 -4.27 16 11 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 12 C 0.01 0.26 6.27 -83.56 -0.52 -0.26 16 13 N -0.66 -11.70 5.31 -14.10 -0.07 -11.77 16 14 C 0.69 12.18 8.28 -86.93 -0.72 11.46 16 15 O -0.58 -12.79 14.07 5.29 0.07 -12.71 16 16 N -0.75 -8.96 5.55 -66.42 -0.37 -9.33 16 17 C 0.18 1.78 6.11 -5.19 -0.03 1.75 16 18 C -0.16 -1.16 9.36 -36.07 -0.34 -1.50 16 19 C -0.09 -0.63 10.43 28.97 0.30 -0.33 16 20 Cl -0.09 -0.72 29.10 -51.86 -1.51 -2.23 16 21 C -0.08 -1.86 8.57 -39.79 -0.34 -2.20 16 22 C -0.21 -5.50 9.74 -39.26 -0.38 -5.88 16 23 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 24 H 0.12 3.19 6.18 -52.49 -0.32 2.87 16 25 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.39 5.30 8.83 -40.82 -0.36 4.94 16 27 H 0.39 3.47 8.48 -40.82 -0.35 3.12 16 28 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.15 0.92 7.84 -52.49 -0.41 0.50 16 32 H 0.10 2.43 6.47 -52.48 -0.34 2.09 16 33 H 0.09 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 307.04 15.07 4.63 4.63 Total: -1.00 -31.05 307.04 -8.89 -39.94 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.43 Total: 10.69 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.79 Total: -12.86 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.16 Total: -41.09 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.71 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.51 Total: -2.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.05 -8.89 -39.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.488 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds