Wall clock time and date at job start Tue Mar 31 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99958 * 2 1 4 4 C 1.53006 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47189 * 63.68882 * 4 3 2 6 6 C 1.36730 * 119.99775 * 89.85768 * 5 4 3 7 7 H 1.08007 * 120.00277 * 230.66265 * 6 5 4 8 8 C 1.39118 * 120.00397 * 50.66522 * 6 5 4 9 9 N 1.31329 * 120.00155 * 202.12340 * 8 6 5 10 10 Si 1.86794 * 119.99716 * 22.11698 * 8 6 5 11 11 H 1.48503 * 109.47161 * 93.25721 * 10 8 6 12 12 H 1.48495 * 109.47393 * 213.25779 * 10 8 6 13 13 H 1.48500 * 109.47591 * 333.26161 * 10 8 6 14 14 C 1.34772 * 120.00299 * 269.85739 * 5 4 3 15 15 O 1.21721 * 119.99963 * 355.78757 * 14 5 4 16 16 C 1.46756 * 120.00372 * 175.79264 * 14 5 4 17 17 C 1.36814 * 125.16183 * 186.25982 * 16 14 5 18 18 C 1.36672 * 114.73617 * 179.97438 * 17 16 14 19 19 C 1.36810 * 114.74126 * 359.97438 * 18 17 16 20 20 C 1.43198 * 125.15815 * 180.02562 * 19 18 17 21 21 N 8.87187 * 119.46455 * 251.73861 * 2 1 3 22 22 S 1.75833 * 109.67928 * 359.75669 * 19 18 17 23 23 H 1.08999 * 109.47086 * 299.99935 * 1 2 3 24 24 H 1.08998 * 109.47070 * 60.00409 * 1 2 3 25 25 H 1.09003 * 109.46612 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47434 * 59.99970 * 3 2 1 27 27 H 1.09003 * 109.47054 * 299.99599 * 3 2 1 28 28 H 1.09001 * 109.46660 * 303.69063 * 4 3 2 29 29 H 1.09003 * 109.46955 * 183.69463 * 4 3 2 30 30 H 0.96993 * 119.99766 * 179.97438 * 9 8 6 31 31 H 1.07998 * 122.62813 * 359.95960 * 17 16 14 32 32 H 1.08006 * 122.62558 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9735 0.5361 -1.2390 6 6 4.2587 1.2914 -2.3425 7 1 3.8160 1.0433 -3.2959 8 6 5.1190 2.3796 -2.2373 9 7 5.0697 3.3442 -3.1272 10 14 6.3442 2.4688 -0.8301 11 1 7.6408 1.8902 -1.2652 12 1 6.5424 3.8866 -0.4354 13 1 5.8235 1.7004 0.3291 14 6 4.0954 -0.8051 -1.2907 15 8 3.9161 -1.4716 -0.2881 16 6 4.4444 -1.4621 -2.5557 17 6 4.4768 -2.8148 -2.7583 18 6 4.8302 -3.1954 -4.0225 19 6 5.0933 -2.1617 -4.8792 20 6 5.4809 -2.3053 -6.2502 21 7 5.7930 -2.4205 -7.3354 22 16 4.8758 -0.6301 -4.0435 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8530 0.5875 0.8542 29 1 3.9787 2.1783 0.0656 30 1 5.6693 4.1030 -3.0536 31 1 4.2418 -3.5259 -1.9802 32 1 4.8965 -4.2311 -4.3217 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556908195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:21 Heat of formation + Delta-G solvation = -6.887669 kcal Electronic energy + Delta-G solvation = -19486.912795 eV Core-core repulsion = 16347.345074 eV Total energy + Delta-G solvation = -3139.567721 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.11906 -37.44117 -36.94207 -35.76911 -34.95583 -32.47114 -30.35094 -28.85791 -26.07515 -25.52381 -24.60005 -22.52840 -20.14731 -19.97367 -18.60947 -16.78142 -16.28639 -16.07232 -15.66549 -15.22708 -14.79696 -14.59258 -14.20267 -14.03556 -13.58178 -13.44698 -12.86748 -12.82125 -12.44153 -12.34482 -12.18050 -11.99496 -11.59143 -11.43949 -11.31097 -11.20354 -10.91690 -10.58007 -10.19352 -9.91434 -9.37992 -9.20660 -8.88778 -8.15712 -7.99497 -7.77312 -6.91339 -4.63033 0.77697 1.97496 2.57227 2.66691 2.92300 3.04376 3.10048 3.35240 3.72931 3.83228 4.05767 4.11702 4.32041 4.44128 4.62517 5.49567 5.58863 5.63542 5.78152 5.79851 5.82434 5.91503 5.91983 5.95378 6.14684 6.39503 6.47252 6.69724 6.84493 7.06273 7.63439 7.69804 7.82770 7.84040 8.54647 9.01206 9.43902 10.13247 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.007945 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.468265 B = 3523.440128 C = 4632.559190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.049 3.951 4 C 0.118 3.882 5 N -0.459 5.459 6 C -0.357 4.357 7 H 0.111 0.889 8 C 0.089 3.911 9 N -0.821 5.821 10 Si 0.864 3.136 11 H -0.266 1.266 12 H -0.276 1.276 13 H -0.247 1.247 14 C 0.555 3.445 15 O -0.562 6.562 16 C -0.196 4.196 17 C -0.110 4.110 18 C -0.082 4.082 19 C -0.248 4.248 20 C 0.298 3.702 21 N -0.445 5.445 22 S 0.349 5.651 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.285 0.715 31 H 0.146 0.854 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 -2.189 4.097 5.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.181 5.181 6 C -0.492 4.492 7 H 0.127 0.873 8 C -0.127 4.127 9 N -0.451 5.451 10 Si 0.688 3.312 11 H -0.191 1.191 12 H -0.201 1.201 13 H -0.170 1.170 14 C 0.344 3.656 15 O -0.445 6.445 16 C -0.320 4.320 17 C -0.142 4.142 18 C -0.118 4.118 19 C -0.368 4.368 20 C -0.016 4.016 21 N -0.124 5.124 22 S 0.626 5.374 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.736 -1.157 2.328 3.774 hybrid contribution 0.117 -0.893 1.266 1.554 sum -2.619 -2.050 3.594 4.897 Atomic orbital electron populations 1.22650 0.82625 1.01993 0.99132 1.88096 1.18139 1.27433 1.95180 1.22988 0.95102 0.84963 0.99853 1.21708 0.91553 0.98168 0.89109 1.43285 1.59177 1.04229 1.11405 1.18833 1.29909 1.11696 0.88740 0.87289 1.25606 0.95767 0.94057 0.97255 1.69742 1.33866 1.06367 1.35128 0.87046 0.82371 0.78594 0.83229 1.19120 1.20078 1.17045 1.17300 0.79543 0.82663 0.86089 1.90708 1.54381 1.64510 1.34950 1.25007 1.10312 0.97523 0.99167 1.20192 1.02801 0.94266 0.96978 1.20135 1.00815 0.98566 0.92267 1.22528 1.16166 1.06846 0.91261 1.24606 0.92538 0.92937 0.91506 1.81146 1.10897 1.08665 1.11704 1.86292 1.56455 0.97125 0.97516 0.94934 0.94594 0.90289 0.93699 0.92423 0.90178 0.89977 0.90461 0.83606 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.98 9.64 -37.15 -0.36 -7.34 16 3 C 0.05 0.85 6.29 37.16 0.23 1.09 16 4 C 0.12 2.31 4.09 -4.04 -0.02 2.30 16 5 N -0.46 -9.98 1.85 -116.27 -0.22 -10.20 16 6 C -0.36 -7.97 7.18 -15.04 -0.11 -8.08 16 7 H 0.11 2.54 5.53 -31.14 -0.17 2.37 16 8 C 0.09 1.99 5.22 -17.44 -0.09 1.89 16 9 N -0.82 -19.22 13.95 55.50 0.77 -18.44 16 10 Si 0.86 17.47 26.53 -169.99 -4.51 12.96 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.25 -4.90 5.58 56.52 0.32 -4.59 16 14 C 0.55 12.34 7.14 -12.82 -0.09 12.25 16 15 O -0.56 -13.52 15.83 3.25 0.05 -13.47 16 16 C -0.20 -3.89 6.31 -36.66 -0.23 -4.12 16 17 C -0.11 -1.89 9.89 -40.66 -0.40 -2.29 16 18 C -0.08 -1.26 10.10 -40.66 -0.41 -1.67 16 19 C -0.25 -4.20 6.31 -38.17 -0.24 -4.44 16 20 C 0.30 5.22 15.80 -22.51 -0.36 4.86 16 21 N -0.45 -8.29 18.53 41.80 0.77 -7.52 16 22 S 0.35 6.53 18.49 -107.50 -1.99 4.54 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.61 7.36 -51.93 -0.38 1.23 16 29 H 0.08 1.53 5.09 -51.93 -0.26 1.26 16 30 H 0.28 6.21 8.31 -40.82 -0.34 5.87 16 31 H 0.15 2.36 8.04 -52.49 -0.42 1.93 16 32 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 297.06 15.07 4.48 4.48 Total: -1.00 -26.40 297.06 -4.59 -31.00 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.00 Total: 0.62 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.60 Total: 3.36 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 1.33 Total: -36.15 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.31 Total: -20.81 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -4.51 Total: 12.96 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.99 Total: 4.54 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.40 -4.59 -31.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556908195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.111 kcal (2) G-P(sol) polarization free energy of solvation -26.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds