Wall clock time and date at job start Tue Mar 31 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99958 * 2 1 4 4 C 1.53006 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47189 * 63.68882 * 4 3 2 6 6 C 1.36730 * 119.99775 * 89.85768 * 5 4 3 7 7 H 1.08007 * 120.00277 * 230.66265 * 6 5 4 8 8 C 1.39118 * 120.00397 * 50.66522 * 6 5 4 9 9 N 1.31329 * 120.00155 * 202.12340 * 8 6 5 10 10 Si 1.86794 * 119.99716 * 22.11698 * 8 6 5 11 11 H 1.48503 * 109.47161 * 93.25721 * 10 8 6 12 12 H 1.48495 * 109.47393 * 213.25779 * 10 8 6 13 13 H 1.48500 * 109.47591 * 333.26161 * 10 8 6 14 14 C 1.34772 * 120.00299 * 269.85739 * 5 4 3 15 15 O 1.21721 * 119.99963 * 355.78757 * 14 5 4 16 16 C 1.46756 * 120.00372 * 175.79264 * 14 5 4 17 17 C 1.36814 * 125.16183 * 186.25982 * 16 14 5 18 18 C 1.36672 * 114.73617 * 179.97438 * 17 16 14 19 19 C 1.36810 * 114.74126 * 359.97438 * 18 17 16 20 20 C 1.43198 * 125.15815 * 180.02562 * 19 18 17 21 21 N 8.87187 * 119.46455 * 251.73861 * 2 1 3 22 22 S 1.75833 * 109.67928 * 359.75669 * 19 18 17 23 23 H 1.08999 * 109.47086 * 299.99935 * 1 2 3 24 24 H 1.08998 * 109.47070 * 60.00409 * 1 2 3 25 25 H 1.09003 * 109.46612 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47434 * 59.99970 * 3 2 1 27 27 H 1.09003 * 109.47054 * 299.99599 * 3 2 1 28 28 H 1.09001 * 109.46660 * 303.69063 * 4 3 2 29 29 H 1.09003 * 109.46955 * 183.69463 * 4 3 2 30 30 H 0.96993 * 119.99766 * 179.97438 * 9 8 6 31 31 H 1.07998 * 122.62813 * 359.95960 * 17 16 14 32 32 H 1.08006 * 122.62558 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9735 0.5361 -1.2390 6 6 4.2587 1.2914 -2.3425 7 1 3.8160 1.0433 -3.2959 8 6 5.1190 2.3796 -2.2373 9 7 5.0697 3.3442 -3.1272 10 14 6.3442 2.4688 -0.8301 11 1 7.6408 1.8902 -1.2652 12 1 6.5424 3.8866 -0.4354 13 1 5.8235 1.7004 0.3291 14 6 4.0954 -0.8051 -1.2907 15 8 3.9161 -1.4716 -0.2881 16 6 4.4444 -1.4621 -2.5557 17 6 4.4768 -2.8148 -2.7583 18 6 4.8302 -3.1954 -4.0225 19 6 5.0933 -2.1617 -4.8792 20 6 5.4809 -2.3053 -6.2502 21 7 5.7930 -2.4205 -7.3354 22 16 4.8758 -0.6301 -4.0435 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8530 0.5875 0.8542 29 1 3.9787 2.1783 0.0656 30 1 5.6693 4.1030 -3.0536 31 1 4.2418 -3.5259 -1.9802 32 1 4.8965 -4.2311 -4.3217 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556908195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:21 Heat of formation + Delta-G solvation = -22.112597 kcal Electronic energy + Delta-G solvation = -19487.572997 eV Core-core repulsion = 16347.345074 eV Total energy + Delta-G solvation = -3140.227923 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74241 -38.84046 -38.35313 -37.22692 -36.62099 -34.16190 -31.83712 -30.29466 -27.34621 -27.10980 -26.09257 -23.96864 -21.69419 -21.43101 -20.21346 -18.38248 -17.77013 -17.60594 -17.06505 -16.63128 -16.29856 -16.06527 -15.74391 -15.50000 -15.03606 -14.89937 -14.50643 -14.29887 -13.96652 -13.70859 -13.67418 -13.37755 -13.09773 -12.88074 -12.80584 -12.64836 -12.44356 -11.93912 -11.76646 -11.44743 -11.00570 -10.66007 -10.45512 -9.71214 -9.48043 -9.33023 -8.61934 -6.36467 -0.66900 0.50362 1.10186 1.24573 1.31743 1.41808 1.47328 1.94553 2.17822 2.28359 2.46773 2.54637 2.93123 3.00935 3.05144 4.13994 4.25378 4.33139 4.44237 4.50100 4.57351 4.59472 4.60691 4.67399 4.86859 4.97862 5.05272 5.26558 5.42714 5.50649 5.96641 6.16290 6.40066 6.40939 6.83976 7.32264 7.76173 8.45576 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.007945 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.468265 B = 3523.440128 C = 4632.559190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.054 3.946 4 C 0.110 3.890 5 N -0.464 5.464 6 C -0.359 4.359 7 H 0.098 0.902 8 C 0.067 3.933 9 N -0.854 5.854 10 Si 0.900 3.100 11 H -0.274 1.274 12 H -0.266 1.266 13 H -0.244 1.244 14 C 0.548 3.452 15 O -0.588 6.588 16 C -0.225 4.225 17 C -0.093 4.093 18 C -0.061 4.061 19 C -0.236 4.236 20 C 0.311 3.689 21 N -0.461 5.461 22 S 0.324 5.676 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.289 0.711 31 H 0.160 0.840 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -3.387 4.355 6.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.185 5.185 6 C -0.493 4.493 7 H 0.114 0.886 8 C -0.146 4.146 9 N -0.486 5.486 10 Si 0.723 3.277 11 H -0.200 1.200 12 H -0.190 1.190 13 H -0.168 1.168 14 C 0.338 3.662 15 O -0.474 6.474 16 C -0.348 4.348 17 C -0.126 4.126 18 C -0.097 4.097 19 C -0.356 4.356 20 C -0.003 4.003 21 N -0.140 5.140 22 S 0.600 5.400 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.178 0.822 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.982 -2.305 2.602 4.580 hybrid contribution 0.137 -0.685 1.112 1.313 sum -2.845 -2.990 3.715 5.553 Atomic orbital electron populations 1.22847 0.80367 1.03144 1.00449 1.88040 1.20726 1.28095 1.95450 1.22909 0.93563 0.84922 1.00914 1.21843 0.93375 0.98053 0.88006 1.43399 1.59084 1.04270 1.11754 1.18751 1.29974 1.11737 0.88837 0.88587 1.25928 0.96435 0.93771 0.98461 1.69770 1.35020 1.07142 1.36647 0.86495 0.80543 0.78971 0.81717 1.20020 1.19041 1.16762 1.17625 0.79108 0.82809 0.86657 1.90673 1.55727 1.64951 1.36023 1.24960 1.12527 0.98588 0.98747 1.20474 1.00847 0.93371 0.97903 1.20454 0.98332 1.00088 0.90815 1.22304 1.16193 1.05985 0.91137 1.24517 0.92037 0.92444 0.91304 1.81173 1.11469 1.09181 1.12156 1.86334 1.57613 0.98240 0.97835 0.92643 0.94160 0.89315 0.90486 0.93327 0.91014 0.89378 0.90082 0.82226 0.80948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -14.93 9.64 -147.15 -1.42 -16.35 16 3 C 0.05 1.86 6.29 71.98 0.45 2.31 16 4 C 0.11 4.29 4.09 86.38 0.35 4.64 16 5 N -0.46 -20.24 1.85 -639.99 -1.19 -21.42 16 6 C -0.36 -16.23 7.18 84.14 0.60 -15.63 16 7 H 0.10 4.58 5.53 -16.48 -0.09 4.49 16 8 C 0.07 3.00 5.22 84.98 0.44 3.44 16 9 N -0.85 -40.43 13.95 21.69 0.30 -40.13 16 10 Si 0.90 35.72 26.53 68.60 1.82 37.54 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 13 H -0.24 -9.49 5.58 99.48 0.56 -8.94 16 14 C 0.55 24.33 7.14 86.47 0.62 24.94 16 15 O -0.59 -28.22 15.83 -2.58 -0.04 -28.26 16 16 C -0.23 -8.73 6.31 24.16 0.15 -8.58 16 17 C -0.09 -2.96 9.89 21.57 0.21 -2.74 16 18 C -0.06 -1.68 10.10 21.57 0.22 -1.46 16 19 C -0.24 -7.43 6.31 23.18 0.15 -7.29 16 20 C 0.31 10.18 15.80 88.34 1.40 11.58 16 21 N -0.46 -16.26 18.53 18.99 0.35 -15.91 16 22 S 0.32 11.96 18.49 -56.49 -1.04 10.92 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 2.89 7.36 -2.39 -0.02 2.87 16 29 H 0.09 3.24 5.09 -2.39 -0.01 3.23 16 30 H 0.29 12.70 8.31 -92.71 -0.77 11.93 16 31 H 0.16 4.70 8.04 -2.91 -0.02 4.68 16 32 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -56.00 297.06 5.56 -50.43 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.93 Total: 9.96 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.85 Total: 13.23 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -0.53 Total: -77.46 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.46 Total: -44.61 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 1.82 Total: 37.54 kcal Atomic # 16 Polarization: 11.96 SS G_CDS: -1.04 Total: 10.92 kcal Total: -56.00 5.56 -50.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556908195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.322 kcal (2) G-P(sol) polarization free energy of solvation -55.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds