Wall clock time and date at job start Tue Mar 31 2020 01:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47219 * 2 1 4 4 C 1.50704 * 109.47423 * 239.99624 * 2 1 3 5 5 H 1.08004 * 119.99933 * 239.99865 * 4 2 1 6 6 C 1.37875 * 119.99594 * 59.99810 * 4 2 1 7 7 N 1.31511 * 120.00258 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99621 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47225 * 60.00132 * 8 6 4 10 10 H 1.48493 * 109.46934 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46819 * 299.99967 * 8 6 4 12 12 O 1.42904 * 109.47296 * 119.99356 * 2 1 3 13 13 C 1.34918 * 117.00415 * 270.00441 * 12 2 1 14 14 O 1.21633 * 120.00129 * 359.97438 * 13 12 2 15 15 C 1.46199 * 120.00244 * 179.97438 * 13 12 2 16 16 C 1.35339 * 120.00206 * 173.41286 * 15 13 12 17 17 C 1.46312 * 119.99777 * 351.49619 * 16 15 13 18 18 C 1.38128 * 125.81705 * 140.75750 * 17 16 15 19 19 C 1.39770 * 106.84406 * 179.76420 * 18 17 16 20 20 C 1.37803 * 106.88924 * 0.40745 * 19 18 17 21 21 C 1.46863 * 125.77704 * 179.84314 * 20 19 18 22 22 O 1.21576 * 119.99820 * 359.72482 * 21 20 19 23 23 O 1.34862 * 120.00400 * 179.71783 * 21 20 19 24 24 O 1.34558 * 125.81996 * 320.78104 * 17 16 15 25 25 H 1.09004 * 109.46904 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47464 * 300.00165 * 1 2 3 27 27 H 1.09002 * 109.47431 * 60.00437 * 1 2 3 28 28 H 0.97000 * 119.99517 * 179.97438 * 7 6 4 29 29 H 1.07996 * 120.00311 * 353.41222 * 15 13 12 30 30 H 1.08005 * 120.00349 * 171.49517 * 16 15 13 31 31 H 1.08005 * 126.57875 * 0.03847 * 18 17 16 32 32 H 1.07998 * 126.55656 * 180.29296 * 19 18 17 33 33 H 0.96704 * 117.00421 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0079 9 1 1.8259 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2203 11 1 3.8064 -1.1211 -4.0080 12 8 2.0063 -0.6735 1.1669 13 6 2.2105 0.0788 2.2680 14 8 1.9900 1.2746 2.2371 15 6 2.6966 -0.5431 3.4986 16 6 3.0283 0.2271 4.5609 17 6 3.0796 1.6826 4.4215 18 6 2.6526 2.6002 5.3615 19 6 2.8887 3.8692 4.8252 20 6 3.4410 3.6799 3.5770 21 6 3.8475 4.7421 2.6478 22 8 3.7009 5.9088 2.9568 23 8 4.3835 4.4234 1.4520 24 8 3.5503 2.3556 3.3555 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7095 1.1615 -3.4845 29 1 2.7911 -1.6172 3.5600 30 1 3.2551 -0.2327 5.5115 31 1 2.2232 2.3795 6.3277 32 1 2.6769 4.8168 5.2978 33 1 4.6360 5.1568 0.8746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603118769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:48 Heat of formation + Delta-G solvation = -138.262049 kcal Electronic energy + Delta-G solvation = -21630.027580 eV Core-core repulsion = 18009.717416 eV Total energy + Delta-G solvation = -3620.310164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.46246 -39.85595 -39.50286 -36.14017 -36.09107 -33.84041 -33.22461 -32.90565 -29.86885 -29.19598 -25.51669 -25.23600 -23.30205 -21.78152 -21.16810 -20.37348 -19.20623 -18.35924 -17.75133 -17.10679 -16.67156 -16.37501 -15.67362 -15.16566 -14.90799 -14.72323 -14.13114 -13.95408 -13.62258 -13.10432 -13.02941 -12.82408 -12.46497 -12.11028 -11.84514 -11.57150 -11.25663 -11.07547 -10.94728 -10.86337 -10.40866 -10.28277 -10.17012 -9.95856 -9.76425 -9.48256 -8.88184 -8.47117 -8.21617 -6.16789 -4.23927 0.40690 1.31419 2.41518 2.54694 2.96270 3.26873 3.29944 3.30743 3.32502 3.50473 3.67645 4.34065 4.49583 4.82236 5.12927 5.16182 5.20659 5.40916 5.54729 5.66678 5.72131 5.93403 6.13178 6.33734 6.39165 6.64076 6.89000 6.91869 6.97695 7.15105 7.60087 7.73713 7.87150 7.92798 8.14757 8.61598 8.88826 9.41524 10.90652 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.005203 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.961734 B = 5380.154797 C = 6385.493859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.212 3.788 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.342 6.342 13 C 0.467 3.533 14 O -0.498 6.498 15 C -0.133 4.133 16 C -0.034 4.034 17 C 0.065 3.935 18 C -0.206 4.206 19 C -0.114 4.114 20 C -0.056 4.056 21 C 0.575 3.425 22 O -0.505 6.505 23 O -0.495 6.495 24 O -0.105 6.105 25 H 0.036 0.964 26 H 0.014 0.986 27 H 0.098 0.902 28 H 0.266 0.734 29 H 0.154 0.846 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.986 1.519 14.855 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.159 3.841 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.258 6.258 13 C 0.311 3.689 14 O -0.389 6.389 15 C -0.152 4.152 16 C -0.053 4.053 17 C 0.011 3.989 18 C -0.225 4.225 19 C -0.133 4.133 20 C -0.108 4.108 21 C 0.420 3.580 22 O -0.396 6.396 23 O -0.306 6.306 24 O 0.003 5.997 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.172 0.828 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 4.793 1.851 14.664 15.538 hybrid contribution 0.163 0.193 -1.219 1.245 sum 4.956 2.043 13.445 14.474 Atomic orbital electron populations 1.22183 0.97764 0.99992 1.01335 1.20240 0.91338 0.94281 0.78220 0.93603 1.20986 1.32523 1.13444 0.88907 0.91409 1.24884 0.94913 0.95075 0.99050 1.69895 1.36041 1.22524 1.24211 0.86338 0.79228 0.79533 0.81056 1.19939 1.21043 1.19982 1.86180 1.75649 1.43075 1.20928 1.21224 0.76453 0.85654 0.85539 1.90863 1.48038 1.15880 1.84121 1.22943 0.99439 1.01717 0.91131 1.21641 0.97645 0.86825 0.99146 1.21185 0.99663 0.92966 0.85055 1.22026 1.07831 0.91002 1.01607 1.21945 0.99097 0.99618 0.92670 1.20939 1.12144 0.81345 0.96329 1.18979 0.73636 0.85716 0.79704 1.90950 1.53291 1.18718 1.76682 1.84749 1.73657 1.44261 1.27920 1.84368 1.61824 1.16352 1.37144 0.94499 0.96672 0.88346 0.92387 0.82805 0.81383 0.82110 0.82004 0.72396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.31 37.15 0.35 -3.65 16 2 C 0.21 5.78 2.51 -27.88 -0.07 5.71 16 3 H 0.05 1.39 7.11 -51.93 -0.37 1.02 16 4 C -0.52 -14.77 8.89 -34.44 -0.31 -15.07 16 5 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 O -0.34 -8.18 9.75 -41.09 -0.40 -8.58 16 13 C 0.47 9.66 7.65 33.93 0.26 9.92 16 14 O -0.50 -11.59 11.75 -27.60 -0.32 -11.92 16 15 C -0.13 -1.85 10.20 -37.42 -0.38 -2.24 16 16 C -0.03 -0.39 10.16 -37.37 -0.38 -0.77 16 17 C 0.07 0.95 5.57 -36.38 -0.20 0.75 16 18 C -0.21 -2.52 10.88 -39.05 -0.42 -2.95 16 19 C -0.11 -1.56 10.64 -39.17 -0.42 -1.97 16 20 C -0.06 -0.93 7.21 -36.25 -0.26 -1.19 16 21 C 0.57 9.45 8.32 34.22 0.28 9.73 16 22 O -0.51 -8.62 17.65 -19.32 -0.34 -8.96 16 23 O -0.50 -7.54 13.44 -42.43 -0.57 -8.11 16 24 O -0.10 -1.91 7.82 -22.33 -0.17 -2.08 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 31 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.42 3.95 9.11 45.56 0.42 4.37 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -35.48 306.16 -5.59 -41.07 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.35 Total: 2.78 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.65 Total: -0.07 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.63 Total: -24.93 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.81 Total: -39.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.48 -5.59 -41.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.190 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds