Wall clock time and date at job start Tue Mar 31 2020 01:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86794 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47316 * 275.00607 * 3 2 1 5 5 H 1.48503 * 109.46921 * 35.00048 * 3 2 1 6 6 H 1.48494 * 109.47604 * 155.00476 * 3 2 1 7 7 C 1.40135 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00004 * 174.94977 * 7 2 1 9 9 C 1.41184 * 120.00050 * 354.94023 * 7 2 1 10 10 O 1.21870 * 119.99692 * 5.05508 * 9 7 2 11 11 N 1.34774 * 119.99946 * 185.05294 * 9 7 2 12 12 C 1.38649 * 120.00100 * 184.50139 * 11 9 7 13 13 C 1.38972 * 120.29008 * 325.25281 * 12 11 9 14 14 C 1.38307 * 120.24981 * 179.97438 * 13 12 11 15 15 C 1.38263 * 120.80755 * 0.06583 * 14 13 12 16 16 C 1.39029 * 120.17278 * 359.97391 * 15 14 13 17 17 C 1.40644 * 119.48293 * 0.02562 * 16 15 14 18 18 C 1.46057 * 106.12573 * 180.21923 * 17 16 15 19 19 C 1.34837 * 106.96014 * 359.63462 * 18 17 16 20 20 N 1.36492 * 109.84990 * 0.37429 * 19 18 17 21 21 C 1.46498 * 125.05767 * 179.75344 * 20 19 18 22 22 F 1.39907 * 109.47057 * 119.99520 * 21 20 19 23 23 F 1.39890 * 109.47549 * 240.00164 * 21 20 19 24 24 H 0.96999 * 120.00603 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00154 * 4.49640 * 11 9 7 26 26 H 1.08001 * 119.87610 * 0.02562 * 13 12 11 27 27 H 1.07996 * 119.59852 * 180.02562 * 14 13 12 28 28 H 1.08004 * 119.91371 * 180.02562 * 15 14 13 29 29 H 1.08003 * 126.51887 * 179.97438 * 18 17 16 30 30 H 1.07996 * 125.07691 * 180.08988 * 19 18 17 31 31 H 1.09000 * 109.46858 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3820 2.1075 -1.3947 5 1 1.4946 2.6198 0.8031 6 1 3.5867 1.4120 0.5915 7 6 2.0070 -1.2136 -0.0005 8 1 3.0839 -1.2154 -0.0829 9 6 1.3052 -2.4340 0.1067 10 8 0.0865 -2.4380 0.1070 11 7 1.9830 -3.5944 0.2088 12 6 1.2970 -4.7992 0.2202 13 6 0.0496 -4.8899 0.8259 14 6 -0.6342 -6.0921 0.8362 15 6 -0.0921 -7.2202 0.2487 16 6 1.1545 -7.1586 -0.3637 17 6 1.8584 -5.9410 -0.3799 18 6 3.1073 -6.2039 -1.0901 19 6 3.0942 -7.5060 -1.4401 20 7 1.9346 -8.0881 -1.0167 21 6 1.5729 -9.4923 -1.2253 22 9 1.3873 -10.1151 0.0137 23 9 0.3879 -9.5637 -1.9653 24 1 -0.4851 0.8400 0.0004 25 1 2.9508 -3.5867 0.2743 26 1 -0.3880 -4.0182 1.2896 27 1 -1.6032 -6.1506 1.3095 28 1 -0.6388 -8.1515 0.2648 29 1 3.8943 -5.4921 -1.2913 30 1 3.8816 -8.0116 -1.9793 31 1 2.3719 -9.9964 -1.7688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629089538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:50 Heat of formation + Delta-G solvation = -87.686603 kcal Electronic energy + Delta-G solvation = -21051.547083 eV Core-core repulsion = 17354.635271 eV Total energy + Delta-G solvation = -3696.911812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.16742 -48.28171 -42.18140 -40.08598 -37.59533 -35.32919 -34.52006 -32.80553 -30.63326 -29.75448 -28.13429 -26.48107 -23.89625 -22.80692 -22.38225 -21.08871 -19.62312 -19.04783 -18.67075 -18.36057 -17.68140 -17.24049 -16.59388 -16.13425 -15.84075 -15.71198 -15.42316 -15.07689 -14.82475 -14.62828 -14.57535 -14.14757 -13.79596 -13.63539 -13.24107 -13.12968 -12.93063 -12.75267 -12.65530 -12.40191 -12.18412 -12.00789 -11.17549 -10.92065 -9.92531 -9.83453 -9.21158 -8.39178 -8.23511 -7.02068 0.19811 0.63298 1.31109 1.39884 1.40825 1.58222 1.71062 2.21660 2.36589 2.68150 2.90893 3.03059 3.33851 3.63942 3.68166 3.77786 3.93148 4.19666 4.29650 4.48179 4.69194 4.74280 5.00315 5.06837 5.21571 5.49042 5.58955 5.64731 5.70355 5.89570 6.05337 6.18899 6.20638 6.48442 6.72921 7.40677 8.38699 8.56923 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.038052 B = 0.004098 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.655810 B = 6831.219233 C = 7288.479738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.032 3.968 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.563 4.563 8 H 0.092 0.908 9 C 0.527 3.473 10 O -0.613 6.613 11 N -0.686 5.686 12 C 0.204 3.796 13 C -0.190 4.190 14 C -0.077 4.077 15 C -0.169 4.169 16 C 0.101 3.899 17 C -0.161 4.161 18 C -0.203 4.203 19 C 0.070 3.930 20 N -0.537 5.537 21 C 0.474 3.526 22 F -0.200 7.200 23 F -0.202 7.202 24 H 0.279 0.721 25 H 0.405 0.595 26 H 0.105 0.895 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.235 0.765 31 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.443 -17.307 -3.584 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.187 4.187 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.598 4.598 8 H 0.110 0.890 9 C 0.337 3.663 10 O -0.501 6.501 11 N -0.328 5.328 12 C 0.104 3.896 13 C -0.213 4.213 14 C -0.096 4.096 15 C -0.191 4.191 16 C -0.003 4.003 17 C -0.168 4.168 18 C -0.227 4.227 19 C -0.050 4.050 20 N -0.234 5.234 21 C 0.340 3.660 22 F -0.181 7.181 23 F -0.184 7.184 24 H 0.090 0.910 25 H 0.240 0.760 26 H 0.123 0.877 27 H 0.159 0.841 28 H 0.148 0.852 29 H 0.180 0.820 30 H 0.252 0.748 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 8.368 -17.471 -3.655 19.714 hybrid contribution -0.086 1.013 0.337 1.071 sum 8.282 -16.458 -3.318 18.721 Atomic orbital electron populations 1.70178 1.09825 1.29552 1.33296 1.27065 0.95472 1.05249 0.90881 0.84921 0.78989 0.74511 0.79387 1.18509 1.19573 1.16870 1.20463 0.95944 0.90690 1.52721 0.89002 1.17341 0.87353 0.83689 0.77917 1.90628 1.15466 1.86666 1.57330 1.43440 1.10068 1.03953 1.75382 1.17655 0.93165 0.85290 0.93500 1.21150 0.97040 0.98403 1.04712 1.20860 0.99562 0.90873 0.98324 1.20037 0.94477 0.99391 1.05238 1.18138 0.94124 0.88994 0.99022 1.19368 0.99240 0.92497 1.05685 1.22011 0.97439 0.97078 1.06175 1.22523 0.88823 0.92709 1.00975 1.45287 1.18184 1.08731 1.51181 1.22238 0.86629 0.78957 0.78151 1.93090 1.96266 1.81904 1.46878 1.93088 1.52922 1.95716 1.76644 0.91040 0.76029 0.87740 0.84146 0.85242 0.82038 0.74830 0.76263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.21 11.73 21.85 0.26 -47.95 16 2 C 0.03 1.73 5.49 85.33 0.47 2.20 16 3 Si 1.00 39.66 29.56 68.60 2.03 41.69 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 6 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 7 C -0.56 -31.59 9.28 23.45 0.22 -31.37 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.53 31.21 7.38 84.97 0.63 31.84 16 10 O -0.61 -41.42 12.28 -4.89 -0.06 -41.48 16 11 N -0.69 -33.46 5.29 -311.28 -1.65 -35.10 16 12 C 0.20 9.54 6.33 38.84 0.25 9.79 16 13 C -0.19 -9.25 8.69 22.46 0.20 -9.06 16 14 C -0.08 -3.04 10.00 22.29 0.22 -2.82 16 15 C -0.17 -6.01 9.98 22.47 0.22 -5.79 16 16 C 0.10 3.48 6.70 38.98 0.26 3.74 16 17 C -0.16 -6.20 6.30 -20.07 -0.13 -6.33 16 18 C -0.20 -5.68 11.09 23.52 0.26 -5.42 16 19 C 0.07 1.34 11.25 83.19 0.94 2.27 16 20 N -0.54 -12.84 3.03 -533.93 -1.62 -14.46 16 21 C 0.47 7.59 5.99 127.77 0.77 8.36 16 22 F -0.20 -4.03 17.47 44.97 0.79 -3.25 16 23 F -0.20 -4.30 17.47 44.97 0.79 -3.51 16 24 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 25 H 0.40 16.76 8.77 -92.71 -0.81 15.95 16 26 H 0.10 5.89 6.18 -2.91 -0.02 5.87 16 27 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 28 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.24 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.22 0.53 8.05 -2.39 -0.02 0.51 16 Total: -1.00 -83.76 288.04 5.21 -78.55 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.38 Total: 28.11 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 4.30 Total: -2.60 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.01 Total: -97.52 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.06 Total: -41.48 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 1.57 Total: -6.76 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -83.76 5.21 -78.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629089538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.138 kcal (2) G-P(sol) polarization free energy of solvation -83.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds