Wall clock time and date at job start Tue Mar 31 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21304 * 120.00502 * 2 1 4 4 N 1.34774 * 119.99760 * 180.02562 * 2 1 3 5 5 C 1.40077 * 120.00420 * 185.10827 * 4 2 1 6 6 C 1.36183 * 120.00046 * 119.43663 * 5 4 2 7 7 C 1.41522 * 119.99839 * 1.39129 * 6 5 4 8 8 C 1.36929 * 125.35991 * 174.66558 * 7 6 5 9 9 C 1.37356 * 114.36345 * 180.02562 * 8 7 6 10 10 C 1.34010 * 115.25522 * 0.02562 * 9 8 7 11 11 S 1.75817 * 110.01873 * 359.73448 * 10 9 8 12 12 C 1.46208 * 119.99486 * 299.44557 * 5 4 2 13 13 O 1.21825 * 119.99477 * 174.72981 * 12 5 4 14 14 N 1.34772 * 120.00312 * 354.73036 * 12 5 4 15 15 C 1.36765 * 119.99837 * 185.07700 * 14 12 5 16 16 H 1.07998 * 120.00090 * 4.98547 * 15 14 12 17 17 C 1.39026 * 119.99569 * 184.98861 * 15 14 12 18 18 N 1.31386 * 119.99725 * 184.72553 * 17 15 14 19 19 Si 1.86798 * 120.00302 * 4.72358 * 17 15 14 20 20 H 1.48493 * 109.47101 * 94.42030 * 19 17 15 21 21 H 1.48507 * 109.47014 * 214.42110 * 19 17 15 22 22 H 1.48499 * 109.46890 * 334.41603 * 19 17 15 23 23 H 1.08995 * 109.46951 * 240.00239 * 1 2 3 24 24 H 1.09005 * 109.46499 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46968 * 119.99910 * 1 2 3 26 26 H 0.97001 * 120.00113 * 5.10816 * 4 2 1 27 27 H 1.07998 * 119.99713 * 181.38462 * 6 5 4 28 28 H 1.07997 * 122.81792 * 0.02833 * 8 7 6 29 29 H 1.08004 * 122.37505 * 180.02562 * 9 8 7 30 30 H 1.07997 * 124.98677 * 179.97438 * 10 9 8 31 31 H 0.97001 * 120.00035 * 5.07796 * 14 12 5 32 32 H 0.96997 * 120.00548 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5774 -1.1698 0.1075 6 6 4.1781 -1.7963 1.1569 7 6 3.3927 -2.4698 2.1225 8 6 3.8817 -3.2194 3.1588 9 6 2.9155 -3.7742 3.9622 10 6 1.6521 -3.4989 3.6104 11 16 1.6349 -2.4712 2.1839 12 6 4.3902 -0.4998 -0.9065 13 8 5.5973 -0.4187 -0.7635 14 7 3.8041 0.0282 -1.9992 15 6 4.5724 0.5625 -2.9965 16 1 5.6488 0.4896 -2.9468 17 6 3.9677 1.1995 -4.0742 18 7 4.6989 1.6306 -5.0771 19 14 2.1157 1.4423 -4.0965 20 1 1.7862 2.7861 -3.5573 21 1 1.6190 1.3334 -5.4918 22 1 1.4698 0.4004 -3.2584 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3632 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6987 -2.0056 -0.0757 27 1 5.2537 -1.7792 1.2522 28 1 4.9384 -3.3624 3.3302 29 1 3.1569 -4.3888 4.8169 30 1 0.7736 -3.8529 4.1293 31 1 2.8373 0.0292 -2.0783 32 1 4.2771 2.0747 -5.8292 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627705785.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:52 Heat of formation + Delta-G solvation = -39.261158 kcal Electronic energy + Delta-G solvation = -19497.913585 eV Core-core repulsion = 16356.942044 eV Total energy + Delta-G solvation = -3140.971541 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64690 -39.82728 -38.76981 -36.92806 -36.17713 -33.91504 -33.29668 -30.91764 -29.05885 -27.44933 -25.27323 -23.08619 -22.62549 -21.28886 -20.29666 -20.07299 -19.02326 -18.13372 -17.60885 -17.13727 -16.45881 -16.29426 -15.74718 -15.60479 -15.44096 -14.98366 -14.82732 -14.42416 -14.14011 -13.68260 -13.53154 -13.43213 -13.19117 -13.10110 -12.77297 -12.53831 -12.12093 -12.05672 -11.72787 -11.56821 -11.15676 -11.04396 -10.37371 -10.27245 -9.45093 -8.88880 -8.58274 -6.11092 -0.81278 0.61842 0.80537 1.05008 1.10648 1.26318 1.29339 1.46299 1.90311 2.02825 2.08141 2.35253 2.80013 3.10249 3.75084 3.90169 4.25167 4.28211 4.39333 4.46871 4.59783 4.66243 4.72070 4.87686 5.04262 5.20632 5.26991 5.38755 5.56274 5.56985 5.81199 6.21730 6.42547 6.69716 7.03172 7.22077 7.76695 8.58501 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.005837 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.865502 B = 4796.175300 C = 5612.653207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.491 3.509 3 O -0.568 6.568 4 N -0.666 5.666 5 C 0.044 3.956 6 C -0.015 4.015 7 C -0.205 4.205 8 C -0.101 4.101 9 C -0.148 4.148 10 C -0.213 4.213 11 S 0.153 5.847 12 C 0.478 3.522 13 O -0.630 6.630 14 N -0.560 5.560 15 C -0.330 4.330 16 H 0.065 0.935 17 C -0.005 4.005 18 N -0.912 5.912 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.251 1.251 22 H -0.244 1.244 23 H 0.127 0.873 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.421 0.579 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.166 0.834 30 H 0.194 0.806 31 H 0.385 0.615 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.430 -13.293 16.834 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.282 3.718 3 O -0.445 6.445 4 N -0.324 5.324 5 C -0.054 4.054 6 C -0.040 4.040 7 C -0.322 4.322 8 C -0.134 4.134 9 C -0.177 4.177 10 C -0.350 4.350 11 S 0.418 5.582 12 C 0.267 3.733 13 O -0.518 6.518 14 N -0.197 5.197 15 C -0.459 4.459 16 H 0.083 0.917 17 C -0.207 4.207 18 N -0.551 5.551 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.175 1.175 22 H -0.168 1.168 23 H 0.145 0.855 24 H 0.119 0.881 25 H 0.138 0.862 26 H 0.265 0.735 27 H 0.161 0.839 28 H 0.171 0.829 29 H 0.183 0.817 30 H 0.211 0.789 31 H 0.221 0.779 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.417 -11.710 15.780 26.258 hybrid contribution 0.923 -0.437 0.230 1.046 sum -16.494 -12.146 16.010 25.999 Atomic orbital electron populations 1.22112 0.85723 1.07369 1.07513 1.22330 0.93205 0.82279 0.74009 1.90848 1.72125 1.32678 1.48822 1.43886 1.03920 1.10656 1.73926 1.19584 0.83554 1.05466 0.96815 1.20623 1.00173 0.94455 0.88718 1.22294 0.97989 1.08885 1.03034 1.21166 1.02368 0.96591 0.93255 1.20278 0.91527 1.03414 1.02479 1.26726 1.02409 1.03567 1.02262 1.83948 1.00927 1.47185 1.26155 1.18158 0.87662 0.84413 0.83027 1.90661 1.16175 1.65653 1.79342 1.41917 1.08457 1.52142 1.17154 1.19132 0.92552 1.34852 0.99401 0.91740 1.26072 1.05173 0.95328 0.94089 1.69750 1.38853 1.37913 1.08605 0.85456 0.77062 0.80040 0.79574 1.19170 1.17520 1.16772 0.85481 0.88114 0.86205 0.73496 0.83873 0.82850 0.81661 0.78856 0.77904 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.32 71.24 0.74 -2.10 16 2 C 0.49 15.24 6.48 87.66 0.57 15.81 16 3 O -0.57 -24.77 15.59 -3.11 -0.05 -24.82 16 4 N -0.67 -19.81 2.75 -299.38 -0.82 -20.63 16 5 C 0.04 1.73 5.82 39.42 0.23 1.96 16 6 C -0.02 -0.51 9.42 22.60 0.21 -0.30 16 7 C -0.21 -5.17 6.19 22.77 0.14 -5.03 16 8 C -0.10 -2.04 10.16 21.75 0.22 -1.82 16 9 C -0.15 -2.20 10.14 21.10 0.21 -1.99 16 10 C -0.21 -2.84 11.22 66.86 0.75 -2.09 16 11 S 0.15 2.71 19.08 -56.49 -1.08 1.63 16 12 C 0.48 25.60 7.05 86.31 0.61 26.21 16 13 O -0.63 -38.99 15.86 -4.75 -0.08 -39.06 16 14 N -0.56 -30.79 4.50 -311.04 -1.40 -32.19 16 15 C -0.33 -21.00 10.14 84.11 0.85 -20.15 16 16 H 0.06 4.73 7.41 -2.91 -0.02 4.71 16 17 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 18 N -0.91 -56.28 13.96 21.68 0.30 -55.98 16 19 Si 0.96 42.53 28.01 68.60 1.92 44.45 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.24 -9.35 6.16 99.48 0.61 -8.74 16 23 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 24 H 0.10 1.72 8.12 -2.38 -0.02 1.70 16 25 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.42 8.98 6.96 -96.25 -0.67 8.31 16 27 H 0.14 5.16 7.55 -2.91 -0.02 5.14 16 28 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 29 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 31 H 0.38 18.69 3.50 -92.71 -0.32 18.36 16 32 H 0.29 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -87.87 294.85 3.89 -83.98 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.09 Total: 31.97 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.00 Total: 10.65 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -1.92 Total: -108.79 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -0.12 Total: -63.88 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.92 Total: 44.45 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.08 Total: 1.63 kcal Total: -87.87 3.89 -83.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627705785.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.716 kcal (2) G-P(sol) polarization free energy of solvation -87.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds