Wall clock time and date at job start Tue Mar 31 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21308 * 119.99585 * 2 1 4 4 N 1.34773 * 120.00099 * 180.02562 * 2 1 3 5 5 C 1.40077 * 119.99907 * 175.02382 * 4 2 1 6 6 C 1.36178 * 119.99671 * 174.22226 * 5 4 2 7 7 C 1.41526 * 119.99916 * 183.42543 * 6 5 4 8 8 C 1.36923 * 125.36696 * 185.44931 * 7 6 5 9 9 C 1.37363 * 114.36544 * 179.97438 * 8 7 6 10 10 C 1.34003 * 115.25350 * 359.97438 * 9 8 7 11 11 S 1.75816 * 110.02323 * 359.75821 * 10 9 8 12 12 C 1.46206 * 120.00038 * 354.48678 * 5 4 2 13 13 O 1.21832 * 119.99751 * 87.65700 * 12 5 4 14 14 N 1.34771 * 120.00504 * 267.65550 * 12 5 4 15 15 C 1.36753 * 120.00306 * 184.94586 * 14 12 5 16 16 H 1.07996 * 120.00268 * 5.02044 * 15 14 12 17 17 C 1.39031 * 119.99839 * 185.01978 * 15 14 12 18 18 N 1.31390 * 119.99764 * 184.81721 * 17 15 14 19 19 Si 1.86792 * 120.00269 * 4.81982 * 17 15 14 20 20 H 1.48497 * 109.47102 * 94.54191 * 19 17 15 21 21 H 1.48506 * 109.47257 * 214.53986 * 19 17 15 22 22 H 1.48500 * 109.47159 * 334.54222 * 19 17 15 23 23 H 1.09009 * 109.46799 * 239.99639 * 1 2 3 24 24 H 1.08998 * 109.47439 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47790 * 120.00057 * 1 2 3 26 26 H 0.97001 * 120.00265 * 355.01066 * 4 2 1 27 27 H 1.08002 * 120.00402 * 3.41476 * 6 5 4 28 28 H 1.08006 * 122.81118 * 0.02562 * 8 7 6 29 29 H 1.07995 * 122.36752 * 179.97438 * 9 8 7 30 30 H 1.07995 * 124.98999 * 179.97438 * 10 9 8 31 31 H 0.97006 * 120.00041 * 4.94820 * 14 12 5 32 32 H 0.96995 * 120.00134 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5776 -1.1693 -0.1058 6 6 4.2674 -2.3376 0.0118 7 6 5.6823 -2.3305 -0.0220 8 6 6.4807 -3.4428 -0.0202 9 6 7.8272 -3.1740 -0.0577 10 6 8.1499 -1.8738 -0.0907 11 16 6.6918 -0.8913 -0.0817 12 6 4.2954 0.0834 -0.3360 13 8 4.6356 0.7730 0.6090 14 7 4.5807 0.4755 -1.5934 15 6 5.3389 1.5936 -1.8057 16 1 5.7767 2.1162 -0.9682 17 6 5.5462 2.0575 -3.0999 18 7 6.3507 3.0743 -3.3122 19 14 4.6809 1.2352 -4.5367 20 1 3.4264 1.9680 -4.8440 21 1 5.5695 1.2545 -5.7264 22 1 4.3589 -0.1704 -4.1819 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3634 1.0276 0.0005 25 1 -0.3634 -0.5138 -0.8899 26 1 1.6986 -2.0057 0.0722 27 1 3.7348 -3.2696 0.1309 28 1 6.0848 -4.4473 0.0076 29 1 8.5729 -3.9551 -0.0605 30 1 9.1574 -1.4863 -0.1220 31 1 4.2481 -0.0355 -2.3480 32 1 6.4951 3.3982 -4.2150 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627705784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:50 Heat of formation + Delta-G solvation = -34.681850 kcal Electronic energy + Delta-G solvation = -19796.967891 eV Core-core repulsion = 16656.194924 eV Total energy + Delta-G solvation = -3140.772967 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59826 -39.77816 -38.58645 -36.69034 -35.96524 -33.84881 -33.47518 -30.95331 -28.72391 -27.26014 -25.03428 -23.64555 -22.25688 -21.14231 -20.27137 -19.87039 -18.62122 -18.05234 -17.35263 -17.09499 -16.41332 -16.33498 -15.99043 -15.35902 -15.10492 -14.86264 -14.53357 -14.21520 -14.06267 -13.78923 -13.41866 -13.27377 -13.18501 -13.04280 -12.67043 -12.50013 -12.37377 -12.03123 -11.59682 -11.17287 -10.91063 -10.55503 -10.51716 -10.27239 -9.25745 -8.41591 -8.38143 -5.94879 -0.48260 0.89564 1.00902 1.19736 1.21770 1.33005 1.35051 1.72320 1.75100 2.18036 2.19843 2.30550 2.88612 3.20152 3.82150 4.00694 4.27699 4.30097 4.50578 4.55677 4.67028 4.75336 4.80979 4.87976 5.10908 5.26463 5.45413 5.50593 5.56564 5.80416 5.95438 6.40817 6.55194 6.87413 7.18567 7.35192 7.88831 8.76978 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.010430 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.454386 B = 2683.918977 C = 4298.734441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.477 3.523 3 O -0.558 6.558 4 N -0.637 5.637 5 C 0.067 3.933 6 C -0.096 4.096 7 C -0.184 4.184 8 C -0.118 4.118 9 C -0.136 4.136 10 C -0.266 4.266 11 S 0.111 5.889 12 C 0.508 3.492 13 O -0.592 6.592 14 N -0.569 5.569 15 C -0.295 4.295 16 H 0.059 0.941 17 C -0.012 4.012 18 N -0.929 5.929 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.266 1.266 22 H -0.241 1.241 23 H 0.126 0.874 24 H 0.085 0.915 25 H 0.125 0.875 26 H 0.438 0.562 27 H 0.196 0.804 28 H 0.182 0.818 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.381 0.619 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -19.984 2.184 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.267 3.733 3 O -0.434 6.434 4 N -0.285 5.285 5 C -0.035 4.035 6 C -0.121 4.121 7 C -0.302 4.302 8 C -0.150 4.150 9 C -0.166 4.166 10 C -0.402 4.402 11 S 0.380 5.620 12 C 0.294 3.706 13 O -0.477 6.477 14 N -0.209 5.209 15 C -0.424 4.424 16 H 0.077 0.923 17 C -0.210 4.210 18 N -0.570 5.570 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.190 1.190 22 H -0.165 1.165 23 H 0.144 0.856 24 H 0.104 0.896 25 H 0.143 0.857 26 H 0.279 0.721 27 H 0.213 0.787 28 H 0.199 0.801 29 H 0.185 0.815 30 H 0.181 0.819 31 H 0.216 0.784 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.668 -16.999 2.635 19.732 hybrid contribution 0.290 -1.137 -0.765 1.401 sum -9.378 -18.135 1.869 20.502 Atomic orbital electron populations 1.21926 0.85161 1.06502 1.07531 1.22497 0.93585 0.82658 0.74575 1.90976 1.71366 1.33208 1.47843 1.43531 1.02757 1.11273 1.70978 1.20074 0.85526 0.94011 1.03938 1.20203 0.90098 0.96872 1.04941 1.22603 0.97582 0.96489 1.13569 1.21007 0.92144 0.99025 1.02776 1.20314 0.97219 0.95641 1.03380 1.26578 1.03555 0.98873 1.11224 1.87258 0.98017 1.08078 1.68605 1.17417 0.83212 0.86406 0.83557 1.90715 1.58021 1.55961 1.43032 1.41864 1.47974 1.25002 1.06065 1.18753 1.25899 1.03604 0.94172 0.92326 1.25914 0.97588 0.97180 1.00347 1.69771 1.36988 1.27079 1.23154 0.85521 0.78973 0.79644 0.78433 1.19178 1.19027 1.16477 0.85612 0.89590 0.85688 0.72055 0.78714 0.80122 0.81468 0.81870 0.78404 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.32 71.23 0.74 -1.66 16 2 C 0.48 14.79 7.87 87.66 0.69 15.48 16 3 O -0.56 -26.68 14.23 15.86 0.23 -26.46 16 4 N -0.64 -16.44 5.41 -299.39 -1.62 -18.06 16 5 C 0.07 2.42 6.48 39.41 0.26 2.68 16 6 C -0.10 -2.74 9.75 22.60 0.22 -2.52 16 7 C -0.18 -6.21 6.14 22.77 0.14 -6.07 16 8 C -0.12 -3.06 10.16 21.75 0.22 -2.84 16 9 C -0.14 -3.68 10.14 21.10 0.21 -3.47 16 10 C -0.27 -9.14 11.22 66.85 0.75 -8.39 16 11 S 0.11 4.91 17.41 -56.49 -0.98 3.92 16 12 C 0.51 25.60 1.49 86.31 0.13 25.73 16 13 O -0.59 -36.09 14.68 14.20 0.21 -35.88 16 14 N -0.57 -29.78 4.44 -311.05 -1.38 -31.17 16 15 C -0.29 -18.15 9.56 84.12 0.80 -17.34 16 16 H 0.06 4.27 7.41 -2.91 -0.02 4.25 16 17 C -0.01 -0.68 5.50 84.95 0.47 -0.21 16 18 N -0.93 -57.96 13.96 21.68 0.30 -57.66 16 19 Si 0.95 42.32 28.01 68.60 1.92 44.24 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.24 -9.33 6.15 99.48 0.61 -8.71 16 23 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.44 5.57 8.71 -92.71 -0.81 4.76 16 27 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.16 5.07 8.06 -2.91 -0.02 5.04 16 31 H 0.38 17.81 5.61 -92.70 -0.52 17.29 16 32 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -93.58 293.81 3.05 -90.53 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.25 Total: 29.15 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 4.63 Total: 1.38 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -2.70 Total: -106.89 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: 0.43 Total: -62.34 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.92 Total: 44.24 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -0.98 Total: 3.92 kcal Total: -93.58 3.05 -90.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627705784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.848 kcal (2) G-P(sol) polarization free energy of solvation -93.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds