Wall clock time and date at job start Tue Mar 31 2020 01:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21304 * 120.00502 * 2 1 4 4 N 1.34774 * 119.99760 * 180.02562 * 2 1 3 5 5 C 1.40077 * 120.00420 * 185.10827 * 4 2 1 6 6 C 1.36183 * 120.00046 * 119.43663 * 5 4 2 7 7 C 1.41522 * 119.99839 * 1.39129 * 6 5 4 8 8 C 1.36929 * 125.35991 * 174.66558 * 7 6 5 9 9 C 1.37356 * 114.36345 * 180.02562 * 8 7 6 10 10 C 1.34010 * 115.25522 * 0.02562 * 9 8 7 11 11 S 1.75817 * 110.01873 * 359.73448 * 10 9 8 12 12 C 1.46208 * 119.99486 * 299.44557 * 5 4 2 13 13 O 1.21825 * 119.99477 * 174.72981 * 12 5 4 14 14 N 1.34772 * 120.00312 * 354.73036 * 12 5 4 15 15 C 1.36765 * 119.99837 * 185.07700 * 14 12 5 16 16 H 1.07998 * 120.00090 * 4.98547 * 15 14 12 17 17 C 1.39026 * 119.99569 * 184.98861 * 15 14 12 18 18 N 1.31386 * 119.99725 * 184.72553 * 17 15 14 19 19 Si 1.86798 * 120.00302 * 4.72358 * 17 15 14 20 20 H 1.48493 * 109.47101 * 94.42030 * 19 17 15 21 21 H 1.48507 * 109.47014 * 214.42110 * 19 17 15 22 22 H 1.48499 * 109.46890 * 334.41603 * 19 17 15 23 23 H 1.08995 * 109.46951 * 240.00239 * 1 2 3 24 24 H 1.09005 * 109.46499 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46968 * 119.99910 * 1 2 3 26 26 H 0.97001 * 120.00113 * 5.10816 * 4 2 1 27 27 H 1.07998 * 119.99713 * 181.38462 * 6 5 4 28 28 H 1.07997 * 122.81792 * 0.02833 * 8 7 6 29 29 H 1.08004 * 122.37505 * 180.02562 * 9 8 7 30 30 H 1.07997 * 124.98677 * 179.97438 * 10 9 8 31 31 H 0.97001 * 120.00035 * 5.07796 * 14 12 5 32 32 H 0.96997 * 120.00548 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5774 -1.1698 0.1075 6 6 4.1781 -1.7963 1.1569 7 6 3.3927 -2.4698 2.1225 8 6 3.8817 -3.2194 3.1588 9 6 2.9155 -3.7742 3.9622 10 6 1.6521 -3.4989 3.6104 11 16 1.6349 -2.4712 2.1839 12 6 4.3902 -0.4998 -0.9065 13 8 5.5973 -0.4187 -0.7635 14 7 3.8041 0.0282 -1.9992 15 6 4.5724 0.5625 -2.9965 16 1 5.6488 0.4896 -2.9468 17 6 3.9677 1.1995 -4.0742 18 7 4.6989 1.6306 -5.0771 19 14 2.1157 1.4423 -4.0965 20 1 1.7862 2.7861 -3.5573 21 1 1.6190 1.3334 -5.4918 22 1 1.4698 0.4004 -3.2584 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3632 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6987 -2.0056 -0.0757 27 1 5.2537 -1.7792 1.2522 28 1 4.9384 -3.3624 3.3302 29 1 3.1569 -4.3888 4.8169 30 1 0.7736 -3.8529 4.1293 31 1 2.8373 0.0292 -2.0783 32 1 4.2771 2.0747 -5.8292 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627705785.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:53 Heat of formation + Delta-G solvation = -12.822165 kcal Electronic energy + Delta-G solvation = -19496.767104 eV Core-core repulsion = 16356.942044 eV Total energy + Delta-G solvation = -3139.825060 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22816 -38.10259 -37.65488 -35.53900 -34.14825 -32.15581 -31.75577 -29.91855 -27.86806 -25.67816 -23.99611 -21.71625 -21.34561 -19.34660 -19.16596 -18.48403 -17.72107 -16.88358 -16.19562 -15.45970 -15.29295 -14.95813 -14.36892 -13.91528 -13.66138 -13.43394 -13.12828 -13.08451 -12.77032 -12.65884 -12.54964 -12.29291 -12.09438 -11.74586 -11.30429 -10.98534 -10.66914 -10.39545 -10.15539 -9.88920 -9.68059 -9.57059 -8.57511 -8.52021 -8.29344 -7.65807 -6.53919 -3.88279 0.33848 1.59060 1.95311 2.00737 2.64735 2.89720 2.97941 3.03824 3.09744 3.20480 3.96013 4.14356 4.50187 4.78152 5.03541 5.16463 5.18809 5.20636 5.27732 5.48323 5.59773 5.72429 5.86051 5.95055 6.03621 6.27059 6.39245 6.58563 6.80650 7.31591 7.40795 8.01170 8.18038 8.44217 8.78429 9.25941 9.75080 10.56990 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.005837 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.865502 B = 4796.175300 C = 5612.653207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.501 3.499 3 O -0.504 6.504 4 N -0.685 5.685 5 C 0.099 3.901 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.141 4.141 9 C -0.126 4.126 10 C -0.249 4.249 11 S 0.118 5.882 12 C 0.471 3.529 13 O -0.582 6.582 14 N -0.550 5.550 15 C -0.285 4.285 16 H 0.126 0.874 17 C 0.042 3.958 18 N -0.856 5.856 19 Si 0.888 3.112 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.275 1.275 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.404 0.596 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.373 0.627 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 -10.384 13.162 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.289 3.711 3 O -0.377 6.377 4 N -0.342 5.342 5 C 0.000 4.000 6 C -0.103 4.103 7 C -0.248 4.248 8 C -0.172 4.172 9 C -0.156 4.156 10 C -0.385 4.385 11 S 0.381 5.619 12 C 0.260 3.740 13 O -0.468 6.468 14 N -0.185 5.185 15 C -0.415 4.415 16 H 0.144 0.856 17 C -0.164 4.164 18 N -0.494 5.494 19 Si 0.714 3.286 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.201 1.201 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.245 0.755 27 H 0.176 0.824 28 H 0.160 0.840 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.207 0.793 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.704 -8.742 12.103 19.604 hybrid contribution -0.606 -0.955 0.723 1.342 sum -13.311 -9.696 12.826 20.873 Atomic orbital electron populations 1.21994 0.90840 1.06125 1.04570 1.21110 0.90921 0.83271 0.75835 1.90870 1.70460 1.30516 1.45848 1.44072 1.05868 1.09726 1.74490 1.20441 0.81669 1.01427 0.96437 1.20516 1.00349 0.99072 0.90338 1.22363 0.95711 1.05201 1.01523 1.20713 1.00941 1.00198 0.95327 1.19954 0.91909 1.02356 1.01365 1.26077 1.01127 1.07132 1.04192 1.84120 1.03972 1.47887 1.25885 1.17104 0.87631 0.86520 0.82777 1.90722 1.13478 1.64453 1.78155 1.42225 1.08386 1.50519 1.17369 1.19630 0.94642 1.30667 0.96552 0.85615 1.25174 0.99099 0.96704 0.95393 1.69618 1.36225 1.36057 1.07500 0.86515 0.84358 0.79672 0.78011 1.18870 1.19816 1.20064 0.88925 0.88352 0.89013 0.75533 0.82350 0.83989 0.84774 0.82512 0.79259 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 10.32 36.01 0.37 -1.48 16 2 C 0.50 8.22 6.48 -10.99 -0.07 8.15 16 3 O -0.50 -10.92 15.59 5.54 0.09 -10.83 16 4 N -0.68 -10.73 2.75 -8.56 -0.02 -10.76 16 5 C 0.10 1.92 5.82 -81.63 -0.47 1.45 16 6 C -0.08 -1.33 9.42 -39.07 -0.37 -1.69 16 7 C -0.13 -1.85 6.19 -38.81 -0.24 -2.09 16 8 C -0.14 -1.73 10.16 -40.38 -0.41 -2.15 16 9 C -0.13 -1.33 10.14 -41.39 -0.42 -1.75 16 10 C -0.25 -2.52 11.22 29.25 0.33 -2.20 16 11 S 0.12 1.34 19.08 -107.50 -2.05 -0.71 16 12 C 0.47 11.85 7.05 -13.06 -0.09 11.76 16 13 O -0.58 -16.60 15.86 5.08 0.08 -16.52 16 14 N -0.55 -14.26 4.50 -12.32 -0.06 -14.31 16 15 C -0.29 -8.31 10.14 -15.06 -0.15 -8.46 16 16 H 0.13 4.08 7.41 -52.49 -0.39 3.69 16 17 C 0.04 1.17 5.50 -17.45 -0.10 1.08 16 18 N -0.86 -24.63 13.96 55.50 0.77 -23.85 16 19 Si 0.89 20.16 28.01 -169.99 -4.76 15.40 16 20 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.68 6.16 56.52 0.35 -5.33 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.10 1.02 8.12 -51.93 -0.42 0.60 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.40 4.91 6.96 -35.25 -0.25 4.67 16 27 H 0.16 2.79 7.55 -52.49 -0.40 2.39 16 28 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 30 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.37 8.84 3.50 -40.82 -0.14 8.69 16 32 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -34.80 294.85 -6.03 -40.83 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -2.90 Total: 13.70 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.63 Total: 2.61 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.70 Total: -48.92 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.17 Total: -27.35 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.76 Total: 15.40 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.05 Total: -0.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.80 -6.03 -40.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627705785.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.010 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds