Wall clock time and date at job start Tue Mar 31 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21308 * 119.99585 * 2 1 4 4 N 1.34773 * 120.00099 * 180.02562 * 2 1 3 5 5 C 1.40077 * 119.99907 * 175.02382 * 4 2 1 6 6 C 1.36178 * 119.99671 * 174.22226 * 5 4 2 7 7 C 1.41526 * 119.99916 * 183.42543 * 6 5 4 8 8 C 1.36923 * 125.36696 * 185.44931 * 7 6 5 9 9 C 1.37363 * 114.36544 * 179.97438 * 8 7 6 10 10 C 1.34003 * 115.25350 * 359.97438 * 9 8 7 11 11 S 1.75816 * 110.02323 * 359.75821 * 10 9 8 12 12 C 1.46206 * 120.00038 * 354.48678 * 5 4 2 13 13 O 1.21832 * 119.99751 * 87.65700 * 12 5 4 14 14 N 1.34771 * 120.00504 * 267.65550 * 12 5 4 15 15 C 1.36753 * 120.00306 * 184.94586 * 14 12 5 16 16 H 1.07996 * 120.00268 * 5.02044 * 15 14 12 17 17 C 1.39031 * 119.99839 * 185.01978 * 15 14 12 18 18 N 1.31390 * 119.99764 * 184.81721 * 17 15 14 19 19 Si 1.86792 * 120.00269 * 4.81982 * 17 15 14 20 20 H 1.48497 * 109.47102 * 94.54191 * 19 17 15 21 21 H 1.48506 * 109.47257 * 214.53986 * 19 17 15 22 22 H 1.48500 * 109.47159 * 334.54222 * 19 17 15 23 23 H 1.09009 * 109.46799 * 239.99639 * 1 2 3 24 24 H 1.08998 * 109.47439 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47790 * 120.00057 * 1 2 3 26 26 H 0.97001 * 120.00265 * 355.01066 * 4 2 1 27 27 H 1.08002 * 120.00402 * 3.41476 * 6 5 4 28 28 H 1.08006 * 122.81118 * 0.02562 * 8 7 6 29 29 H 1.07995 * 122.36752 * 179.97438 * 9 8 7 30 30 H 1.07995 * 124.98999 * 179.97438 * 10 9 8 31 31 H 0.97006 * 120.00041 * 4.94820 * 14 12 5 32 32 H 0.96995 * 120.00134 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5776 -1.1693 -0.1058 6 6 4.2674 -2.3376 0.0118 7 6 5.6823 -2.3305 -0.0220 8 6 6.4807 -3.4428 -0.0202 9 6 7.8272 -3.1740 -0.0577 10 6 8.1499 -1.8738 -0.0907 11 16 6.6918 -0.8913 -0.0817 12 6 4.2954 0.0834 -0.3360 13 8 4.6356 0.7730 0.6090 14 7 4.5807 0.4755 -1.5934 15 6 5.3389 1.5936 -1.8057 16 1 5.7767 2.1162 -0.9682 17 6 5.5462 2.0575 -3.0999 18 7 6.3507 3.0743 -3.3122 19 14 4.6809 1.2352 -4.5367 20 1 3.4264 1.9680 -4.8440 21 1 5.5695 1.2545 -5.7264 22 1 4.3589 -0.1704 -4.1819 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3634 1.0276 0.0005 25 1 -0.3634 -0.5138 -0.8899 26 1 1.6986 -2.0057 0.0722 27 1 3.7348 -3.2696 0.1309 28 1 6.0848 -4.4473 0.0076 29 1 8.5729 -3.9551 -0.0605 30 1 9.1574 -1.4863 -0.1220 31 1 4.2481 -0.0355 -2.3480 32 1 6.4951 3.3982 -4.2150 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627705784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:50 Heat of formation + Delta-G solvation = -6.540747 kcal Electronic energy + Delta-G solvation = -19795.747601 eV Core-core repulsion = 16656.194924 eV Total energy + Delta-G solvation = -3139.552677 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17855 -38.10409 -37.21428 -35.27210 -33.94362 -32.35325 -31.56307 -29.95887 -27.39515 -25.37333 -23.62347 -22.00575 -21.02835 -19.31471 -18.79125 -18.18405 -17.33476 -16.45654 -16.00965 -15.37331 -15.02011 -14.87427 -14.38304 -13.76406 -13.53197 -13.18061 -12.85021 -12.80120 -12.59126 -12.40683 -12.35535 -12.10768 -12.05964 -11.32822 -11.16541 -11.08820 -10.54112 -10.02092 -9.82023 -9.67571 -9.36780 -9.20245 -8.63963 -8.25188 -7.63751 -7.03492 -6.30966 -3.77201 0.90416 2.29976 2.36622 2.69259 2.96499 2.96994 3.04951 3.12042 3.16990 3.49276 3.88213 4.11589 4.46327 4.86910 5.16616 5.26899 5.28487 5.48438 5.58478 5.62647 5.72288 5.82952 6.02811 6.06852 6.14922 6.56519 6.75258 6.88300 7.04589 7.42959 7.56982 8.12145 8.26887 8.57961 8.93929 9.41154 9.77313 10.81466 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.010430 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.454386 B = 2683.918977 C = 4298.734441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.487 3.513 3 O -0.472 6.472 4 N -0.662 5.662 5 C 0.109 3.891 6 C -0.133 4.133 7 C -0.170 4.170 8 C -0.150 4.150 9 C -0.146 4.146 10 C -0.274 4.274 11 S 0.262 5.738 12 C 0.488 3.512 13 O -0.539 6.539 14 N -0.563 5.563 15 C -0.288 4.288 16 H 0.123 0.877 17 C 0.046 3.954 18 N -0.873 5.873 19 Si 0.876 3.124 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.271 1.271 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.408 0.592 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.371 0.629 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 -14.037 2.961 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.273 3.727 3 O -0.342 6.342 4 N -0.307 5.307 5 C 0.006 3.994 6 C -0.159 4.159 7 C -0.289 4.289 8 C -0.182 4.182 9 C -0.176 4.176 10 C -0.411 4.411 11 S 0.534 5.466 12 C 0.272 3.728 13 O -0.422 6.422 14 N -0.202 5.202 15 C -0.417 4.417 16 H 0.141 0.859 17 C -0.158 4.158 18 N -0.513 5.513 19 Si 0.703 3.297 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.197 1.197 23 H 0.107 0.893 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.243 0.757 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.170 0.830 31 H 0.205 0.795 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.441 -10.965 3.397 13.680 hybrid contribution -0.578 -2.780 -1.229 3.094 sum -8.019 -13.745 2.168 16.060 Atomic orbital electron populations 1.21891 0.90723 1.05974 1.04140 1.21195 0.91036 0.83594 0.76854 1.90992 1.69446 1.30236 1.43544 1.43757 1.04749 1.10120 1.72053 1.20626 0.83333 0.96008 0.99465 1.19636 0.91027 0.95693 1.09556 1.22373 0.96690 0.98442 1.11378 1.20394 0.92654 0.97790 1.07320 1.19740 0.95898 0.95871 1.06102 1.26504 1.05003 0.98801 1.10780 1.86592 0.92618 1.02582 1.64852 1.16667 0.85519 0.85687 0.84910 1.90770 1.56609 1.53426 1.41414 1.42105 1.47423 1.25528 1.05130 1.19315 1.24785 1.02143 0.95473 0.85932 1.25002 0.96949 0.96465 0.97352 1.69604 1.34768 1.24802 1.22130 0.86708 0.80468 0.79359 0.83175 1.19678 1.20043 1.19699 0.89335 0.88533 0.89261 0.75667 0.85027 0.85287 0.85769 0.82987 0.79497 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.32 36.00 0.37 -1.22 16 2 C 0.49 7.79 7.87 -10.99 -0.09 7.71 16 3 O -0.47 -10.76 14.23 -14.31 -0.20 -10.96 16 4 N -0.66 -9.47 5.41 -8.56 -0.05 -9.51 16 5 C 0.11 2.04 6.48 -81.63 -0.53 1.51 16 6 C -0.13 -2.18 9.75 -39.07 -0.38 -2.56 16 7 C -0.17 -3.10 6.14 -38.81 -0.24 -3.34 16 8 C -0.15 -2.37 10.16 -40.38 -0.41 -2.78 16 9 C -0.15 -2.31 10.14 -41.39 -0.42 -2.73 16 10 C -0.27 -4.83 11.22 29.24 0.33 -4.50 16 11 S 0.26 5.56 17.41 -107.50 -1.87 3.69 16 12 C 0.49 11.74 1.49 -13.06 -0.02 11.72 16 13 O -0.54 -15.08 14.68 -14.77 -0.22 -15.30 16 14 N -0.56 -14.02 4.44 -12.32 -0.05 -14.08 16 15 C -0.29 -8.14 9.56 -15.06 -0.14 -8.29 16 16 H 0.12 3.93 7.41 -52.49 -0.39 3.54 16 17 C 0.05 1.27 5.50 -17.45 -0.10 1.17 16 18 N -0.87 -25.40 13.96 55.50 0.77 -24.63 16 19 Si 0.88 20.04 28.01 -169.99 -4.76 15.27 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -5.72 6.15 56.52 0.35 -5.37 16 23 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.10 0.97 8.12 -51.93 -0.42 0.55 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.41 3.66 8.71 -40.82 -0.36 3.30 16 27 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.15 2.37 8.06 -52.49 -0.42 1.94 16 31 H 0.37 8.58 5.61 -40.82 -0.23 8.35 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -36.04 293.81 -6.70 -42.73 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.12 Total: 11.66 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.62 Total: -3.31 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.67 Total: -48.22 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.42 Total: -26.26 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.76 Total: 15.27 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.87 Total: 3.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -36.04 -6.70 -42.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627705784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.192 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds