Wall clock time and date at job start Tue Mar 31 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86794 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47316 * 275.00607 * 3 2 1 5 5 H 1.48503 * 109.46921 * 35.00048 * 3 2 1 6 6 H 1.48494 * 109.47604 * 155.00476 * 3 2 1 7 7 C 1.40135 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00004 * 174.94977 * 7 2 1 9 9 C 1.41184 * 120.00050 * 354.94023 * 7 2 1 10 10 O 1.21870 * 119.99692 * 5.05508 * 9 7 2 11 11 N 1.34774 * 119.99946 * 185.05294 * 9 7 2 12 12 C 1.38649 * 120.00100 * 184.50139 * 11 9 7 13 13 C 1.38972 * 120.29008 * 325.25281 * 12 11 9 14 14 C 1.38307 * 120.24981 * 179.97438 * 13 12 11 15 15 C 1.38263 * 120.80755 * 0.06583 * 14 13 12 16 16 C 1.39029 * 120.17278 * 359.97391 * 15 14 13 17 17 C 1.40644 * 119.48293 * 0.02562 * 16 15 14 18 18 C 1.46057 * 106.12573 * 180.21923 * 17 16 15 19 19 C 1.34837 * 106.96014 * 359.63462 * 18 17 16 20 20 N 1.36492 * 109.84990 * 0.37429 * 19 18 17 21 21 C 1.46498 * 125.05767 * 179.75344 * 20 19 18 22 22 F 1.39907 * 109.47057 * 119.99520 * 21 20 19 23 23 F 1.39890 * 109.47549 * 240.00164 * 21 20 19 24 24 H 0.96999 * 120.00603 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00154 * 4.49640 * 11 9 7 26 26 H 1.08001 * 119.87610 * 0.02562 * 13 12 11 27 27 H 1.07996 * 119.59852 * 180.02562 * 14 13 12 28 28 H 1.08004 * 119.91371 * 180.02562 * 15 14 13 29 29 H 1.08003 * 126.51887 * 179.97438 * 18 17 16 30 30 H 1.07996 * 125.07691 * 180.08988 * 19 18 17 31 31 H 1.09000 * 109.46858 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3820 2.1075 -1.3947 5 1 1.4946 2.6198 0.8031 6 1 3.5867 1.4120 0.5915 7 6 2.0070 -1.2136 -0.0005 8 1 3.0839 -1.2154 -0.0829 9 6 1.3052 -2.4340 0.1067 10 8 0.0865 -2.4380 0.1070 11 7 1.9830 -3.5944 0.2088 12 6 1.2970 -4.7992 0.2202 13 6 0.0496 -4.8899 0.8259 14 6 -0.6342 -6.0921 0.8362 15 6 -0.0921 -7.2202 0.2487 16 6 1.1545 -7.1586 -0.3637 17 6 1.8584 -5.9410 -0.3799 18 6 3.1073 -6.2039 -1.0901 19 6 3.0942 -7.5060 -1.4401 20 7 1.9346 -8.0881 -1.0167 21 6 1.5729 -9.4923 -1.2253 22 9 1.3873 -10.1151 0.0137 23 9 0.3879 -9.5637 -1.9653 24 1 -0.4851 0.8400 0.0004 25 1 2.9508 -3.5867 0.2743 26 1 -0.3880 -4.0182 1.2896 27 1 -1.6032 -6.1506 1.3095 28 1 -0.6388 -8.1515 0.2648 29 1 3.8943 -5.4921 -1.2913 30 1 3.8816 -8.0116 -1.9793 31 1 2.3719 -9.9964 -1.7688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001629089538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:51 Heat of formation + Delta-G solvation = -64.039819 kcal Electronic energy + Delta-G solvation = -21050.521681 eV Core-core repulsion = 17354.635271 eV Total energy + Delta-G solvation = -3695.886411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.29429 -47.39529 -40.88668 -38.26247 -35.97510 -33.53404 -32.50487 -31.52041 -29.10896 -28.20512 -26.26707 -25.45445 -22.36915 -21.36259 -20.92283 -19.68947 -17.99157 -17.78543 -17.69997 -17.16281 -16.05490 -15.51050 -15.12313 -14.72889 -14.41407 -14.29493 -14.06354 -13.91712 -13.73715 -13.37862 -12.89906 -12.67001 -12.46601 -12.35306 -12.01599 -11.41295 -11.30173 -11.09453 -10.93169 -10.78021 -10.58596 -10.33739 -9.59728 -8.99925 -8.38730 -7.90898 -7.61118 -6.66655 -6.37778 -4.90631 1.58327 2.16287 2.30026 2.90166 3.04933 3.12807 3.16693 3.42895 3.97798 4.03529 4.28308 4.51378 4.64891 4.69076 4.78137 5.10798 5.51614 5.65611 5.75751 5.80963 5.92481 6.21449 6.33876 6.44139 6.93221 7.00732 7.16172 7.20538 7.24301 7.29529 7.57008 7.89573 8.05269 8.26131 8.79802 9.30303 10.38091 10.59542 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.038052 B = 0.004098 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.655810 B = 6831.219233 C = 7288.479738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.088 3.912 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.542 3.458 10 O -0.565 6.565 11 N -0.693 5.693 12 C 0.243 3.757 13 C -0.164 4.164 14 C -0.063 4.063 15 C -0.184 4.184 16 C 0.122 3.878 17 C -0.154 4.154 18 C -0.159 4.159 19 C 0.020 3.980 20 N -0.537 5.537 21 C 0.481 3.519 22 F -0.190 7.190 23 F -0.189 7.189 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.147 0.853 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 -15.149 -2.054 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.352 3.648 10 O -0.448 6.448 11 N -0.334 5.334 12 C 0.142 3.858 13 C -0.186 4.186 14 C -0.083 4.083 15 C -0.206 4.206 16 C 0.020 3.980 17 C -0.160 4.160 18 C -0.184 4.184 19 C -0.100 4.100 20 N -0.235 5.235 21 C 0.345 3.655 22 F -0.172 7.172 23 F -0.171 7.171 24 H 0.084 0.916 25 H 0.225 0.775 26 H 0.165 0.835 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.166 0.834 30 H 0.186 0.814 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.405 -15.226 -2.127 16.296 hybrid contribution 0.813 0.616 -0.092 1.024 sum 6.217 -14.611 -2.218 16.033 Atomic orbital electron populations 1.70016 1.07318 1.27900 1.32016 1.25759 0.94623 1.00698 0.92401 0.86272 0.80328 0.80864 0.78892 1.19603 1.20169 1.18611 1.19928 0.94746 0.90203 1.52369 0.91155 1.16933 0.87636 0.82008 0.78223 1.90669 1.13468 1.85487 1.55210 1.43944 1.09710 1.04454 1.75273 1.17433 0.92608 0.84570 0.91235 1.21351 0.95836 0.98407 1.03055 1.20733 0.98710 0.91558 0.97328 1.19802 0.94340 0.99381 1.07080 1.17947 0.93776 0.87950 0.98277 1.19037 0.97315 0.93290 1.06343 1.21736 0.97950 0.94783 1.03919 1.21544 0.89399 0.93937 1.05086 1.44822 1.18458 1.07584 1.52646 1.21145 0.85379 0.80758 0.78200 1.93105 1.96141 1.82061 1.45856 1.93108 1.51641 1.95868 1.76446 0.91623 0.77469 0.83511 0.86101 0.87405 0.83425 0.81354 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.38 11.73 55.55 0.65 -20.73 16 2 C 0.09 2.36 5.49 -17.35 -0.10 2.26 16 3 Si 0.91 19.18 29.56 -169.99 -5.03 14.15 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.54 -14.55 9.28 -37.75 -0.35 -14.90 16 8 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 9 C 0.54 15.07 7.38 -15.14 -0.11 14.96 16 10 O -0.56 -17.62 12.28 5.04 0.06 -17.56 16 11 N -0.69 -15.91 5.29 -12.40 -0.07 -15.97 16 12 C 0.24 5.37 6.33 -83.59 -0.53 4.84 16 13 C -0.16 -3.66 8.69 -39.28 -0.34 -4.00 16 14 C -0.06 -1.20 10.00 -39.55 -0.40 -1.59 16 15 C -0.18 -3.29 9.98 -39.28 -0.39 -3.69 16 16 C 0.12 2.20 6.70 -83.98 -0.56 1.64 16 17 C -0.15 -2.95 6.30 -104.94 -0.66 -3.61 16 18 C -0.16 -2.42 11.09 -37.66 -0.42 -2.84 16 19 C 0.02 0.25 11.25 -16.68 -0.19 0.06 16 20 N -0.54 -7.57 3.03 -120.11 -0.36 -7.94 16 21 C 0.48 5.12 5.99 59.85 0.36 5.48 16 22 F -0.19 -2.30 17.47 2.25 0.04 -2.26 16 23 F -0.19 -2.38 17.47 2.25 0.04 -2.34 16 24 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 25 H 0.39 7.75 8.77 -40.82 -0.36 7.39 16 26 H 0.15 3.67 6.18 -52.49 -0.32 3.35 16 27 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 30 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.15 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -34.46 288.04 -6.35 -40.80 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -2.34 Total: 8.89 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.69 Total: -1.39 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.22 Total: -44.64 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.06 Total: -17.56 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.08 Total: -4.60 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.46 -6.35 -40.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629089538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.236 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds