Wall clock time and date at job start Tue Mar 31 2020 01:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 C 1.50694 * 109.47105 * 120.00046 * 2 1 3 5 5 H 1.08007 * 119.99601 * 119.99681 * 4 2 1 6 6 C 1.37877 * 120.00459 * 300.00107 * 4 2 1 7 7 N 1.31514 * 119.99855 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47296 * 59.99965 * 8 6 4 10 10 H 1.48502 * 109.46793 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47011 * 299.99473 * 8 6 4 12 12 O 1.42898 * 109.46985 * 240.00373 * 2 1 3 13 13 C 1.34929 * 116.99914 * 89.99932 * 12 2 1 14 14 O 1.21624 * 120.00478 * 359.97438 * 13 12 2 15 15 C 1.46201 * 119.99617 * 179.97438 * 13 12 2 16 16 C 1.35341 * 119.99637 * 180.02562 * 15 13 12 17 17 C 1.46314 * 119.99811 * 179.97438 * 16 15 13 18 18 C 1.38127 * 125.82024 * 180.02562 * 17 16 15 19 19 C 1.39762 * 106.84913 * 179.72853 * 18 17 16 20 20 C 1.37813 * 106.88734 * 0.37512 * 19 18 17 21 21 C 1.46863 * 125.77628 * 179.87694 * 20 19 18 22 22 O 1.21579 * 119.99760 * 359.72270 * 21 20 19 23 23 O 1.34859 * 120.00444 * 179.72057 * 21 20 19 24 24 O 1.34568 * 125.81924 * 359.97438 * 17 16 15 25 25 H 1.08999 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47081 * 299.99760 * 1 2 3 27 27 H 1.08999 * 109.47450 * 59.99694 * 1 2 3 28 28 H 0.96995 * 120.00024 * 180.02562 * 7 6 4 29 29 H 1.07997 * 120.00347 * 0.02562 * 15 13 12 30 30 H 1.08001 * 120.00500 * 359.97438 * 16 15 13 31 31 H 1.08002 * 126.57280 * 359.95091 * 18 17 16 32 32 H 1.07997 * 126.56047 * 180.27692 * 19 18 17 33 33 H 0.96700 * 117.00381 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6035 8 14 2.3225 -1.1197 4.0078 9 1 3.8075 -1.1191 4.0076 10 1 1.8269 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0080 12 8 2.0063 -0.6736 -1.1668 13 6 2.2104 0.0789 -2.2680 14 8 1.9892 1.2745 -2.2373 15 6 2.6976 -0.5430 -3.4982 16 6 2.9029 0.2119 -4.6027 17 6 3.3910 -0.4103 -5.8337 18 6 3.6415 0.2422 -7.0250 19 6 4.0961 -0.7230 -7.9278 20 6 4.0982 -1.9277 -7.2585 21 6 4.5015 -3.2224 -7.8223 22 8 4.8701 -3.2935 -8.9787 23 8 4.4631 -4.3324 -7.0574 24 8 3.6732 -1.7158 -5.9980 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7087 1.1611 3.4844 29 1 2.8937 -1.6046 -3.5257 30 1 2.7064 1.2735 -4.5754 31 1 3.5143 1.2968 -7.2202 32 1 4.3883 -0.5569 -8.9541 33 1 4.7384 -5.1613 -7.4724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603118772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:52 Heat of formation + Delta-G solvation = -169.150609 kcal Electronic energy + Delta-G solvation = -20272.291371 eV Core-core repulsion = 16650.641779 eV Total energy + Delta-G solvation = -3621.649592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.79632 -41.35257 -41.04090 -37.90950 -37.31536 -35.33284 -35.17877 -34.26832 -31.79507 -30.67954 -27.49155 -26.90979 -24.61965 -23.10484 -22.69402 -21.78347 -20.65671 -19.56694 -19.03261 -18.78921 -18.53360 -17.75770 -17.36180 -16.84738 -16.56615 -16.39459 -16.33395 -15.03113 -14.86048 -14.35919 -14.24967 -14.18056 -14.06640 -13.77838 -13.37720 -13.24310 -13.01344 -12.82064 -12.77687 -12.39918 -12.19431 -12.17873 -11.83975 -11.61082 -11.55022 -11.13471 -10.98544 -10.59109 -9.41475 -8.28709 -6.45941 -1.00345 0.16069 1.18003 1.26080 1.42246 1.46172 1.54126 1.70723 1.94075 2.04044 2.13233 2.41818 3.01792 3.43043 3.67270 3.96099 3.99279 4.06448 4.36232 4.45171 4.53003 4.63145 4.78135 4.80668 4.86353 5.02712 5.15943 5.21387 5.30782 5.47774 5.62167 5.70474 5.90086 6.05658 6.57974 6.78719 6.91236 7.26048 8.78860 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.002976 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.003380 B = 9406.982362 C =10114.473260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.213 3.787 3 H 0.010 0.990 4 C -0.553 4.553 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.983 3.017 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.264 1.264 12 O -0.353 6.353 13 C 0.479 3.521 14 O -0.546 6.546 15 C -0.165 4.165 16 C 0.021 3.979 17 C 0.029 3.971 18 C -0.159 4.159 19 C -0.097 4.097 20 C -0.080 4.080 21 C 0.578 3.422 22 O -0.515 6.515 23 O -0.503 6.503 24 O -0.156 6.156 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.026 0.974 28 H 0.271 0.729 29 H 0.154 0.846 30 H 0.182 0.818 31 H 0.204 0.796 32 H 0.193 0.807 33 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 -5.178 -20.891 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.159 3.841 3 H 0.028 0.972 4 C -0.590 4.590 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.806 3.194 9 H -0.193 1.193 10 H -0.201 1.201 11 H -0.189 1.189 12 O -0.269 6.269 13 C 0.327 3.673 14 O -0.439 6.439 15 C -0.184 4.184 16 C 0.003 3.997 17 C -0.023 4.023 18 C -0.177 4.177 19 C -0.116 4.116 20 C -0.131 4.131 21 C 0.423 3.577 22 O -0.407 6.407 23 O -0.317 6.317 24 O -0.052 6.052 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.199 0.801 31 H 0.221 0.779 32 H 0.210 0.790 33 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 5.971 -4.652 -20.592 21.939 hybrid contribution 0.201 -0.624 0.726 0.978 sum 6.172 -5.276 -19.866 21.461 Atomic orbital electron populations 1.22025 0.96816 1.00388 1.00982 1.19988 0.92160 0.92439 0.79473 0.97216 1.21302 1.33608 1.14022 0.90072 0.91500 1.25833 0.94660 0.95661 1.02137 1.70004 1.36433 1.23601 1.25319 0.85231 0.78807 0.78611 0.76750 1.19298 1.20130 1.18900 1.86179 1.76086 1.43331 1.21297 1.21802 0.74656 0.85156 0.85655 1.90795 1.50364 1.17404 1.85361 1.22433 1.04006 1.02318 0.89621 1.21790 0.91076 1.00404 0.86473 1.21361 1.03679 0.80674 0.96545 1.22719 1.02257 1.02913 0.89859 1.22524 0.97952 0.88844 1.02271 1.21431 1.12845 0.94662 0.84183 1.18846 0.73540 0.82747 0.82566 1.90991 1.45685 1.86126 1.17886 1.84651 1.80139 1.19968 1.46992 1.84155 1.63864 1.27391 1.29746 0.93672 0.90040 0.95524 0.91932 0.82818 0.80050 0.77882 0.78974 0.69521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.49 9.31 71.98 0.67 -6.82 16 2 C 0.21 11.83 2.51 29.85 0.07 11.91 16 3 H 0.01 0.62 7.11 -2.38 -0.02 0.60 16 4 C -0.55 -31.72 8.88 25.60 0.23 -31.49 16 5 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -52.68 11.32 21.45 0.24 -52.44 16 8 Si 0.98 42.93 29.54 68.60 2.03 44.96 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 O -0.35 -17.30 9.75 -58.45 -0.57 -17.87 16 13 C 0.48 20.01 7.83 69.89 0.55 20.56 16 14 O -0.55 -25.22 15.47 19.43 0.30 -24.92 16 15 C -0.16 -4.89 9.80 23.67 0.23 -4.66 16 16 C 0.02 0.46 9.64 23.70 0.23 0.69 16 17 C 0.03 0.57 7.02 24.35 0.17 0.74 16 18 C -0.16 -2.15 10.88 22.61 0.25 -1.91 16 19 C -0.10 -1.40 10.64 22.54 0.24 -1.16 16 20 C -0.08 -1.56 7.21 24.43 0.18 -1.38 16 21 C 0.58 10.74 8.32 70.08 0.58 11.32 16 22 O -0.52 -11.15 17.65 19.58 0.35 -10.80 16 23 O -0.50 -7.30 13.44 -56.29 -0.76 -8.06 16 24 O -0.16 -3.49 10.29 -8.79 -0.09 -3.58 16 25 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.08 4.52 6.07 -2.39 -0.01 4.50 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.15 4.17 7.78 -2.91 -0.02 4.14 16 30 H 0.18 3.62 7.52 -2.91 -0.02 3.60 16 31 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.44 1.63 9.11 -74.06 -0.67 0.96 16 Total: -1.00 -73.40 312.26 5.83 -67.57 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.49 Total: 5.94 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 3.84 Total: -0.80 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.24 Total: -52.44 kcal Atomic # 8 Polarization: -64.45 SS G_CDS: -0.77 Total: -65.23 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -73.40 5.83 -67.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.581 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds