Wall clock time and date at job start Tue Mar 31 2020 01:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47219 * 2 1 4 4 C 1.50704 * 109.47423 * 239.99624 * 2 1 3 5 5 H 1.08004 * 119.99933 * 239.99865 * 4 2 1 6 6 C 1.37875 * 119.99594 * 59.99810 * 4 2 1 7 7 N 1.31511 * 120.00258 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99621 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47225 * 60.00132 * 8 6 4 10 10 H 1.48493 * 109.46934 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46819 * 299.99967 * 8 6 4 12 12 O 1.42904 * 109.47296 * 119.99356 * 2 1 3 13 13 C 1.34918 * 117.00415 * 270.00441 * 12 2 1 14 14 O 1.21633 * 120.00129 * 359.97438 * 13 12 2 15 15 C 1.46199 * 120.00244 * 179.97438 * 13 12 2 16 16 C 1.35339 * 120.00206 * 173.41286 * 15 13 12 17 17 C 1.46312 * 119.99777 * 351.49619 * 16 15 13 18 18 C 1.38128 * 125.81705 * 140.75750 * 17 16 15 19 19 C 1.39770 * 106.84406 * 179.76420 * 18 17 16 20 20 C 1.37803 * 106.88924 * 0.40745 * 19 18 17 21 21 C 1.46863 * 125.77704 * 179.84314 * 20 19 18 22 22 O 1.21576 * 119.99820 * 359.72482 * 21 20 19 23 23 O 1.34862 * 120.00400 * 179.71783 * 21 20 19 24 24 O 1.34558 * 125.81996 * 320.78104 * 17 16 15 25 25 H 1.09004 * 109.46904 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47464 * 300.00165 * 1 2 3 27 27 H 1.09002 * 109.47431 * 60.00437 * 1 2 3 28 28 H 0.97000 * 119.99517 * 179.97438 * 7 6 4 29 29 H 1.07996 * 120.00311 * 353.41222 * 15 13 12 30 30 H 1.08005 * 120.00349 * 171.49517 * 16 15 13 31 31 H 1.08005 * 126.57875 * 0.03847 * 18 17 16 32 32 H 1.07998 * 126.55656 * 180.29296 * 19 18 17 33 33 H 0.96704 * 117.00421 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0079 9 1 1.8259 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2203 11 1 3.8064 -1.1211 -4.0080 12 8 2.0063 -0.6735 1.1669 13 6 2.2105 0.0788 2.2680 14 8 1.9900 1.2746 2.2371 15 6 2.6966 -0.5431 3.4986 16 6 3.0283 0.2271 4.5609 17 6 3.0796 1.6826 4.4215 18 6 2.6526 2.6002 5.3615 19 6 2.8887 3.8692 4.8252 20 6 3.4410 3.6799 3.5770 21 6 3.8475 4.7421 2.6478 22 8 3.7009 5.9088 2.9568 23 8 4.3835 4.4234 1.4520 24 8 3.5503 2.3556 3.3555 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7095 1.1615 -3.4845 29 1 2.7911 -1.6172 3.5600 30 1 3.2551 -0.2327 5.5115 31 1 2.2232 2.3795 6.3277 32 1 2.6769 4.8168 5.2978 33 1 4.6360 5.1568 0.8746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603118769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:48 Heat of formation + Delta-G solvation = -162.312859 kcal Electronic energy + Delta-G solvation = -21631.070501 eV Core-core repulsion = 18009.717416 eV Total energy + Delta-G solvation = -3621.353085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.59758 -41.27638 -41.01767 -37.85930 -37.36217 -35.31083 -34.99280 -34.02459 -31.76356 -30.52664 -27.50148 -26.68732 -24.70579 -22.97560 -22.67926 -21.83080 -20.58927 -19.59244 -19.13119 -18.64471 -18.48238 -17.71914 -17.30849 -16.74601 -16.53331 -16.27346 -15.42141 -15.18888 -14.86829 -14.47893 -14.27953 -14.15996 -13.97743 -13.86089 -13.33474 -13.17264 -13.00675 -12.83365 -12.82775 -12.40711 -12.22182 -12.17930 -11.56050 -11.45221 -11.23317 -11.00568 -10.91665 -10.59119 -9.33415 -8.29241 -6.46681 -0.73615 0.17271 1.31787 1.40453 1.44030 1.44826 1.52838 1.77272 2.08294 2.11047 2.29757 2.45599 3.01371 3.46415 3.82539 3.99618 4.10672 4.40795 4.49327 4.50953 4.61994 4.71284 4.75708 4.81375 4.91004 5.06000 5.18284 5.25435 5.41446 5.47329 5.62020 5.90503 5.92375 6.10230 6.58998 6.75141 6.98997 7.26298 8.78418 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.005203 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.961734 B = 5380.154797 C = 6385.493859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.218 3.782 3 H 0.000 1.000 4 C -0.549 4.549 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.269 1.269 12 O -0.354 6.354 13 C 0.453 3.547 14 O -0.534 6.534 15 C -0.163 4.163 16 C 0.013 3.987 17 C 0.032 3.968 18 C -0.184 4.184 19 C -0.104 4.104 20 C -0.101 4.101 21 C 0.572 3.428 22 O -0.521 6.521 23 O -0.509 6.509 24 O -0.143 6.143 25 H 0.046 0.954 26 H 0.020 0.980 27 H 0.077 0.923 28 H 0.270 0.730 29 H 0.193 0.807 30 H 0.238 0.762 31 H 0.209 0.791 32 H 0.184 0.816 33 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -0.109 16.919 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.806 3.194 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.193 1.193 12 O -0.271 6.271 13 C 0.301 3.699 14 O -0.427 6.427 15 C -0.181 4.181 16 C -0.004 4.004 17 C -0.021 4.021 18 C -0.202 4.202 19 C -0.124 4.124 20 C -0.152 4.152 21 C 0.418 3.582 22 O -0.414 6.414 23 O -0.323 6.323 24 O -0.037 6.037 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.210 0.790 30 H 0.254 0.746 31 H 0.226 0.774 32 H 0.202 0.798 33 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 5.141 0.226 16.745 17.518 hybrid contribution 0.078 0.819 -1.714 1.901 sum 5.219 1.044 15.031 15.945 Atomic orbital electron populations 1.21987 0.97092 1.00271 1.00505 1.19839 0.91837 0.92037 0.79856 0.98247 1.21297 1.33409 1.13893 0.90033 0.91396 1.25867 0.94670 0.95641 1.02269 1.70029 1.36687 1.23746 1.25195 0.85226 0.78770 0.78714 0.76659 1.18576 1.20245 1.19345 1.86153 1.76358 1.43328 1.21217 1.22553 0.75593 0.85531 0.86268 1.90852 1.49677 1.17429 1.84705 1.23026 1.03066 1.03676 0.88371 1.22560 0.92561 0.84778 1.00519 1.22175 1.00114 0.94973 0.84810 1.22589 1.05679 0.89385 1.02518 1.22416 0.97124 1.01434 0.91400 1.21321 1.14714 0.81263 0.97894 1.19148 0.73375 0.85820 0.79858 1.90916 1.54259 1.19116 1.77084 1.84725 1.73549 1.45766 1.28214 1.84327 1.63110 1.17102 1.39133 0.93453 0.96136 0.90420 0.92070 0.78973 0.74629 0.77414 0.79846 0.70188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.50 9.31 71.98 0.67 -6.83 16 2 C 0.22 12.41 2.51 29.85 0.07 12.48 16 3 H 0.00 -0.02 7.11 -2.39 -0.02 -0.03 16 4 C -0.55 -31.96 8.89 25.60 0.23 -31.73 16 5 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 8 Si 0.98 43.55 29.54 68.60 2.03 45.58 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 O -0.35 -17.41 9.75 -58.33 -0.57 -17.98 16 13 C 0.45 19.05 7.65 69.89 0.53 19.59 16 14 O -0.53 -25.84 11.75 27.28 0.32 -25.52 16 15 C -0.16 -4.14 10.20 23.67 0.24 -3.90 16 16 C 0.01 0.24 10.16 23.70 0.24 0.48 16 17 C 0.03 0.87 5.57 24.34 0.14 1.01 16 18 C -0.18 -3.85 10.88 22.61 0.25 -3.60 16 19 C -0.10 -2.70 10.64 22.54 0.24 -2.46 16 20 C -0.10 -3.44 7.21 24.43 0.18 -3.27 16 21 C 0.57 19.72 8.32 70.08 0.58 20.30 16 22 O -0.52 -18.34 17.65 19.59 0.35 -17.99 16 23 O -0.51 -16.58 13.44 -56.32 -0.76 -17.34 16 24 O -0.14 -5.28 7.82 16.04 0.13 -5.15 16 25 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.08 4.45 6.07 -2.39 -0.01 4.43 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.24 1.04 8.06 -2.91 -0.02 1.02 16 31 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 33 H 0.44 9.04 9.11 -74.05 -0.67 8.37 16 Total: -1.00 -83.07 306.16 6.04 -77.02 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.49 Total: 12.00 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 3.82 Total: 3.36 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.24 Total: -53.99 kcal Atomic # 8 Polarization: -83.44 SS G_CDS: -0.53 Total: -83.98 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -83.07 6.04 -77.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.289 kcal (2) G-P(sol) polarization free energy of solvation -83.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds