Wall clock time and date at job start Tue Mar 31 2020 01:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47155 * 300.00510 * 3 2 1 6 6 H 1.48501 * 109.47283 * 60.00515 * 3 2 1 7 7 C 1.39895 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99952 * 163.15567 * 7 2 1 9 9 C 1.41153 * 120.00085 * 343.16056 * 7 2 1 10 10 C 1.40871 * 120.15990 * 334.64011 * 9 7 2 11 11 C 1.36373 * 119.82814 * 180.27810 * 10 9 7 12 12 C 1.39485 * 120.16733 * 359.52144 * 11 10 9 13 13 N 1.39247 * 119.83635 * 180.21322 * 12 11 10 14 14 C 1.34772 * 120.00125 * 145.76523 * 13 12 11 15 15 O 1.21582 * 120.00097 * 354.85612 * 14 13 12 16 16 N 1.34773 * 120.00043 * 174.85460 * 14 13 12 17 17 C 1.46499 * 120.00194 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47008 * 180.02562 * 17 16 14 19 19 C 1.31158 * 120.00123 * 125.00231 * 18 17 16 20 20 Cl 1.73605 * 119.99803 * 179.97438 * 19 18 17 21 21 C 1.39483 * 120.33087 * 0.45917 * 12 11 10 22 22 C 1.36373 * 120.17102 * 359.79646 * 21 12 11 23 23 H 0.96999 * 119.99899 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.08798 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.91685 * 179.72712 * 11 10 9 26 26 H 0.96997 * 119.99261 * 325.76888 * 13 12 11 27 27 H 0.97005 * 120.00173 * 359.97438 * 16 14 13 28 28 H 1.09002 * 109.47013 * 299.99781 * 17 16 14 29 29 H 1.08993 * 109.47128 * 59.99931 * 17 16 14 30 30 H 1.08001 * 119.99678 * 304.99054 * 18 17 16 31 31 H 1.07995 * 119.99822 * 359.97438 * 19 18 17 32 32 H 1.08003 * 119.91174 * 179.77616 * 21 12 11 33 33 H 1.07999 * 120.08639 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8841 2.3964 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0536 -1.2314 -0.2716 9 6 1.3479 -2.4079 0.3530 10 6 0.2150 -2.3704 1.1894 11 6 -0.4144 -3.5309 1.5313 12 6 0.0550 -4.7519 1.0471 13 7 -0.5956 -5.9322 1.3971 14 6 -0.6667 -6.9493 0.5157 15 8 -0.2461 -6.8038 -0.6158 16 7 -1.2041 -8.1277 0.8885 17 6 -1.2810 -9.2335 -0.0694 18 6 -1.9190 -10.4278 0.5922 19 6 -2.9738 -10.9906 0.0528 20 17 -3.7083 -12.3668 0.8147 21 6 1.1760 -4.7969 0.2182 22 6 1.8189 -3.6452 -0.1281 23 1 -0.4850 0.8400 0.0004 24 1 -0.1518 -1.4255 1.5621 25 1 -1.2805 -3.5042 2.1759 26 1 -0.9976 -6.0223 2.2752 27 1 -1.5393 -8.2440 1.7913 28 1 -1.8812 -8.9301 -0.9272 29 1 -0.2770 -9.4957 -0.4030 30 1 -1.5076 -10.8202 1.5104 31 1 -3.3853 -10.5980 -0.8652 32 1 1.5358 -5.7464 -0.1499 33 1 2.6870 -3.6817 -0.7697 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475839153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:05 Heat of formation + Delta-G solvation = -18.156393 kcal Electronic energy + Delta-G solvation = -18122.728127 eV Core-core repulsion = 14980.628051 eV Total energy + Delta-G solvation = -3142.100076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38106 -39.29138 -37.84921 -36.72788 -36.01550 -34.78360 -33.39850 -31.44767 -30.67540 -27.55176 -26.12264 -23.43593 -22.63011 -21.81341 -21.24512 -19.41887 -19.08451 -18.35051 -17.21334 -16.92345 -16.61257 -15.91765 -15.72773 -15.55567 -14.84525 -14.75549 -14.45987 -14.03307 -13.91912 -13.62398 -13.29388 -13.17601 -12.80660 -12.76954 -12.62241 -12.45568 -11.83195 -11.78453 -11.43345 -11.25040 -11.03740 -10.70079 -10.35498 -9.97944 -9.44374 -8.79881 -8.56971 -6.24516 0.70390 0.88027 1.16735 1.25715 1.40873 1.48681 1.56222 1.96247 2.20614 2.24544 2.78416 3.45741 3.75618 3.87827 4.00230 4.41293 4.43227 4.51985 4.64945 4.94814 5.12328 5.13190 5.17853 5.25060 5.32603 5.45592 5.48017 5.67009 5.81848 6.06136 6.12847 6.26080 6.40656 6.68457 6.95813 7.02796 7.17012 7.67049 8.36106 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.066216 B = 0.002534 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.756814 B =11046.537743 C =11211.503940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.495 4.495 8 H 0.073 0.927 9 C 0.072 3.928 10 C -0.170 4.170 11 C -0.113 4.113 12 C 0.029 3.971 13 N -0.658 5.658 14 C 0.693 3.307 15 O -0.625 6.625 16 N -0.727 5.727 17 C 0.175 3.825 18 C -0.151 4.151 19 C -0.082 4.082 20 Cl -0.095 7.095 21 C -0.087 4.087 22 C -0.232 4.232 23 H 0.289 0.711 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.414 0.586 27 H 0.414 0.586 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.101 0.899 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 -16.777 5.401 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.069 3.931 10 C -0.190 4.190 11 C -0.133 4.133 12 C -0.065 4.065 13 N -0.306 5.306 14 C 0.393 3.607 15 O -0.506 6.506 16 N -0.385 5.385 17 C 0.050 3.950 18 C -0.171 4.171 19 C -0.127 4.127 20 Cl -0.066 7.066 21 C -0.108 4.108 22 C -0.252 4.252 23 H 0.099 0.901 24 H 0.129 0.871 25 H 0.142 0.858 26 H 0.251 0.749 27 H 0.251 0.749 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.119 0.881 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.835 -16.681 4.436 18.565 hybrid contribution 0.001 0.550 0.501 0.744 sum -6.834 -16.131 4.936 18.201 Atomic orbital electron populations 1.69894 1.08905 1.30500 1.35926 1.26759 0.95556 1.04478 0.91310 0.85129 0.79302 0.76102 0.78961 1.18347 1.19273 1.18543 1.19787 0.97939 0.92383 1.42394 0.90834 1.17988 0.92525 0.92785 0.89776 1.20903 0.99730 0.96982 1.01432 1.20458 0.99706 0.90854 1.02331 1.16978 0.96455 0.84794 1.08247 1.41869 1.58719 1.12657 1.17307 1.16162 0.79228 0.81218 0.84077 1.90913 1.55652 1.82999 1.21003 1.44824 1.66273 1.10348 1.17040 1.20040 1.01099 0.82889 0.90926 1.23041 0.96018 0.96354 1.01655 1.24674 0.96484 0.91080 1.00484 1.98389 1.82599 1.44053 1.81588 1.20352 0.94551 0.97129 0.98746 1.20782 1.04302 0.93107 1.07058 0.90086 0.87138 0.85808 0.74866 0.74931 0.91428 0.90660 0.84096 0.82107 0.88082 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.43 10.95 21.82 0.24 -43.19 16 2 C 0.03 1.70 5.15 85.24 0.44 2.14 16 3 Si 0.98 38.50 29.59 68.60 2.03 40.53 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.50 -27.35 9.04 23.39 0.21 -27.14 16 8 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 9 C 0.07 4.00 5.57 -21.28 -0.12 3.89 16 10 C -0.17 -8.92 8.63 22.48 0.19 -8.73 16 11 C -0.11 -5.08 9.90 22.14 0.22 -4.86 16 12 C 0.03 1.29 6.27 38.56 0.24 1.53 16 13 N -0.66 -21.71 5.31 -316.78 -1.68 -23.40 16 14 C 0.69 23.14 8.28 179.06 1.48 24.62 16 15 O -0.63 -27.43 14.07 -3.97 -0.06 -27.48 16 16 N -0.73 -15.50 5.55 -482.32 -2.68 -18.18 16 17 C 0.17 3.20 6.11 85.63 0.52 3.73 16 18 C -0.15 -1.84 9.36 25.49 0.24 -1.60 16 19 C -0.08 -0.97 10.43 67.62 0.71 -0.27 16 20 Cl -0.09 -1.27 29.10 -2.72 -0.08 -1.35 16 21 C -0.09 -4.30 8.57 22.13 0.19 -4.11 16 22 C -0.23 -12.33 9.74 22.48 0.22 -12.11 16 23 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 24 H 0.11 5.95 6.18 -2.91 -0.02 5.93 16 25 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 26 H 0.41 9.86 8.83 -92.71 -0.82 9.04 16 27 H 0.41 5.82 8.48 -92.70 -0.79 5.03 16 28 H 0.07 1.35 7.79 -2.39 -0.02 1.33 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 31 H 0.16 1.56 7.84 -2.91 -0.02 1.54 16 32 H 0.10 4.92 6.47 -2.91 -0.02 4.90 16 33 H 0.09 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -68.71 307.04 1.87 -66.84 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.44 Total: 29.16 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.55 Total: -22.92 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -4.12 Total: -84.77 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.06 Total: -27.48 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -68.71 1.87 -66.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.680 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds