Wall clock time and date at job start Tue Mar 31 2020 01:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46865 * 2 1 4 4 C 1.50690 * 109.47381 * 239.99603 * 2 1 3 5 5 H 1.08001 * 120.00636 * 274.99581 * 4 2 1 6 6 C 1.37880 * 120.00226 * 94.99990 * 4 2 1 7 7 N 1.31517 * 120.00276 * 184.91499 * 6 4 2 8 8 Si 1.86803 * 119.99648 * 4.91226 * 6 4 2 9 9 H 1.48497 * 109.47078 * 84.83646 * 8 6 4 10 10 H 1.48499 * 109.46754 * 204.83723 * 8 6 4 11 11 H 1.48503 * 109.47178 * 324.83326 * 8 6 4 12 12 O 1.42906 * 109.46812 * 119.99287 * 2 1 3 13 13 C 1.34920 * 117.00076 * 270.00233 * 12 2 1 14 14 O 1.21630 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.46206 * 119.99887 * 180.02562 * 13 12 2 16 16 C 1.35342 * 119.99959 * 180.02562 * 15 13 12 17 17 C 1.46306 * 120.00041 * 179.97438 * 16 15 13 18 18 C 1.38120 * 125.82003 * 180.02562 * 17 16 15 19 19 C 1.39771 * 106.84471 * 179.72379 * 18 17 16 20 20 C 1.37811 * 106.88954 * 0.38000 * 19 18 17 21 21 C 1.46856 * 125.77254 * 179.87623 * 20 19 18 22 22 O 1.21576 * 120.00542 * 359.71886 * 21 20 19 23 23 O 1.34868 * 119.99760 * 179.71927 * 21 20 19 24 24 O 1.34571 * 125.81807 * 359.97348 * 17 16 15 25 25 H 1.09008 * 109.46597 * 175.03386 * 1 2 3 26 26 H 1.08994 * 109.47357 * 295.03735 * 1 2 3 27 27 H 1.08997 * 109.46907 * 55.04069 * 1 2 3 28 28 H 0.96995 * 119.99916 * 179.97438 * 7 6 4 29 29 H 1.07997 * 119.99972 * 359.97438 * 15 13 12 30 30 H 1.08006 * 119.99850 * 359.97438 * 16 15 13 31 31 H 1.07998 * 126.57965 * 359.94563 * 18 17 16 32 32 H 1.08004 * 126.55439 * 180.26667 * 19 18 17 33 33 H 0.96703 * 117.00031 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1357 -1.7855 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7061 -0.6134 -3.4621 8 14 2.3135 1.8790 -2.3175 9 1 3.5990 2.3949 -1.7823 10 1 2.1057 2.3988 -3.6929 11 1 1.1985 2.3273 -1.4452 12 8 2.0063 -0.6735 1.1669 13 6 2.2104 0.0789 2.2681 14 8 1.9892 1.2745 2.2373 15 6 2.6976 -0.5429 3.4984 16 6 2.9018 0.2118 4.6031 17 6 3.3888 -0.4105 5.8344 18 6 3.6373 0.2417 7.0263 19 6 4.0795 -0.7258 7.9330 20 6 4.0928 -1.9285 7.2603 21 6 4.4939 -3.2235 7.8248 22 8 4.8595 -3.2951 8.9821 23 8 4.4567 -4.3333 7.0595 24 8 3.6699 -1.7162 5.9991 25 1 -0.3633 -1.0239 -0.0890 26 1 -0.3634 0.4349 0.9310 27 1 -0.3633 0.5888 -0.8422 28 1 2.9365 -0.1051 -4.2555 29 1 2.8936 -1.6046 3.5259 30 1 2.7054 1.2735 4.5757 31 1 3.5105 1.2964 7.2214 32 1 4.3591 -0.5618 8.9632 33 1 4.7297 -5.1626 7.4752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603118770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:50 Heat of formation + Delta-G solvation = -169.446416 kcal Electronic energy + Delta-G solvation = -20357.271202 eV Core-core repulsion = 16735.608783 eV Total energy + Delta-G solvation = -3621.662419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.79836 -41.40963 -41.04607 -37.94661 -37.32040 -35.23735 -35.12213 -34.27071 -32.59488 -30.75092 -27.50262 -26.92975 -24.59199 -23.03118 -22.61875 -21.74278 -20.74482 -19.58614 -19.40073 -18.89362 -18.51761 -17.76235 -17.59315 -16.89100 -16.58255 -16.34315 -16.22432 -14.96454 -14.85133 -14.60513 -14.43596 -14.28315 -14.18033 -13.79735 -13.71536 -13.38728 -13.02866 -12.92513 -12.78236 -12.60250 -12.19862 -11.98343 -11.84068 -11.62895 -11.40558 -11.16625 -11.13490 -10.86971 -9.41632 -8.46943 -6.57693 -1.00764 0.15471 1.18232 1.24769 1.27516 1.29952 1.40855 1.70296 1.89533 2.02848 2.12662 2.20620 2.89936 3.41193 3.67161 3.94943 3.97212 4.06413 4.22053 4.36121 4.46093 4.57911 4.58840 4.65448 4.81781 4.88966 5.05643 5.21610 5.30363 5.31280 5.39376 5.60641 5.70624 6.13138 6.51128 6.78114 6.86000 7.11035 8.68613 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.030041 B = 0.003147 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.841779 B = 8896.476073 C = 9375.947840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.179 3.821 3 H 0.040 0.960 4 C -0.535 4.535 5 H 0.045 0.955 6 C 0.033 3.967 7 N -0.925 5.925 8 Si 0.932 3.068 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.247 1.247 12 O -0.351 6.351 13 C 0.481 3.519 14 O -0.543 6.543 15 C -0.169 4.169 16 C 0.023 3.977 17 C 0.028 3.972 18 C -0.158 4.158 19 C -0.097 4.097 20 C -0.081 4.081 21 C 0.577 3.423 22 O -0.515 6.515 23 O -0.503 6.503 24 O -0.157 6.157 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.276 0.724 29 H 0.151 0.849 30 H 0.186 0.814 31 H 0.205 0.795 32 H 0.193 0.807 33 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 0.734 24.524 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.125 3.875 3 H 0.058 0.942 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.168 4.168 7 N -0.563 5.563 8 Si 0.754 3.246 9 H -0.192 1.192 10 H -0.192 1.192 11 H -0.171 1.171 12 O -0.267 6.267 13 C 0.329 3.671 14 O -0.437 6.437 15 C -0.188 4.188 16 C 0.005 3.995 17 C -0.024 4.024 18 C -0.177 4.177 19 C -0.116 4.116 20 C -0.132 4.132 21 C 0.422 3.578 22 O -0.407 6.407 23 O -0.318 6.318 24 O -0.053 6.053 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.168 0.832 30 H 0.203 0.797 31 H 0.222 0.778 32 H 0.210 0.790 33 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 2.031 1.140 24.156 24.268 hybrid contribution 0.294 -0.146 -0.417 0.530 sum 2.325 0.994 23.739 23.873 Atomic orbital electron populations 1.22186 0.95441 1.02159 1.00897 1.20460 0.93114 0.93330 0.80566 0.94200 1.20957 1.46136 0.94851 0.95307 0.93626 1.25720 0.92944 1.03628 0.94495 1.69967 1.45336 1.38403 1.02565 0.85973 0.80353 0.79612 0.78669 1.19230 1.19202 1.17087 1.86328 1.75995 1.43423 1.20918 1.21770 0.74565 0.85221 0.85529 1.90782 1.50523 1.17021 1.85337 1.22449 1.04161 1.02326 0.89829 1.21817 0.90917 1.00470 0.86339 1.21410 1.03719 0.80608 0.96669 1.22725 1.02309 1.02882 0.89745 1.22532 0.97962 0.88881 1.02260 1.21423 1.12970 0.94681 0.84077 1.18868 0.73535 0.82775 0.82589 1.90990 1.45724 1.86138 1.17844 1.84657 1.80224 1.19976 1.46946 1.84159 1.63861 1.27474 1.29760 0.92154 0.93094 0.91640 0.91426 0.83165 0.79706 0.77763 0.79014 0.69535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.46 9.51 71.98 0.68 -5.78 16 2 C 0.18 8.98 2.17 29.85 0.06 9.05 16 3 H 0.04 2.04 4.27 -2.39 -0.01 2.03 16 4 C -0.54 -31.25 9.23 25.60 0.24 -31.01 16 5 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 6 C 0.03 1.90 5.47 84.65 0.46 2.36 16 7 N -0.92 -56.17 13.96 21.45 0.30 -55.87 16 8 Si 0.93 43.64 26.99 68.60 1.85 45.49 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.25 -10.99 6.82 99.48 0.68 -10.31 16 12 O -0.35 -16.25 9.75 -58.36 -0.57 -16.82 16 13 C 0.48 18.58 7.84 69.89 0.55 19.13 16 14 O -0.54 -22.48 15.47 19.41 0.30 -22.18 16 15 C -0.17 -4.74 9.80 23.67 0.23 -4.51 16 16 C 0.02 0.47 9.64 23.70 0.23 0.70 16 17 C 0.03 0.52 7.02 24.34 0.17 0.69 16 18 C -0.16 -2.00 10.88 22.61 0.25 -1.76 16 19 C -0.10 -1.36 10.64 22.54 0.24 -1.12 16 20 C -0.08 -1.55 7.21 24.43 0.18 -1.37 16 21 C 0.58 10.75 8.32 70.08 0.58 11.33 16 22 O -0.52 -11.16 17.65 19.59 0.35 -10.81 16 23 O -0.50 -7.43 13.44 -56.38 -0.76 -8.19 16 24 O -0.16 -3.46 10.29 -8.76 -0.09 -3.55 16 25 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.15 3.99 7.78 -2.91 -0.02 3.97 16 30 H 0.19 3.24 7.53 -2.91 -0.02 3.22 16 31 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.44 1.77 9.11 -74.06 -0.67 1.10 16 Total: -1.00 -75.02 311.91 5.72 -69.31 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.46 Total: 4.90 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 3.87 Total: -2.29 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.30 Total: -55.87 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -0.77 Total: -61.55 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.85 Total: 45.49 kcal Total: -75.02 5.72 -69.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.138 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds