Wall clock time and date at job start Tue Mar 31 2020 01:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 C 1.50694 * 109.47105 * 120.00046 * 2 1 3 5 5 H 1.08007 * 119.99601 * 119.99681 * 4 2 1 6 6 C 1.37877 * 120.00459 * 300.00107 * 4 2 1 7 7 N 1.31514 * 119.99855 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47296 * 59.99965 * 8 6 4 10 10 H 1.48502 * 109.46793 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47011 * 299.99473 * 8 6 4 12 12 O 1.42898 * 109.46985 * 240.00373 * 2 1 3 13 13 C 1.34929 * 116.99914 * 89.99932 * 12 2 1 14 14 O 1.21624 * 120.00478 * 359.97438 * 13 12 2 15 15 C 1.46201 * 119.99617 * 179.97438 * 13 12 2 16 16 C 1.35341 * 119.99637 * 180.02562 * 15 13 12 17 17 C 1.46314 * 119.99811 * 179.97438 * 16 15 13 18 18 C 1.38127 * 125.82024 * 180.02562 * 17 16 15 19 19 C 1.39762 * 106.84913 * 179.72853 * 18 17 16 20 20 C 1.37813 * 106.88734 * 0.37512 * 19 18 17 21 21 C 1.46863 * 125.77628 * 179.87694 * 20 19 18 22 22 O 1.21579 * 119.99760 * 359.72270 * 21 20 19 23 23 O 1.34859 * 120.00444 * 179.72057 * 21 20 19 24 24 O 1.34568 * 125.81924 * 359.97438 * 17 16 15 25 25 H 1.08999 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47081 * 299.99760 * 1 2 3 27 27 H 1.08999 * 109.47450 * 59.99694 * 1 2 3 28 28 H 0.96995 * 120.00024 * 180.02562 * 7 6 4 29 29 H 1.07997 * 120.00347 * 0.02562 * 15 13 12 30 30 H 1.08001 * 120.00500 * 359.97438 * 16 15 13 31 31 H 1.08002 * 126.57280 * 359.95091 * 18 17 16 32 32 H 1.07997 * 126.56047 * 180.27692 * 19 18 17 33 33 H 0.96700 * 117.00381 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6035 8 14 2.3225 -1.1197 4.0078 9 1 3.8075 -1.1191 4.0076 10 1 1.8269 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0080 12 8 2.0063 -0.6736 -1.1668 13 6 2.2104 0.0789 -2.2680 14 8 1.9892 1.2745 -2.2373 15 6 2.6976 -0.5430 -3.4982 16 6 2.9029 0.2119 -4.6027 17 6 3.3910 -0.4103 -5.8337 18 6 3.6415 0.2422 -7.0250 19 6 4.0961 -0.7230 -7.9278 20 6 4.0982 -1.9277 -7.2585 21 6 4.5015 -3.2224 -7.8223 22 8 4.8701 -3.2935 -8.9787 23 8 4.4631 -4.3324 -7.0574 24 8 3.6732 -1.7158 -5.9980 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7087 1.1611 3.4844 29 1 2.8937 -1.6046 -3.5257 30 1 2.7064 1.2735 -4.5754 31 1 3.5143 1.2968 -7.2202 32 1 4.3883 -0.5569 -8.9541 33 1 4.7384 -5.1613 -7.4724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603118772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:53 Heat of formation + Delta-G solvation = -147.660580 kcal Electronic energy + Delta-G solvation = -20271.359494 eV Core-core repulsion = 16650.641779 eV Total energy + Delta-G solvation = -3620.717715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.98917 -40.29361 -39.64810 -36.59155 -36.16463 -34.09010 -33.47608 -33.25739 -30.13653 -29.38882 -25.87694 -25.32873 -23.46380 -22.10688 -21.48931 -20.50714 -19.31383 -18.79350 -18.01693 -17.33119 -16.94289 -16.76830 -15.65319 -15.57481 -15.51106 -15.02707 -14.57624 -14.13313 -13.58258 -13.50782 -13.35675 -12.83152 -12.53219 -12.24986 -12.05965 -11.86524 -11.39435 -11.31796 -11.10595 -10.90674 -10.81791 -10.43834 -10.35915 -10.30951 -9.91766 -9.56845 -8.93320 -8.53532 -8.47408 -6.20184 -4.27571 -0.04177 1.06102 1.94072 2.22932 2.47170 2.78416 3.25629 3.28567 3.30512 3.42416 3.48615 4.26598 4.36641 4.47016 4.71931 4.97963 5.11117 5.12764 5.21299 5.41010 5.51711 5.71375 5.92200 5.94702 6.15530 6.48847 6.58935 6.85797 6.86856 7.08229 7.38810 7.55441 7.68771 7.86937 8.10184 8.54182 8.83951 9.38128 10.87259 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.002976 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.003380 B = 9406.982362 C =10114.473260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.210 3.790 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.340 6.340 13 C 0.480 3.520 14 O -0.514 6.514 15 C -0.125 4.125 16 C -0.034 4.034 17 C 0.064 3.936 18 C -0.193 4.193 19 C -0.100 4.100 20 C -0.069 4.069 21 C 0.574 3.426 22 O -0.497 6.497 23 O -0.501 6.501 24 O -0.138 6.138 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.145 0.855 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 -4.723 -19.382 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.157 3.843 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.255 6.255 13 C 0.325 3.675 14 O -0.406 6.406 15 C -0.145 4.145 16 C -0.052 4.052 17 C 0.011 3.989 18 C -0.212 4.212 19 C -0.119 4.119 20 C -0.120 4.120 21 C 0.418 3.582 22 O -0.387 6.387 23 O -0.313 6.313 24 O -0.033 6.033 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.187 0.813 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 5.158 -4.173 -19.061 20.182 hybrid contribution 0.383 -0.782 0.529 1.019 sum 5.541 -4.955 -18.532 19.967 Atomic orbital electron populations 1.22198 0.97562 1.00183 1.01468 1.20301 0.91550 0.94256 0.78160 0.93547 1.20998 1.32667 1.13561 0.88859 0.91296 1.24892 0.94873 0.95082 0.99091 1.69886 1.35928 1.22527 1.24318 0.86315 0.79231 0.79546 0.80941 1.19953 1.21023 1.19910 1.86206 1.75379 1.42987 1.20955 1.20975 0.75736 0.85432 0.85377 1.90827 1.48573 1.16217 1.84950 1.22787 0.98958 1.01653 0.91054 1.21599 0.96136 1.00212 0.87239 1.21411 1.00869 0.80423 0.96174 1.22247 1.05908 1.01537 0.91532 1.22125 0.98883 0.89672 1.01264 1.20992 1.13130 0.93601 0.84287 1.18888 0.74035 0.82402 0.82862 1.90998 1.44702 1.85776 1.17195 1.84683 1.80510 1.19202 1.46923 1.84177 1.63324 1.26772 1.29033 0.94373 0.88215 0.96508 0.92313 0.83772 0.81303 0.81244 0.81338 0.72023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.31 37.16 0.35 -3.59 16 2 C 0.21 5.61 2.51 -27.89 -0.07 5.54 16 3 H 0.05 1.36 7.11 -51.93 -0.37 0.99 16 4 C -0.52 -14.64 8.88 -34.44 -0.31 -14.94 16 5 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 O -0.34 -8.01 9.75 -41.12 -0.40 -8.41 16 13 C 0.48 9.69 7.83 33.93 0.27 9.96 16 14 O -0.51 -11.49 15.47 -19.36 -0.30 -11.79 16 15 C -0.13 -1.85 9.80 -37.42 -0.37 -2.22 16 16 C -0.03 -0.40 9.64 -37.37 -0.36 -0.76 16 17 C 0.06 0.70 7.02 -36.38 -0.26 0.44 16 18 C -0.19 -1.68 10.88 -39.05 -0.42 -2.11 16 19 C -0.10 -0.89 10.64 -39.17 -0.42 -1.31 16 20 C -0.07 -0.75 7.21 -36.25 -0.26 -1.01 16 21 C 0.57 5.82 8.32 34.22 0.28 6.11 16 22 O -0.50 -5.81 17.65 -19.33 -0.34 -6.16 16 23 O -0.50 -4.04 13.44 -42.42 -0.57 -4.61 16 24 O -0.14 -1.66 10.29 3.58 0.04 -1.62 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.14 1.92 7.78 -52.49 -0.41 1.51 16 30 H 0.17 1.86 7.52 -52.49 -0.39 1.46 16 31 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.42 1.14 9.11 45.56 0.42 1.56 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -33.19 312.26 -5.23 -38.42 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -2.31 Total: 0.27 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.66 Total: -2.26 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.63 Total: -24.49 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.58 Total: -32.58 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.19 -5.23 -38.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.239 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds