Wall clock time and date at job start Tue Mar 31 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48497 * 109.47325 * 269.99774 * 3 2 1 5 5 H 1.48502 * 109.47028 * 29.99966 * 3 2 1 6 6 H 1.48501 * 109.46899 * 149.99716 * 3 2 1 7 7 C 1.39020 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99777 * 159.14115 * 7 2 1 9 9 N 1.36906 * 119.99853 * 339.14157 * 7 2 1 10 10 C 1.34771 * 120.00338 * 314.08438 * 9 7 2 11 11 O 1.21636 * 119.99665 * 4.17332 * 10 9 7 12 12 C 1.47321 * 120.00073 * 184.17904 * 10 9 7 13 13 C 1.39798 * 120.20627 * 313.71476 * 12 10 9 14 14 C 1.37837 * 119.91039 * 180.25544 * 13 12 10 15 15 Cl 1.73594 * 119.83820 * 180.02562 * 14 13 12 16 16 C 1.38712 * 120.32849 * 0.04753 * 14 13 12 17 17 C 1.37979 * 120.42441 * 359.95062 * 16 14 13 18 18 C 1.38927 * 120.08285 * 0.02941 * 17 16 14 19 19 N 1.38934 * 120.16607 * 180.02562 * 18 17 16 20 20 C 1.46502 * 119.99616 * 134.08377 * 9 7 2 21 21 C 1.53002 * 117.49979 * 3.11215 * 20 9 7 22 22 C 1.52994 * 117.50115 * 294.44783 * 20 9 7 23 23 H 0.97002 * 120.00229 * 5.05514 * 1 2 3 24 24 H 1.08003 * 120.04521 * 0.27599 * 13 12 10 25 25 H 1.07998 * 119.79249 * 179.97438 * 16 14 13 26 26 H 1.07995 * 119.96239 * 179.97438 * 17 16 14 27 27 H 0.96998 * 120.00298 * 183.89119 * 19 18 17 28 28 H 0.96999 * 119.99973 * 3.87839 * 19 18 17 29 29 H 1.09000 * 115.54832 * 148.77640 * 20 9 7 30 30 H 1.08998 * 117.49697 * 359.97438 * 21 20 9 31 31 H 1.09003 * 117.50003 * 145.02179 * 21 20 9 32 32 H 1.09001 * 117.49961 * 214.97938 * 22 20 9 33 33 H 1.08996 * 117.49832 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4452 2.6527 0.7000 6 1 3.5454 1.4402 0.7001 7 6 2.0090 -1.2039 0.0005 8 1 3.0359 -1.2347 -0.3325 9 7 1.3917 -2.3505 0.4232 10 6 0.6663 -2.3460 1.5590 11 8 0.4968 -1.3069 2.1681 12 6 0.0786 -3.5995 2.0628 13 6 -0.5994 -4.4580 1.1924 14 6 -1.1514 -5.6267 1.6714 15 17 -1.9924 -6.6918 0.5888 16 6 -1.0386 -5.9558 3.0142 17 6 -0.3723 -5.1185 3.8852 18 6 0.1910 -3.9364 3.4211 19 7 0.8627 -3.0922 4.2966 20 6 1.5199 -3.5825 -0.3592 21 6 2.4157 -3.5421 -1.5989 22 6 0.8940 -3.6011 -1.7552 23 1 -0.4850 0.8368 -0.0740 24 1 -0.6903 -4.2061 0.1462 25 1 -1.4748 -6.8735 3.3802 26 1 -0.2894 -5.3819 4.9293 27 1 1.2060 -2.2412 3.9823 28 1 0.9882 -3.3538 5.2222 29 1 1.4968 -4.5086 0.2151 30 1 2.9094 -2.5989 -1.8325 31 1 2.9816 -4.4419 -1.8404 32 1 0.4596 -4.5396 -2.0995 33 1 0.3873 -2.6967 -2.0916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544034136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:53 Heat of formation + Delta-G solvation = 24.168896 kcal Electronic energy + Delta-G solvation = -19991.608038 eV Core-core repulsion = 16851.343324 eV Total energy + Delta-G solvation = -3140.264714 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65317 -37.81999 -36.34058 -35.80927 -33.87216 -32.82091 -31.37277 -30.32396 -28.09149 -25.24590 -23.23715 -21.97116 -21.48245 -21.05304 -19.48560 -17.27431 -16.56895 -16.50099 -16.12680 -15.10680 -15.01670 -14.16734 -13.98034 -13.67375 -13.62722 -13.23300 -12.92541 -12.61491 -12.13131 -11.82028 -11.70206 -11.33641 -11.08808 -10.94389 -10.86177 -10.57852 -10.37645 -10.32949 -9.90522 -9.86063 -9.66013 -8.75955 -8.59652 -8.17514 -7.13925 -7.04859 -6.19430 -3.93559 1.52336 1.79095 2.58982 3.25162 3.35130 3.37370 3.80797 4.22230 4.28199 4.36150 4.76300 4.82647 5.13748 5.15604 5.33489 5.61777 5.67662 5.71880 5.87544 5.92197 6.01624 6.23854 6.33215 6.39778 6.48408 6.60435 6.69263 6.88345 7.02130 7.03886 7.56847 7.81290 8.16151 8.23610 8.97510 9.06411 9.56574 10.18991 10.88368 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.006842 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.036432 B = 4091.282075 C = 4933.498907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.355 4.355 8 H 0.082 0.918 9 N -0.410 5.410 10 C 0.524 3.476 11 O -0.538 6.538 12 C -0.168 4.168 13 C -0.037 4.037 14 C -0.104 4.104 15 Cl -0.092 7.092 16 C -0.059 4.059 17 C -0.204 4.204 18 C 0.259 3.741 19 N -0.859 5.859 20 C 0.066 3.934 21 C -0.179 4.179 22 C -0.197 4.197 23 H 0.266 0.734 24 H 0.140 0.860 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.414 0.586 28 H 0.392 0.608 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -10.915 3.560 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.481 4.481 8 H 0.099 0.901 9 N -0.128 5.128 10 C 0.313 3.687 11 O -0.418 6.418 12 C -0.176 4.176 13 C -0.057 4.057 14 C -0.133 4.133 15 Cl -0.064 7.064 16 C -0.079 4.079 17 C -0.227 4.227 18 C 0.149 3.851 19 N -0.398 5.398 20 C -0.040 4.040 21 C -0.217 4.217 22 C -0.236 4.236 23 H 0.076 0.924 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.248 0.752 28 H 0.219 0.781 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.128 -10.292 3.823 10.980 hybrid contribution 0.278 0.829 -0.039 0.875 sum 0.150 -9.463 3.784 10.193 Atomic orbital electron populations 1.69833 1.06686 1.27685 1.41274 1.25306 0.94737 0.99505 0.93876 0.86225 0.79894 0.82291 0.77735 1.20818 1.20939 1.19506 1.18907 0.95945 0.84233 1.49064 0.90064 1.42655 1.45762 1.07010 1.17402 1.17517 0.83026 0.86548 0.81657 1.90597 1.60545 1.32198 1.58463 1.19911 1.06754 0.98963 0.92013 1.21222 0.93353 0.90697 1.00402 1.20407 1.06516 0.95224 0.91146 1.98311 1.77483 1.65547 1.65054 1.20669 0.97304 0.98929 0.90989 1.20358 1.06744 0.95906 0.99737 1.17737 0.89108 0.89394 0.88841 1.42662 1.62561 1.23210 1.11357 1.21906 1.04269 0.90882 0.86974 1.23115 0.93351 1.02754 1.02494 1.23285 0.95701 1.02441 1.02133 0.92398 0.84234 0.85630 0.85623 0.75179 0.78050 0.87516 0.87686 0.89912 0.89918 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.79 11.96 55.50 0.66 -23.13 16 2 C 0.08 2.13 4.29 -17.45 -0.07 2.05 16 3 Si 0.91 21.34 29.61 -169.99 -5.03 16.31 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.35 -9.41 7.99 -15.00 -0.12 -9.53 16 8 H 0.08 2.08 7.09 -52.49 -0.37 1.71 16 9 N -0.41 -10.07 2.81 -108.97 -0.31 -10.38 16 10 C 0.52 13.08 6.21 -12.57 -0.08 13.01 16 11 O -0.54 -15.15 13.07 5.25 0.07 -15.08 16 12 C -0.17 -3.47 5.11 -104.81 -0.54 -4.01 16 13 C -0.04 -0.69 7.41 -39.15 -0.29 -0.98 16 14 C -0.10 -1.68 6.31 -39.55 -0.25 -1.93 16 15 Cl -0.09 -1.34 28.94 -51.86 -1.50 -2.84 16 16 C -0.06 -0.84 9.81 -39.50 -0.39 -1.23 16 17 C -0.20 -2.96 9.88 -39.42 -0.39 -3.35 16 18 C 0.26 4.59 6.74 -83.57 -0.56 4.02 16 19 N -0.86 -13.87 8.93 32.56 0.29 -13.58 16 20 C 0.07 1.33 4.45 -67.93 -0.30 1.03 16 21 C -0.18 -3.25 9.81 -26.69 -0.26 -3.51 16 22 C -0.20 -3.69 9.51 -26.69 -0.25 -3.95 16 23 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16 24 H 0.14 2.74 5.97 -52.48 -0.31 2.42 16 25 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.41 7.81 6.51 -40.82 -0.27 7.54 16 28 H 0.39 4.73 8.84 -40.82 -0.36 4.37 16 29 H 0.11 2.01 6.30 -51.93 -0.33 1.68 16 30 H 0.10 2.06 6.61 -51.93 -0.34 1.72 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.10 2.18 8.14 -51.93 -0.42 1.75 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -30.69 294.34 -8.12 -38.81 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -3.23 Total: 13.82 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -3.51 Total: -8.37 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.65 Total: -47.08 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.07 Total: -15.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.50 Total: -2.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.69 -8.12 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544034136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.981 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds