Wall clock time and date at job start Tue Mar 31 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86795 * 119.99877 * 2 1 4 4 H 1.48504 * 109.47272 * 270.00315 * 3 2 1 5 5 H 1.48505 * 109.47361 * 30.00230 * 3 2 1 6 6 H 1.48500 * 109.47081 * 149.99919 * 3 2 1 7 7 C 1.39889 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99541 * 175.55600 * 7 2 1 9 9 C 1.41157 * 120.00505 * 355.56037 * 7 2 1 10 10 C 1.40869 * 120.16223 * 214.78539 * 9 7 2 11 11 C 1.36375 * 119.82548 * 180.02562 * 10 9 7 12 12 C 1.39473 * 120.16965 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.83623 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99646 * 35.29515 * 13 12 11 15 15 O 1.21578 * 120.00311 * 355.71466 * 14 13 12 16 16 N 1.34780 * 119.99940 * 175.71756 * 14 13 12 17 17 C 1.46492 * 120.00141 * 179.72533 * 16 14 13 18 18 C 1.50702 * 109.47328 * 180.27203 * 17 16 14 19 19 C 1.31157 * 120.00106 * 125.00226 * 18 17 16 20 20 Cl 1.73595 * 120.00023 * 359.97438 * 19 18 17 21 21 C 1.39485 * 120.33670 * 0.26036 * 12 11 10 22 22 C 1.36376 * 120.16172 * 359.43704 * 21 12 11 23 23 H 0.97003 * 120.00293 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.08609 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.91189 * 179.97438 * 11 10 9 26 26 H 0.97003 * 120.00085 * 215.30314 * 13 12 11 27 27 H 0.97001 * 119.99488 * 359.97438 * 16 14 13 28 28 H 1.09006 * 109.47360 * 300.27051 * 17 16 14 29 29 H 1.09001 * 109.47546 * 60.27195 * 17 16 14 30 30 H 1.08001 * 119.99909 * 304.99954 * 18 17 16 31 31 H 1.08006 * 119.99986 * 180.02562 * 19 18 17 32 32 H 1.07993 * 119.92076 * 179.70115 * 21 12 11 33 33 H 1.08004 * 120.08722 * 180.25113 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.7001 7 6 2.0082 -1.2115 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8650 -3.5178 0.7977 11 6 1.1804 -4.6941 0.8849 12 6 -0.0700 -4.8239 0.2808 13 7 -0.7626 -6.0283 0.3738 14 6 -0.6810 -6.7675 1.4977 15 8 0.0577 -6.4228 2.3997 16 7 -1.4183 -7.8889 1.6218 17 6 -1.3252 -8.6956 2.8410 18 6 -2.2379 -9.8892 2.7246 19 6 -1.7592 -11.0993 2.8881 20 17 -0.0740 -11.3261 3.2378 21 6 -0.6277 -3.7552 -0.4210 22 6 0.0422 -2.5708 -0.5116 23 1 -0.4851 0.8400 0.0004 24 1 2.8337 -3.4192 1.2649 25 1 1.6081 -5.5275 1.4224 26 1 -1.3037 -6.3353 -0.3705 27 1 -2.0080 -8.1637 0.9022 28 1 -0.2980 -9.0354 2.9743 29 1 -1.6228 -8.0930 3.6991 30 1 -3.2862 -9.7480 2.5067 31 1 -2.4133 -11.9546 2.8043 32 1 -1.5942 -3.8647 -0.8902 33 1 -0.3926 -1.7428 -1.0519 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475839154.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:08 Heat of formation + Delta-G solvation = -14.368304 kcal Electronic energy + Delta-G solvation = -18311.847699 eV Core-core repulsion = 15169.911887 eV Total energy + Delta-G solvation = -3141.935812 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40394 -39.30348 -37.95787 -36.55125 -35.97212 -34.74186 -33.35983 -31.45273 -30.64056 -27.62088 -26.16904 -23.40209 -22.65609 -21.79241 -21.11189 -19.39849 -19.06931 -18.35421 -17.27818 -17.00803 -16.51065 -16.04920 -15.66235 -15.48058 -15.04301 -14.72428 -14.51100 -13.99474 -13.73116 -13.57364 -13.21156 -13.20629 -12.83469 -12.76900 -12.75540 -12.46589 -11.82935 -11.61346 -11.38890 -11.24150 -11.04626 -10.65564 -10.30971 -9.95399 -9.44071 -8.66913 -8.47858 -6.30187 0.73629 0.88381 1.16809 1.40549 1.40902 1.48369 1.55332 1.90486 2.21125 2.26578 2.83531 3.43647 3.70928 3.71227 4.22322 4.41623 4.53148 4.57298 4.72680 4.95319 5.08906 5.15528 5.16698 5.25067 5.34961 5.45462 5.48321 5.71675 5.84553 6.05472 6.13787 6.27792 6.42412 6.70791 6.99368 7.03512 7.17290 7.66032 8.44917 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.049673 B = 0.002897 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.550916 B = 9664.197467 C = 9969.276198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.066 3.934 10 C -0.220 4.220 11 C -0.099 4.099 12 C 0.041 3.959 13 N -0.657 5.657 14 C 0.691 3.309 15 O -0.625 6.625 16 N -0.723 5.723 17 C 0.150 3.850 18 C -0.155 4.155 19 C -0.083 4.083 20 Cl -0.114 7.114 21 C -0.119 4.119 22 C -0.158 4.158 23 H 0.284 0.716 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.415 0.585 27 H 0.415 0.585 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.127 0.873 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 -18.534 0.925 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.063 3.937 10 C -0.240 4.240 11 C -0.120 4.120 12 C -0.053 4.053 13 N -0.306 5.306 14 C 0.392 3.608 15 O -0.506 6.506 16 N -0.381 5.381 17 C 0.026 3.974 18 C -0.174 4.174 19 C -0.127 4.127 20 Cl -0.086 7.086 21 C -0.139 4.139 22 C -0.178 4.178 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.253 0.747 27 H 0.252 0.748 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.192 0.808 31 H 0.205 0.795 32 H 0.145 0.855 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.443 -18.138 1.790 20.087 hybrid contribution 0.118 0.594 -0.343 0.696 sum -8.325 -17.544 1.447 19.473 Atomic orbital electron populations 1.69827 1.08513 1.29880 1.38817 1.26717 0.95831 1.04231 0.91638 0.85112 0.78633 0.75883 0.79465 1.18355 1.19404 1.18828 1.19702 0.94773 0.91384 1.47133 0.91085 1.18020 0.93467 0.92627 0.89552 1.20921 1.01545 0.95533 1.05974 1.20522 0.93876 0.97426 1.00129 1.17097 0.92954 0.86511 1.08764 1.41854 1.51536 1.20727 1.16443 1.16213 0.81233 0.80929 0.82454 1.90893 1.44302 1.72901 1.42474 1.44774 1.47285 1.24473 1.21536 1.20393 0.99907 0.90422 0.86658 1.23277 1.01515 0.91699 1.00922 1.25122 0.85052 1.00359 1.02215 1.98398 1.19774 1.97221 1.93253 1.20533 0.99381 0.91887 1.02132 1.21170 0.97440 0.96417 1.02742 0.90522 0.88812 0.87675 0.74737 0.74846 0.91763 0.91607 0.80765 0.79474 0.85542 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.04 10.60 21.82 0.23 -44.81 16 2 C 0.03 1.43 5.42 85.23 0.46 1.89 16 3 Si 0.99 39.85 29.56 68.60 2.03 41.87 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.50 -28.01 9.02 23.39 0.21 -27.80 16 8 H 0.07 3.87 7.85 -2.91 -0.02 3.84 16 9 C 0.07 3.71 5.55 -21.28 -0.12 3.59 16 10 C -0.22 -11.83 9.74 22.48 0.22 -11.61 16 11 C -0.10 -4.98 8.61 22.13 0.19 -4.79 16 12 C 0.04 1.82 6.31 38.56 0.24 2.07 16 13 N -0.66 -22.14 5.31 -316.79 -1.68 -23.82 16 14 C 0.69 24.03 8.39 179.05 1.50 25.54 16 15 O -0.63 -28.46 13.76 -3.96 -0.05 -28.52 16 16 N -0.72 -16.42 5.55 -482.31 -2.68 -19.10 16 17 C 0.15 3.17 5.97 85.64 0.51 3.68 16 18 C -0.16 -1.73 9.64 25.49 0.25 -1.48 16 19 C -0.08 -0.87 10.82 67.62 0.73 -0.14 16 20 Cl -0.11 -2.04 26.96 -2.72 -0.07 -2.11 16 21 C -0.12 -5.37 9.90 22.14 0.22 -5.15 16 22 C -0.16 -8.33 8.61 22.48 0.19 -8.14 16 23 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 24 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 25 H 0.11 5.32 6.22 -2.91 -0.02 5.30 16 26 H 0.42 10.01 8.83 -92.71 -0.82 9.19 16 27 H 0.41 5.93 8.48 -92.71 -0.79 5.15 16 28 H 0.06 1.64 6.01 -2.38 -0.01 1.63 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 33 H 0.12 6.56 6.13 -2.91 -0.02 6.54 16 Total: -1.00 -72.26 303.24 1.94 -70.32 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.44 Total: 28.51 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.61 Total: -22.34 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -4.13 Total: -87.73 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.05 Total: -28.52 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.11 kcal Total: -72.26 1.94 -70.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839154.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.949 kcal (2) G-P(sol) polarization free energy of solvation -72.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds