Wall clock time and date at job start Tue Mar 31 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99555 * 2 1 4 4 C 1.53002 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46918 * 64.99529 * 4 3 2 6 6 C 1.36879 * 120.00373 * 269.99962 * 5 4 3 7 7 H 1.08002 * 120.00026 * 135.65744 * 6 5 4 8 8 C 1.39003 * 119.99950 * 315.66494 * 6 5 4 9 9 N 1.31395 * 120.00113 * 346.71425 * 8 6 5 10 10 Si 1.86800 * 120.00168 * 166.72052 * 8 6 5 11 11 H 1.48512 * 109.46925 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47316 * 119.99623 * 10 8 6 13 13 H 1.48500 * 109.47380 * 240.00041 * 10 8 6 14 14 C 1.34783 * 119.99490 * 90.00525 * 5 4 3 15 15 O 1.21728 * 120.00363 * 354.32758 * 14 5 4 16 16 C 1.46591 * 119.99727 * 174.33185 * 14 5 4 17 17 C 1.35055 * 125.06752 * 173.53095 * 16 14 5 18 18 C 1.38889 * 113.62089 * 179.97438 * 17 16 14 19 19 C 1.43200 * 122.94733 * 179.97438 * 18 17 16 20 20 N 9.42181 * 119.78575 * 280.06864 * 2 1 3 21 21 C 1.36655 * 114.10277 * 0.02562 * 18 17 16 22 22 S 1.70589 * 110.55737 * 359.72165 * 21 18 17 23 23 H 1.08994 * 109.47646 * 299.99790 * 1 2 3 24 24 H 1.08996 * 109.47515 * 60.00576 * 1 2 3 25 25 H 1.09008 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47417 * 60.00035 * 3 2 1 27 27 H 1.08998 * 109.47106 * 299.99419 * 3 2 1 28 28 H 1.09004 * 109.46988 * 305.00156 * 4 3 2 29 29 H 1.09000 * 109.47290 * 185.00085 * 4 3 2 30 30 H 0.96998 * 119.99914 * 185.01539 * 9 8 6 31 31 H 1.07992 * 123.18801 * 0.02562 * 17 16 14 32 32 H 1.07997 * 124.72118 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0978 -0.7968 -1.3343 7 1 3.7224 -1.3202 -2.2013 8 6 4.7039 -1.5052 -0.3033 9 7 5.3879 -0.8666 0.6191 10 14 4.5460 -3.3650 -0.2290 11 1 3.7304 -3.8388 -1.3761 12 1 5.8964 -3.9794 -0.2939 13 1 3.8852 -3.7554 1.0423 14 6 4.2633 1.3330 -2.3200 15 8 4.0577 2.5322 -2.2800 16 6 4.8226 0.7253 -3.5310 17 6 5.0314 1.3718 -4.6983 18 6 5.5731 0.5662 -5.6915 19 6 5.8742 1.0470 -7.0063 20 7 6.1094 1.4296 -8.0511 21 6 5.7925 -0.7258 -5.3042 22 16 5.3281 -0.9509 -3.6783 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.8507 0.5686 0.8427 29 1 3.9783 2.1767 0.0902 30 1 5.8711 -1.3649 1.2966 31 1 4.8000 2.4164 -4.8451 32 1 6.2071 -1.4959 -5.9378 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625825474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:24 Heat of formation + Delta-G solvation = -14.912541 kcal Electronic energy + Delta-G solvation = -19416.488483 eV Core-core repulsion = 16276.572778 eV Total energy + Delta-G solvation = -3139.915705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.97743 -37.73345 -36.94031 -35.45873 -34.81660 -31.93793 -30.25422 -28.63332 -25.95429 -25.38300 -24.60693 -22.93545 -20.73401 -19.21261 -18.15212 -16.85332 -16.37208 -15.76793 -15.67569 -15.13853 -14.63077 -14.48469 -14.35204 -13.89996 -13.44872 -13.29445 -12.98896 -12.76002 -12.22693 -11.96053 -11.92207 -11.77012 -11.63923 -11.37352 -11.22942 -11.11754 -11.00833 -10.49898 -10.31990 -10.10389 -9.29178 -9.07323 -8.80595 -8.30061 -7.91271 -7.64572 -6.68180 -4.44437 1.10254 2.20393 2.24354 2.60903 2.99327 3.08059 3.09938 3.12311 3.78882 3.86615 4.20990 4.34458 4.46235 4.66360 4.85985 5.38736 5.60464 5.67544 5.82070 5.88204 5.93761 6.00250 6.11552 6.19136 6.37467 6.49910 6.71111 6.74147 7.00377 7.17182 7.61965 7.83458 7.84152 8.03659 8.74440 9.20460 9.63583 10.31424 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.006916 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.143521 B = 4047.722255 C = 4977.940023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.118 3.882 5 N -0.423 5.423 6 C -0.325 4.325 7 H 0.098 0.902 8 C 0.067 3.933 9 N -0.839 5.839 10 Si 0.909 3.091 11 H -0.258 1.258 12 H -0.274 1.274 13 H -0.273 1.273 14 C 0.535 3.465 15 O -0.595 6.595 16 C -0.219 4.219 17 C -0.069 4.069 18 C -0.075 4.075 19 C 0.288 3.712 20 N -0.454 5.454 21 C -0.279 4.279 22 S 0.354 5.646 23 H 0.030 0.970 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.278 0.722 31 H 0.146 0.854 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -3.875 0.329 5.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.140 5.140 6 C -0.461 4.461 7 H 0.115 0.885 8 C -0.145 4.145 9 N -0.472 5.472 10 Si 0.734 3.266 11 H -0.181 1.181 12 H -0.200 1.200 13 H -0.198 1.198 14 C 0.324 3.676 15 O -0.482 6.482 16 C -0.340 4.340 17 C -0.101 4.101 18 C -0.093 4.093 19 C -0.028 4.028 20 N -0.131 5.131 21 C -0.421 4.421 22 S 0.631 5.369 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.906 -4.152 -0.094 5.069 hybrid contribution -0.357 0.438 -0.555 0.792 sum -3.263 -3.714 -0.649 4.987 Atomic orbital electron populations 1.22648 0.83302 1.01792 0.98903 1.88120 1.17461 1.27617 1.95064 1.23015 0.96232 0.84463 0.98898 1.21513 0.89579 0.99137 0.90296 1.43155 1.55598 1.05942 1.09339 1.19327 1.39134 0.81296 1.06294 0.88481 1.25524 0.93177 1.00705 0.95053 1.69761 1.25545 1.37233 1.14622 0.86114 0.78811 0.81959 0.79744 1.18140 1.19968 1.19812 1.17315 0.81197 0.85721 0.83321 1.90676 1.59374 1.14601 1.83575 1.24218 1.11924 0.98922 0.98941 1.19977 0.99097 1.00620 0.90412 1.15044 1.11967 0.93873 0.88390 1.25534 0.92339 0.92579 0.92328 1.81211 1.11115 1.08862 1.11889 1.27415 1.06335 0.99133 1.09216 1.84769 1.48636 1.06233 0.97250 0.95147 0.94922 0.90375 0.94112 0.93888 0.86950 0.90709 0.91096 0.83640 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.08 10.18 -35.23 -0.36 -7.44 16 3 C 0.05 0.98 6.28 37.16 0.23 1.22 16 4 C 0.12 2.55 5.37 -4.04 -0.02 2.53 16 5 N -0.42 -9.66 2.45 -116.32 -0.28 -9.95 16 6 C -0.33 -7.17 6.13 -15.01 -0.09 -7.26 16 7 H 0.10 2.07 5.79 -38.05 -0.22 1.85 16 8 C 0.07 1.48 5.10 -17.45 -0.09 1.39 16 9 N -0.84 -19.34 11.46 55.50 0.64 -18.71 16 10 Si 0.91 17.10 29.58 -169.99 -5.03 12.07 16 11 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 12 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 14 C 0.54 12.38 7.58 -12.89 -0.10 12.28 16 15 O -0.60 -14.93 16.45 5.16 0.08 -14.85 16 16 C -0.22 -4.39 6.20 -37.35 -0.23 -4.62 16 17 C -0.07 -1.26 9.73 -40.47 -0.39 -1.66 16 18 C -0.07 -1.24 5.67 -108.30 -0.61 -1.86 16 19 C 0.29 4.89 15.56 -22.43 -0.35 4.54 16 20 N -0.45 -8.24 18.55 41.89 0.78 -7.47 16 21 C -0.28 -4.20 10.82 30.16 0.33 -3.87 16 22 S 0.35 6.02 18.47 -107.50 -1.99 4.03 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.11 2.56 5.72 -51.93 -0.30 2.27 16 29 H 0.07 1.62 7.51 -51.93 -0.39 1.23 16 30 H 0.28 6.02 8.32 -40.82 -0.34 5.68 16 31 H 0.15 2.64 8.03 -52.49 -0.42 2.22 16 32 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -26.46 302.03 -4.83 -31.28 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.00 Total: 2.22 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.22 Total: 4.25 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 1.13 Total: -36.12 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.27 Total: -22.29 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -1.99 Total: 4.03 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.46 -4.83 -31.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625825474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.368 kcal (2) G-P(sol) polarization free energy of solvation -26.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds