Wall clock time and date at job start Tue Mar 31 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48497 * 109.47325 * 269.99774 * 3 2 1 5 5 H 1.48502 * 109.47028 * 29.99966 * 3 2 1 6 6 H 1.48501 * 109.46899 * 149.99716 * 3 2 1 7 7 C 1.39020 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99777 * 159.14115 * 7 2 1 9 9 N 1.36906 * 119.99853 * 339.14157 * 7 2 1 10 10 C 1.34771 * 120.00338 * 314.08438 * 9 7 2 11 11 O 1.21636 * 119.99665 * 4.17332 * 10 9 7 12 12 C 1.47321 * 120.00073 * 184.17904 * 10 9 7 13 13 C 1.39798 * 120.20627 * 313.71476 * 12 10 9 14 14 C 1.37837 * 119.91039 * 180.25544 * 13 12 10 15 15 Cl 1.73594 * 119.83820 * 180.02562 * 14 13 12 16 16 C 1.38712 * 120.32849 * 0.04753 * 14 13 12 17 17 C 1.37979 * 120.42441 * 359.95062 * 16 14 13 18 18 C 1.38927 * 120.08285 * 0.02941 * 17 16 14 19 19 N 1.38934 * 120.16607 * 180.02562 * 18 17 16 20 20 C 1.46502 * 119.99616 * 134.08377 * 9 7 2 21 21 C 1.53002 * 117.49979 * 3.11215 * 20 9 7 22 22 C 1.52994 * 117.50115 * 294.44783 * 20 9 7 23 23 H 0.97002 * 120.00229 * 5.05514 * 1 2 3 24 24 H 1.08003 * 120.04521 * 0.27599 * 13 12 10 25 25 H 1.07998 * 119.79249 * 179.97438 * 16 14 13 26 26 H 1.07995 * 119.96239 * 179.97438 * 17 16 14 27 27 H 0.96998 * 120.00298 * 183.89119 * 19 18 17 28 28 H 0.96999 * 119.99973 * 3.87839 * 19 18 17 29 29 H 1.09000 * 115.54832 * 148.77640 * 20 9 7 30 30 H 1.08998 * 117.49697 * 359.97438 * 21 20 9 31 31 H 1.09003 * 117.50003 * 145.02179 * 21 20 9 32 32 H 1.09001 * 117.49961 * 214.97938 * 22 20 9 33 33 H 1.08996 * 117.49832 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4452 2.6527 0.7000 6 1 3.5454 1.4402 0.7001 7 6 2.0090 -1.2039 0.0005 8 1 3.0359 -1.2347 -0.3325 9 7 1.3917 -2.3505 0.4232 10 6 0.6663 -2.3460 1.5590 11 8 0.4968 -1.3069 2.1681 12 6 0.0786 -3.5995 2.0628 13 6 -0.5994 -4.4580 1.1924 14 6 -1.1514 -5.6267 1.6714 15 17 -1.9924 -6.6918 0.5888 16 6 -1.0386 -5.9558 3.0142 17 6 -0.3723 -5.1185 3.8852 18 6 0.1910 -3.9364 3.4211 19 7 0.8627 -3.0922 4.2966 20 6 1.5199 -3.5825 -0.3592 21 6 2.4157 -3.5421 -1.5989 22 6 0.8940 -3.6011 -1.7552 23 1 -0.4850 0.8368 -0.0740 24 1 -0.6903 -4.2061 0.1462 25 1 -1.4748 -6.8735 3.3802 26 1 -0.2894 -5.3819 4.9293 27 1 1.2060 -2.2412 3.9823 28 1 0.9882 -3.3538 5.2222 29 1 1.4968 -4.5086 0.2151 30 1 2.9094 -2.5989 -1.8325 31 1 2.9816 -4.4419 -1.8404 32 1 0.4596 -4.5396 -2.0995 33 1 0.3873 -2.6967 -2.0916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544034136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:53 Heat of formation + Delta-G solvation = 4.637788 kcal Electronic energy + Delta-G solvation = -19992.454970 eV Core-core repulsion = 16851.343324 eV Total energy + Delta-G solvation = -3141.111646 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18137 -39.36002 -37.84948 -37.22986 -35.17884 -34.73746 -33.09175 -31.87676 -29.41223 -27.13423 -24.71155 -23.46211 -22.91889 -22.63633 -21.17956 -18.89786 -17.94799 -17.90272 -17.76865 -16.96318 -16.51465 -15.87038 -15.43443 -15.19764 -15.02848 -14.77012 -14.39946 -14.25702 -13.78663 -13.29924 -12.99216 -12.94669 -12.80774 -12.68070 -12.49247 -12.20915 -12.04676 -11.78412 -11.52402 -11.29280 -11.03916 -10.71907 -10.18948 -9.81329 -8.98146 -8.41502 -8.22906 -6.00337 0.20079 0.49726 1.34569 1.37497 1.43007 1.50770 2.21046 2.37607 2.84498 3.02473 3.04702 3.12892 3.35707 3.88381 3.98214 4.14248 4.21724 4.36058 4.39664 4.49741 4.63901 4.88604 4.92677 5.04386 5.16333 5.25476 5.32529 5.38817 5.45743 5.51895 5.75549 6.20477 6.47161 6.93800 7.03291 7.15834 7.65307 8.30214 8.84802 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.006842 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.036432 B = 4091.282075 C = 4933.498907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.030 3.970 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.365 4.365 8 H 0.083 0.917 9 N -0.427 5.427 10 C 0.517 3.483 11 O -0.585 6.585 12 C -0.206 4.206 13 C -0.042 4.042 14 C -0.108 4.108 15 Cl -0.076 7.076 16 C -0.043 4.043 17 C -0.188 4.188 18 C 0.250 3.750 19 N -0.855 5.855 20 C 0.048 3.952 21 C -0.162 4.162 22 C -0.188 4.188 23 H 0.260 0.740 24 H 0.123 0.877 25 H 0.165 0.835 26 H 0.167 0.833 27 H 0.401 0.599 28 H 0.411 0.589 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 -13.725 4.448 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.100 0.900 9 N -0.145 5.145 10 C 0.308 3.692 11 O -0.468 6.468 12 C -0.215 4.215 13 C -0.062 4.062 14 C -0.137 4.137 15 Cl -0.048 7.048 16 C -0.062 4.062 17 C -0.211 4.211 18 C 0.139 3.861 19 N -0.394 5.394 20 C -0.056 4.056 21 C -0.200 4.200 22 C -0.227 4.227 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.183 0.817 26 H 0.185 0.815 27 H 0.232 0.768 28 H 0.242 0.758 29 H 0.141 0.859 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.158 -13.149 4.703 13.966 hybrid contribution 0.169 1.535 -0.270 1.568 sum 0.327 -11.613 4.433 12.435 Atomic orbital electron populations 1.69960 1.08199 1.27744 1.44004 1.26096 0.95337 1.02628 0.93719 0.85315 0.78508 0.78343 0.78314 1.19114 1.21991 1.18966 1.19148 0.96138 0.85442 1.48443 0.89954 1.42854 1.45648 1.07809 1.18184 1.18199 0.82157 0.87598 0.81276 1.90537 1.62152 1.34343 1.59774 1.19633 1.09712 0.98228 0.93930 1.21032 0.94103 0.91680 0.99432 1.20479 1.06219 0.94596 0.92369 1.98318 1.77009 1.64619 1.64815 1.21140 0.95507 0.99734 0.89808 1.20787 1.04656 0.93912 1.01722 1.18011 0.89504 0.90680 0.87906 1.42629 1.62086 1.22381 1.12290 1.22072 1.06368 0.89802 0.87403 1.23186 0.92998 1.03592 1.00216 1.23186 0.96324 1.02274 1.00899 0.93092 0.85960 0.81741 0.81531 0.76846 0.75808 0.85868 0.89648 0.85877 0.86624 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.61 11.96 21.68 0.26 -52.35 16 2 C 0.03 1.68 4.29 84.95 0.36 2.04 16 3 Si 0.97 45.34 29.61 68.60 2.03 47.38 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.36 -20.02 7.99 84.09 0.67 -19.34 16 8 H 0.08 4.35 7.09 -2.91 -0.02 4.33 16 9 N -0.43 -21.68 2.81 -616.93 -1.73 -23.42 16 10 C 0.52 26.80 6.21 86.63 0.54 27.34 16 11 O -0.58 -34.55 13.07 -4.14 -0.05 -34.61 16 12 C -0.21 -8.59 5.11 -19.98 -0.10 -8.69 16 13 C -0.04 -1.57 7.41 22.55 0.17 -1.40 16 14 C -0.11 -3.20 6.31 22.29 0.14 -3.06 16 15 Cl -0.08 -1.99 28.94 -2.72 -0.08 -2.07 16 16 C -0.04 -1.02 9.81 22.32 0.22 -0.81 16 17 C -0.19 -4.69 9.88 22.37 0.22 -4.47 16 18 C 0.25 8.48 6.74 38.71 0.26 8.74 16 19 N -0.86 -26.99 8.93 -50.89 -0.45 -27.45 16 20 C 0.05 1.97 4.45 44.99 0.20 2.17 16 21 C -0.16 -5.71 9.81 30.62 0.30 -5.41 16 22 C -0.19 -7.04 9.51 30.62 0.29 -6.75 16 23 H 0.26 15.27 8.32 -92.71 -0.77 14.50 16 24 H 0.12 4.86 5.97 -2.91 -0.02 4.84 16 25 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 26 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 27 H 0.40 15.47 6.51 -92.71 -0.60 14.87 16 28 H 0.41 9.16 8.84 -92.71 -0.82 8.34 16 29 H 0.12 4.55 6.30 -2.39 -0.02 4.53 16 30 H 0.09 3.36 6.61 -2.39 -0.02 3.34 16 31 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -70.77 294.34 2.99 -67.78 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.25 Total: 34.37 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 3.27 Total: -9.64 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -1.93 Total: -103.22 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.05 Total: -34.61 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.07 kcal Total: -70.77 2.99 -67.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544034136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.417 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds