Wall clock time and date at job start Tue Mar 31 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86795 * 119.99877 * 2 1 4 4 H 1.48504 * 109.47272 * 270.00315 * 3 2 1 5 5 H 1.48505 * 109.47361 * 30.00230 * 3 2 1 6 6 H 1.48500 * 109.47081 * 149.99919 * 3 2 1 7 7 C 1.39889 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99541 * 175.55600 * 7 2 1 9 9 C 1.41157 * 120.00505 * 355.56037 * 7 2 1 10 10 C 1.40869 * 120.16223 * 214.78539 * 9 7 2 11 11 C 1.36375 * 119.82548 * 180.02562 * 10 9 7 12 12 C 1.39473 * 120.16965 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.83623 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99646 * 35.29515 * 13 12 11 15 15 O 1.21578 * 120.00311 * 355.71466 * 14 13 12 16 16 N 1.34780 * 119.99940 * 175.71756 * 14 13 12 17 17 C 1.46492 * 120.00141 * 179.72533 * 16 14 13 18 18 C 1.50702 * 109.47328 * 180.27203 * 17 16 14 19 19 C 1.31157 * 120.00106 * 125.00226 * 18 17 16 20 20 Cl 1.73595 * 120.00023 * 359.97438 * 19 18 17 21 21 C 1.39485 * 120.33670 * 0.26036 * 12 11 10 22 22 C 1.36376 * 120.16172 * 359.43704 * 21 12 11 23 23 H 0.97003 * 120.00293 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.08609 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.91189 * 179.97438 * 11 10 9 26 26 H 0.97003 * 120.00085 * 215.30314 * 13 12 11 27 27 H 0.97001 * 119.99488 * 359.97438 * 16 14 13 28 28 H 1.09006 * 109.47360 * 300.27051 * 17 16 14 29 29 H 1.09001 * 109.47546 * 60.27195 * 17 16 14 30 30 H 1.08001 * 119.99909 * 304.99954 * 18 17 16 31 31 H 1.08006 * 119.99986 * 180.02562 * 19 18 17 32 32 H 1.07993 * 119.92076 * 179.70115 * 21 12 11 33 33 H 1.08004 * 120.08722 * 180.25113 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.7001 7 6 2.0082 -1.2115 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8650 -3.5178 0.7977 11 6 1.1804 -4.6941 0.8849 12 6 -0.0700 -4.8239 0.2808 13 7 -0.7626 -6.0283 0.3738 14 6 -0.6810 -6.7675 1.4977 15 8 0.0577 -6.4228 2.3997 16 7 -1.4183 -7.8889 1.6218 17 6 -1.3252 -8.6956 2.8410 18 6 -2.2379 -9.8892 2.7246 19 6 -1.7592 -11.0993 2.8881 20 17 -0.0740 -11.3261 3.2378 21 6 -0.6277 -3.7552 -0.4210 22 6 0.0422 -2.5708 -0.5116 23 1 -0.4851 0.8400 0.0004 24 1 2.8337 -3.4192 1.2649 25 1 1.6081 -5.5275 1.4224 26 1 -1.3037 -6.3353 -0.3705 27 1 -2.0080 -8.1637 0.9022 28 1 -0.2980 -9.0354 2.9743 29 1 -1.6228 -8.0930 3.6991 30 1 -3.2862 -9.7480 2.5067 31 1 -2.4133 -11.9546 2.8043 32 1 -1.5942 -3.8647 -0.8902 33 1 -0.3926 -1.7428 -1.0519 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475839154.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:08 Heat of formation + Delta-G solvation = 6.549756 kcal Electronic energy + Delta-G solvation = -18310.940624 eV Core-core repulsion = 15169.911887 eV Total energy + Delta-G solvation = -3141.028737 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89840 -37.64984 -37.10261 -35.43265 -34.29732 -33.04960 -32.29068 -29.52732 -28.79652 -26.38988 -24.51002 -21.63253 -20.85048 -20.68780 -19.90689 -17.92506 -17.20577 -17.05637 -16.17516 -15.34680 -15.02085 -14.72190 -14.43616 -13.89641 -13.73659 -13.21094 -12.79674 -12.61977 -12.37064 -12.11072 -12.05631 -11.65331 -11.30341 -11.12254 -10.99547 -10.86804 -10.67865 -10.08084 -9.69386 -9.46639 -9.40582 -9.16767 -8.90609 -8.79212 -7.48564 -6.78188 -6.56289 -4.28394 1.36535 1.98394 2.71504 3.11259 3.12505 3.13744 3.17771 3.23501 3.73654 4.02474 4.33496 4.66988 4.76163 4.86508 5.33015 5.45438 5.70259 5.78210 5.93086 6.23990 6.47348 6.57670 6.81733 6.86347 7.09954 7.20429 7.32138 7.45441 7.70812 7.91580 8.02108 8.14947 8.36541 8.50728 8.69460 8.97673 8.98811 9.13546 10.35024 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.049673 B = 0.002897 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.550916 B = 9664.197467 C = 9969.276198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.098 3.902 10 C -0.203 4.203 11 C -0.087 4.087 12 C 0.024 3.976 13 N -0.667 5.667 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.749 5.749 17 C 0.155 3.845 18 C -0.158 4.158 19 C -0.093 4.093 20 Cl -0.085 7.085 21 C -0.123 4.123 22 C -0.141 4.141 23 H 0.277 0.723 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.391 0.609 27 H 0.393 0.607 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -17.352 1.448 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.313 5.313 14 C 0.395 3.605 15 O -0.453 6.453 16 N -0.407 5.407 17 C 0.031 3.969 18 C -0.177 4.177 19 C -0.138 4.138 20 Cl -0.056 7.056 21 C -0.144 4.144 22 C -0.161 4.161 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.225 0.775 27 H 0.226 0.774 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.108 0.892 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.432 -16.877 2.351 18.214 hybrid contribution -0.394 0.424 -0.539 0.790 sum -6.826 -16.453 1.813 17.905 Atomic orbital electron populations 1.69768 1.07245 1.28563 1.38600 1.25860 0.94932 1.01088 0.92652 0.86211 0.80248 0.80600 0.78970 1.19591 1.20367 1.18768 1.19476 0.94680 0.90234 1.44898 0.90693 1.17713 0.92332 0.92015 0.88429 1.20813 1.01179 0.94939 1.05426 1.20430 0.92778 0.97949 0.99543 1.17081 0.93751 0.85004 1.11074 1.42099 1.51730 1.22146 1.15294 1.16001 0.81281 0.79979 0.83197 1.90916 1.42105 1.71411 1.40831 1.45006 1.48671 1.26519 1.20481 1.20326 0.99615 0.89234 0.87716 1.23301 1.00828 0.93634 0.99955 1.24605 0.86446 0.99200 1.03573 1.98391 1.17024 1.97149 1.93081 1.20288 0.98372 0.93052 1.02688 1.21173 0.97324 0.95443 1.02124 0.91252 0.88639 0.87330 0.77549 0.77419 0.89903 0.90339 0.84168 0.83068 0.89175 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.49 10.60 55.54 0.59 -20.90 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 3 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.53 9.02 -37.86 -0.34 -12.87 16 8 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -5.28 9.74 -39.26 -0.38 -5.66 16 11 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 12 C 0.02 0.53 6.31 -83.57 -0.53 0.01 16 13 N -0.67 -11.91 5.31 -14.10 -0.07 -11.98 16 14 C 0.69 12.55 8.39 -86.92 -0.73 11.82 16 15 O -0.58 -13.06 13.76 5.30 0.07 -12.99 16 16 N -0.75 -9.40 5.55 -66.42 -0.37 -9.77 16 17 C 0.16 1.77 5.97 -5.20 -0.03 1.74 16 18 C -0.16 -1.15 9.64 -36.07 -0.35 -1.50 16 19 C -0.09 -0.64 10.82 28.97 0.31 -0.33 16 20 Cl -0.08 -0.80 26.96 -51.86 -1.40 -2.20 16 21 C -0.12 -2.85 9.90 -39.79 -0.39 -3.24 16 22 C -0.14 -3.66 8.61 -39.26 -0.34 -4.00 16 23 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 24 H 0.10 2.36 8.06 -52.48 -0.42 1.93 16 25 H 0.11 2.68 6.22 -52.49 -0.33 2.35 16 26 H 0.39 5.37 8.83 -40.82 -0.36 5.01 16 27 H 0.39 3.55 8.48 -40.82 -0.35 3.20 16 28 H 0.08 1.08 6.01 -51.93 -0.31 0.77 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.13 3.52 6.13 -52.48 -0.32 3.20 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -31.91 303.24 -8.77 -40.68 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.33 Total: 11.07 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.81 Total: -12.76 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.14 Total: -42.66 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.40 Total: -2.20 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.91 -8.77 -40.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839154.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.226 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds