Wall clock time and date at job start Tue Mar 31 2020 01:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99555 * 2 1 4 4 C 1.53002 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46918 * 64.99529 * 4 3 2 6 6 C 1.36879 * 120.00373 * 269.99962 * 5 4 3 7 7 H 1.08002 * 120.00026 * 135.65744 * 6 5 4 8 8 C 1.39003 * 119.99950 * 315.66494 * 6 5 4 9 9 N 1.31395 * 120.00113 * 346.71425 * 8 6 5 10 10 Si 1.86800 * 120.00168 * 166.72052 * 8 6 5 11 11 H 1.48512 * 109.46925 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47316 * 119.99623 * 10 8 6 13 13 H 1.48500 * 109.47380 * 240.00041 * 10 8 6 14 14 C 1.34783 * 119.99490 * 90.00525 * 5 4 3 15 15 O 1.21728 * 120.00363 * 354.32758 * 14 5 4 16 16 C 1.46591 * 119.99727 * 174.33185 * 14 5 4 17 17 C 1.35055 * 125.06752 * 173.53095 * 16 14 5 18 18 C 1.38889 * 113.62089 * 179.97438 * 17 16 14 19 19 C 1.43200 * 122.94733 * 179.97438 * 18 17 16 20 20 N 9.42181 * 119.78575 * 280.06864 * 2 1 3 21 21 C 1.36655 * 114.10277 * 0.02562 * 18 17 16 22 22 S 1.70589 * 110.55737 * 359.72165 * 21 18 17 23 23 H 1.08994 * 109.47646 * 299.99790 * 1 2 3 24 24 H 1.08996 * 109.47515 * 60.00576 * 1 2 3 25 25 H 1.09008 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47417 * 60.00035 * 3 2 1 27 27 H 1.08998 * 109.47106 * 299.99419 * 3 2 1 28 28 H 1.09004 * 109.46988 * 305.00156 * 4 3 2 29 29 H 1.09000 * 109.47290 * 185.00085 * 4 3 2 30 30 H 0.96998 * 119.99914 * 185.01539 * 9 8 6 31 31 H 1.07992 * 123.18801 * 0.02562 * 17 16 14 32 32 H 1.07997 * 124.72118 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0978 -0.7968 -1.3343 7 1 3.7224 -1.3202 -2.2013 8 6 4.7039 -1.5052 -0.3033 9 7 5.3879 -0.8666 0.6191 10 14 4.5460 -3.3650 -0.2290 11 1 3.7304 -3.8388 -1.3761 12 1 5.8964 -3.9794 -0.2939 13 1 3.8852 -3.7554 1.0423 14 6 4.2633 1.3330 -2.3200 15 8 4.0577 2.5322 -2.2800 16 6 4.8226 0.7253 -3.5310 17 6 5.0314 1.3718 -4.6983 18 6 5.5731 0.5662 -5.6915 19 6 5.8742 1.0470 -7.0063 20 7 6.1094 1.4296 -8.0511 21 6 5.7925 -0.7258 -5.3042 22 16 5.3281 -0.9509 -3.6783 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.8507 0.5686 0.8427 29 1 3.9783 2.1767 0.0902 30 1 5.8711 -1.3649 1.2966 31 1 4.8000 2.4164 -4.8451 32 1 6.2071 -1.4959 -5.9378 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625825474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:23 Heat of formation + Delta-G solvation = -30.157178 kcal Electronic energy + Delta-G solvation = -19417.149540 eV Core-core repulsion = 16276.572778 eV Total energy + Delta-G solvation = -3140.576763 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64481 -39.17085 -38.41104 -36.91428 -36.48450 -33.62049 -31.79857 -30.10807 -27.32170 -26.91265 -26.06529 -24.47602 -22.31802 -20.84502 -19.62593 -18.45213 -17.81137 -17.24957 -17.19984 -16.65803 -16.19105 -16.01762 -15.87047 -15.33755 -14.90160 -14.79842 -14.38337 -14.24509 -13.67071 -13.47343 -13.34484 -13.18941 -13.14891 -12.91410 -12.81749 -12.56217 -12.48966 -11.95632 -11.81638 -11.57144 -10.92823 -10.59546 -10.43405 -9.78586 -9.39093 -9.23971 -8.32908 -6.15929 -0.27809 0.75340 0.81818 1.21746 1.52476 1.58307 1.68280 1.70413 2.26045 2.36461 2.63610 2.82429 3.03626 3.14250 3.30956 4.09719 4.28254 4.30875 4.49517 4.54642 4.57710 4.63909 4.64818 4.81783 4.90114 4.97144 5.26288 5.27287 5.31986 5.46814 5.96498 6.35304 6.44418 6.48507 7.06509 7.49233 7.93370 8.68745 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.006916 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.143521 B = 4047.722255 C = 4977.940023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.063 3.937 4 C 0.115 3.885 5 N -0.429 5.429 6 C -0.338 4.338 7 H 0.105 0.895 8 C 0.037 3.963 9 N -0.872 5.872 10 Si 0.957 3.043 11 H -0.243 1.243 12 H -0.266 1.266 13 H -0.282 1.282 14 C 0.521 3.479 15 O -0.631 6.631 16 C -0.261 4.261 17 C -0.058 4.058 18 C -0.084 4.084 19 C 0.304 3.696 20 N -0.473 5.473 21 C -0.240 4.240 22 S 0.383 5.617 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.280 0.720 31 H 0.140 0.860 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -5.927 -0.790 6.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.015 4.015 4 C -0.008 4.008 5 N -0.145 5.145 6 C -0.472 4.472 7 H 0.122 0.878 8 C -0.171 4.171 9 N -0.507 5.507 10 Si 0.779 3.221 11 H -0.166 1.166 12 H -0.191 1.191 13 H -0.207 1.207 14 C 0.311 3.689 15 O -0.521 6.521 16 C -0.382 4.382 17 C -0.091 4.091 18 C -0.101 4.101 19 C -0.011 4.011 20 N -0.150 5.150 21 C -0.381 4.381 22 S 0.657 5.343 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.046 -6.216 -1.193 7.024 hybrid contribution -0.327 1.080 -0.284 1.163 sum -3.372 -5.137 -1.477 6.320 Atomic orbital electron populations 1.22878 0.80778 1.03374 1.00096 1.88055 1.20258 1.27551 1.95292 1.22802 0.94439 0.84763 0.99452 1.21472 0.91545 0.97999 0.89805 1.43346 1.55294 1.06475 1.09414 1.19548 1.39587 0.80952 1.07090 0.87780 1.26151 0.92577 1.03965 0.94456 1.69847 1.26710 1.38650 1.15444 0.85386 0.79205 0.77806 0.79671 1.16592 1.19078 1.20729 1.17767 0.81112 0.85536 0.84445 1.90623 1.60979 1.16003 1.84503 1.24057 1.14423 1.01301 0.98422 1.20033 0.98072 1.00622 0.90364 1.14893 1.12961 0.94297 0.87915 1.25379 0.91696 0.92065 0.91980 1.81241 1.11942 1.09305 1.12541 1.27622 1.03216 0.99161 1.08145 1.84492 1.48180 1.03821 0.97760 0.93160 0.94454 0.88654 0.91546 0.95151 0.88287 0.92030 0.90984 0.84234 0.78314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.39 -15.09 10.18 -148.98 -1.52 -16.60 16 3 C 0.06 2.43 6.28 71.98 0.45 2.88 16 4 C 0.12 5.15 5.37 86.38 0.46 5.62 16 5 N -0.43 -20.01 2.45 -640.14 -1.57 -21.58 16 6 C -0.34 -14.86 6.13 84.09 0.52 -14.34 16 7 H 0.11 4.32 5.79 -12.09 -0.07 4.25 16 8 C 0.04 1.61 5.10 84.94 0.43 2.04 16 9 N -0.87 -40.73 11.46 21.67 0.25 -40.49 16 10 Si 0.96 33.76 29.58 68.60 2.03 35.79 16 11 H -0.24 -7.92 7.11 99.48 0.71 -7.21 16 12 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 13 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 14 C 0.52 24.72 7.58 86.42 0.66 25.37 16 15 O -0.63 -32.97 16.45 -4.44 -0.07 -33.04 16 16 C -0.26 -10.41 6.20 23.72 0.15 -10.26 16 17 C -0.06 -2.07 9.73 21.69 0.21 -1.86 16 18 C -0.08 -2.56 5.67 -22.25 -0.13 -2.69 16 19 C 0.30 9.59 15.56 88.32 1.37 10.96 16 20 N -0.47 -16.21 18.55 19.02 0.35 -15.86 16 21 C -0.24 -6.24 10.82 67.45 0.73 -5.51 16 22 S 0.38 12.10 18.47 -56.49 -1.04 11.05 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 4.68 5.72 -2.38 -0.01 4.67 16 29 H 0.06 2.82 7.51 -2.39 -0.02 2.80 16 30 H 0.28 12.26 8.32 -92.71 -0.77 11.48 16 31 H 0.14 5.11 8.03 -2.91 -0.02 5.08 16 32 H 0.20 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -57.59 302.03 5.64 -51.95 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.10 Total: 14.61 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.10 Total: 14.16 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -0.97 Total: -77.93 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -1.59 Total: -49.64 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal Atomic # 16 Polarization: 12.10 SS G_CDS: -1.04 Total: 11.05 kcal Total: -57.59 5.64 -51.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625825474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.796 kcal (2) G-P(sol) polarization free energy of solvation -57.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds