Wall clock time and date at job start Tue Mar 31 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 C 1.50698 * 109.47399 * 239.99842 * 2 1 3 5 5 N 1.29852 * 125.53449 * 59.69768 * 4 2 1 6 6 N 1.26260 * 117.79974 * 179.75491 * 5 4 2 7 7 C 1.30855 * 116.21784 * 0.54423 * 6 5 4 8 8 C 1.47142 * 126.18746 * 179.71593 * 7 6 5 9 9 O 1.21664 * 119.99678 * 175.25844 * 8 7 6 10 10 N 1.34767 * 120.00052 * 355.26421 * 8 7 6 11 11 C 1.36784 * 120.00205 * 5.34740 * 10 8 7 12 12 H 1.08001 * 119.99996 * 34.61738 * 11 10 8 13 13 C 1.39094 * 120.00062 * 214.61626 * 11 10 8 14 14 N 1.31340 * 119.99873 * 5.52638 * 13 11 10 15 15 Si 1.86792 * 120.00074 * 185.53384 * 13 11 10 16 16 H 1.48494 * 109.47754 * 89.99689 * 15 13 11 17 17 H 1.48503 * 109.46961 * 210.00041 * 15 13 11 18 18 H 1.48509 * 109.46980 * 329.99496 * 15 13 11 19 19 C 1.46500 * 120.00180 * 185.34719 * 10 8 7 20 20 C 1.47203 * 109.47244 * 83.33456 * 19 10 8 21 21 N 8.71786 * 96.35939 * 225.68137 * 2 1 3 22 22 S 1.71265 * 125.53984 * 239.99785 * 4 2 1 23 23 H 1.09007 * 109.47163 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47722 * 299.99565 * 1 2 3 25 25 H 1.09002 * 109.47525 * 60.00315 * 1 2 3 26 26 H 1.09003 * 109.47008 * 119.99633 * 2 1 3 27 27 H 1.09005 * 109.46751 * 59.99795 * 3 2 1 28 28 H 1.09000 * 109.47306 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47134 * 300.00428 * 3 2 1 30 30 H 0.96994 * 119.99881 * 180.02562 * 14 13 11 31 31 H 1.08995 * 109.47644 * 203.33592 * 19 10 8 32 32 H 1.09003 * 109.46769 * 323.33683 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7813 -0.3650 -2.4567 6 7 2.2831 -1.0648 -3.3801 7 6 3.0064 -2.0877 -3.0023 8 6 3.6846 -3.0468 -3.8884 9 8 4.4012 -3.9094 -3.4164 10 7 3.5122 -2.9696 -5.2228 11 6 2.7965 -1.9358 -5.7613 12 1 2.8404 -0.9557 -5.3098 13 6 2.0122 -2.1468 -6.8905 14 7 1.8722 -3.3593 -7.3756 15 14 1.1582 -0.7058 -7.7171 16 1 2.0528 -0.1272 -8.7515 17 1 -0.0981 -1.1747 -8.3552 18 1 0.8407 0.3302 -6.7015 19 6 4.0914 -3.9930 -6.0966 20 6 3.1907 -5.1558 -6.1544 21 7 2.4956 -6.0532 -6.1989 22 16 3.0212 -2.1087 -1.2386 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9563 0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.3255 -3.5064 -8.1632 31 1 4.2214 -3.5841 -7.0986 32 1 5.0592 -4.3023 -5.7020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611113995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:23 Heat of formation + Delta-G solvation = 45.774867 kcal Electronic energy + Delta-G solvation = -19339.907966 eV Core-core repulsion = 16234.916615 eV Total energy + Delta-G solvation = -3104.991351 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11914 -40.56836 -37.54905 -36.79375 -36.36531 -33.71316 -32.03615 -29.43981 -28.04325 -27.95996 -26.64027 -24.13998 -22.32230 -20.74207 -20.20414 -19.45668 -18.36262 -17.58393 -16.70654 -16.59394 -16.48420 -16.01152 -15.46876 -15.14117 -14.86447 -14.63505 -14.30813 -14.01637 -13.79268 -13.47008 -13.17750 -13.00099 -12.90012 -12.81192 -12.66879 -12.21068 -12.18867 -12.11479 -12.06763 -11.52339 -11.33760 -10.92514 -10.76151 -10.67560 -10.64931 -9.96720 -8.51166 -6.15283 -0.87585 -0.15267 0.38440 1.20060 1.46952 1.50928 1.60115 1.82671 2.16658 2.27098 2.34164 2.75707 2.97988 3.21685 3.57339 3.70044 3.87118 4.12389 4.17962 4.26626 4.57949 4.64649 4.73712 4.82896 4.92015 4.95786 5.08914 5.35103 5.40099 5.45820 5.54823 6.31897 6.88975 6.99721 7.12307 7.55091 7.64156 8.51165 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.006602 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.035632 B = 4240.416501 C = 5304.186993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.137 4.137 4 C -0.001 4.001 5 N -0.300 5.300 6 N -0.219 5.219 7 C -0.044 4.044 8 C 0.513 3.487 9 O -0.609 6.609 10 N -0.407 5.407 11 C -0.320 4.320 12 H 0.127 0.873 13 C 0.012 3.988 14 N -0.882 5.882 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.289 1.289 18 H -0.267 1.267 19 C 0.230 3.770 20 C 0.266 3.734 21 N -0.509 5.509 22 S 0.199 5.801 23 H 0.050 0.950 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.278 0.722 31 H 0.134 0.866 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 9.616 11.769 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.196 4.196 4 C -0.279 4.279 5 N -0.139 5.139 6 N -0.061 5.061 7 C -0.321 4.321 8 C 0.301 3.699 9 O -0.497 6.497 10 N -0.123 5.123 11 C -0.451 4.451 12 H 0.144 0.856 13 C -0.193 4.193 14 N -0.518 5.518 15 Si 0.812 3.188 16 H -0.181 1.181 17 H -0.215 1.215 18 H -0.191 1.191 19 C 0.104 3.896 20 C -0.051 4.051 21 N -0.190 5.190 22 S 0.445 5.555 23 H 0.069 0.931 24 H 0.118 0.882 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.397 7.917 11.536 13.997 hybrid contribution -0.471 0.549 -1.035 1.263 sum -0.074 8.466 10.501 13.489 Atomic orbital electron populations 1.21837 0.91948 1.02367 1.03646 1.20119 0.97473 0.96619 0.89272 1.21822 1.01243 0.92876 1.03632 1.30137 0.99883 0.98104 0.99753 1.71270 1.20521 1.25170 0.96924 1.72512 1.06638 1.02449 1.24527 1.29429 1.05243 1.00960 0.96514 1.16961 0.85977 0.84622 0.82318 1.90700 1.44198 1.39353 1.75406 1.43607 1.43999 1.21749 1.02994 1.20569 1.22879 0.90843 1.10765 0.85601 1.26265 0.95825 0.99444 0.97755 1.69694 1.37625 1.21424 1.23098 0.84953 0.77520 0.77950 0.78351 1.18116 1.21499 1.19148 1.18896 0.91566 0.81127 0.98014 1.29358 0.92756 0.92457 0.90575 1.80824 1.10628 1.16334 1.11262 1.84257 1.44907 1.24277 1.02039 0.93093 0.88194 0.93149 0.86264 0.88340 0.92487 0.93061 0.91120 0.84835 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.17 71.98 0.66 -1.86 16 2 C -0.01 -0.23 3.36 -11.54 -0.04 -0.27 16 3 C -0.14 -2.30 9.18 71.98 0.66 -1.64 16 4 C 0.00 -0.03 6.04 88.40 0.53 0.51 16 5 N -0.30 -11.48 11.59 -50.61 -0.59 -12.06 16 6 N -0.22 -9.71 8.40 -49.78 -0.42 -10.13 16 7 C -0.04 -1.93 7.33 87.18 0.64 -1.29 16 8 C 0.51 24.46 7.54 86.58 0.65 25.11 16 9 O -0.61 -30.03 16.64 -4.23 -0.07 -30.10 16 10 N -0.41 -19.24 2.56 -649.49 -1.66 -20.90 16 11 C -0.32 -15.42 8.12 84.13 0.68 -14.74 16 12 H 0.13 6.16 5.71 -2.91 -0.02 6.14 16 13 C 0.01 0.59 5.16 84.97 0.44 1.03 16 14 N -0.88 -43.77 9.38 21.69 0.20 -43.56 16 15 Si 0.99 39.36 29.56 68.60 2.03 41.39 16 16 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 17 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 19 C 0.23 9.72 5.10 84.57 0.43 10.15 16 20 C 0.27 12.76 13.07 89.44 1.17 13.93 16 21 N -0.51 -26.24 18.54 20.01 0.37 -25.87 16 22 S 0.20 6.48 23.12 -56.49 -1.31 5.17 16 23 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.13 5.30 7.17 -2.39 -0.02 5.28 16 32 H 0.12 4.46 7.56 -2.39 -0.02 4.44 16 Total: -1.00 -64.29 300.91 5.55 -58.74 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.16 Total: 6.40 kcal Atomic # 6 Polarization: 25.10 SS G_CDS: 5.83 Total: 30.93 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -2.09 Total: -112.53 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.07 Total: -30.10 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.31 Total: 5.17 kcal Total: -64.29 5.55 -58.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.516 kcal (2) G-P(sol) polarization free energy of solvation -64.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds