Wall clock time and date at job start Tue Mar 31 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.33993 * 124.92586 * 90.00216 * 14 13 12 16 16 C 1.46658 * 106.10867 * 179.97438 * 15 14 13 17 17 C 1.39503 * 134.66157 * 180.02562 * 16 15 14 18 18 C 1.38400 * 117.97952 * 179.97438 * 17 16 15 19 19 Cl 1.73605 * 120.35349 * 180.02562 * 18 17 16 20 20 C 1.38703 * 119.28388 * 0.02562 * 18 17 16 21 21 N 1.31637 * 121.58336 * 359.97106 * 20 18 17 22 22 C 1.32505 * 121.72971 * 0.05139 * 21 20 18 23 23 O 1.34459 * 124.91492 * 269.69230 * 14 13 12 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 29 29 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 30 30 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 31 31 H 1.08011 * 126.94651 * 359.97170 * 15 14 13 32 32 H 1.07998 * 121.00996 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.20446 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.8124 -1.1655 -4.4394 16 6 2.7219 -1.7366 -5.4382 17 6 2.5549 -2.5027 -6.5920 18 6 3.6872 -2.8646 -7.3006 19 17 3.5508 -3.8170 -8.7457 20 6 4.9322 -2.4582 -6.8438 21 7 5.0635 -1.7352 -5.7516 22 6 4.0148 -1.3605 -5.0337 23 8 3.8805 -0.6309 -3.9080 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 1.4496 -1.4978 -1.4101 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 0.7356 -1.2474 -4.4197 32 1 1.5718 -2.8043 -6.9222 33 1 5.8150 -2.7410 -7.3980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560574841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:46 Heat of formation + Delta-G solvation = 20.542838 kcal Electronic energy + Delta-G solvation = -18436.391705 eV Core-core repulsion = 15295.969754 eV Total energy + Delta-G solvation = -3140.421951 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.77588 -40.23191 -37.99608 -37.60621 -35.04679 -34.39620 -32.43236 -31.83496 -29.65234 -27.25417 -26.57545 -24.75446 -23.56803 -22.44211 -22.13047 -19.32798 -18.79243 -17.94907 -17.72155 -17.48161 -16.76150 -16.21081 -15.60257 -15.04994 -14.95993 -14.80871 -14.70695 -14.23151 -14.01533 -14.01007 -13.58454 -13.12133 -12.85602 -12.80497 -12.76185 -12.35710 -12.28295 -12.14976 -11.96209 -11.81637 -11.09629 -10.71781 -10.48154 -9.91710 -9.63443 -9.07240 -8.10559 -6.21261 -0.42741 -0.23384 0.80254 1.12923 1.23144 1.44040 1.45155 1.52988 2.39740 2.44226 3.08663 3.18287 3.19191 3.56957 3.62260 3.68356 3.93630 4.13837 4.27562 4.39182 4.55275 4.63784 4.75361 4.77079 4.92027 5.06535 5.07098 5.18980 5.39359 5.69849 5.80863 5.85354 6.25123 6.51415 6.56287 6.72519 6.91217 7.48355 8.94348 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.037111 B = 0.003015 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.303131 B = 9284.296579 C = 9489.653309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.010 0.990 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.690 5.690 13 C 0.131 3.869 14 C 0.056 3.944 15 C -0.183 4.183 16 C -0.170 4.170 17 C -0.008 4.008 18 C -0.109 4.109 19 Cl -0.029 7.029 20 C 0.158 3.842 21 N -0.487 5.487 22 C 0.226 3.774 23 O -0.199 6.199 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.262 0.738 28 H 0.339 0.661 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.195 0.805 32 H 0.180 0.820 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -6.734 -22.201 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.110 3.890 3 H 0.028 0.972 4 C -0.559 4.559 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.321 5.321 13 C 0.003 3.997 14 C 0.008 3.992 15 C -0.203 4.203 16 C -0.173 4.173 17 C -0.034 4.034 18 C -0.138 4.138 19 Cl 0.000 7.000 20 C -0.006 4.006 21 N -0.204 5.204 22 C 0.052 3.948 23 O -0.098 6.098 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.157 0.843 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.212 0.788 32 H 0.197 0.803 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.197 -6.176 -21.493 22.470 hybrid contribution -1.304 -0.387 0.550 1.467 sum 0.893 -6.563 -20.942 21.965 Atomic orbital electron populations 1.22256 0.99100 0.99674 1.00756 1.18965 0.90619 0.92914 0.86492 0.97172 1.21413 1.30670 1.12623 0.91201 0.93066 1.25637 0.95423 0.95859 1.01658 1.69973 1.37793 1.23989 1.24142 0.85632 0.78531 0.78800 0.78760 1.20278 1.20825 1.19653 1.60658 1.59019 1.09585 1.02841 1.20539 1.00136 0.94038 0.85027 1.22691 0.78848 1.00186 0.97514 1.22478 1.01390 1.02284 0.94123 1.20722 0.93934 1.03726 0.98966 1.21171 1.00390 0.91880 0.89995 1.21808 0.95536 1.02549 0.93909 1.98395 1.98247 1.69552 1.33847 1.23158 0.97665 0.90515 0.89236 1.66460 1.32016 1.14831 1.07097 1.19997 0.91376 0.95101 0.88369 1.83952 1.29889 1.59604 1.36317 0.91871 0.94666 0.94460 0.92887 0.84333 0.89383 0.90332 0.78773 0.80258 0.77593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.02 8.94 71.98 0.64 -6.37 16 2 C 0.22 10.51 2.57 44.17 0.11 10.62 16 3 H 0.01 0.55 7.80 -2.39 -0.02 0.53 16 4 C -0.52 -28.55 8.84 25.60 0.23 -28.32 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -51.77 11.32 21.45 0.24 -51.52 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.69 -27.80 6.22 -499.47 -3.11 -30.91 16 13 C 0.13 4.29 5.98 85.56 0.51 4.80 16 14 C 0.06 1.70 6.74 24.72 0.17 1.87 16 15 C -0.18 -4.44 11.01 23.50 0.26 -4.19 16 16 C -0.17 -4.25 6.41 -20.20 -0.13 -4.38 16 17 C -0.01 -0.15 10.02 22.61 0.23 0.08 16 18 C -0.11 -1.89 6.34 22.42 0.14 -1.75 16 19 Cl -0.03 -0.39 28.99 -2.72 -0.08 -0.47 16 20 C 0.16 3.12 10.95 84.83 0.93 4.05 16 21 N -0.49 -13.87 10.38 -308.09 -3.20 -17.06 16 22 C 0.23 7.06 8.58 85.17 0.73 7.79 16 23 O -0.20 -7.04 10.57 -9.12 -0.10 -7.14 16 24 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 25 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 26 H 0.04 1.38 7.45 -2.38 -0.02 1.36 16 27 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.34 12.58 8.46 -89.69 -0.76 11.82 16 29 H 0.09 2.44 7.44 -2.38 -0.02 2.42 16 30 H 0.08 2.73 8.06 -2.39 -0.02 2.71 16 31 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -63.92 303.73 0.45 -63.48 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.39 Total: 12.52 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.27 Total: -14.66 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -6.06 Total: -99.50 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.10 Total: -7.14 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -63.92 0.45 -63.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560574841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.019 kcal (2) G-P(sol) polarization free energy of solvation -63.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds