Wall clock time and date at job start Tue Mar 31 2020 01:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46980 * 231.75918 * 3 2 1 5 5 C 1.36888 * 120.00375 * 263.67201 * 4 3 2 6 6 H 1.07997 * 120.00446 * 147.12613 * 5 4 3 7 7 C 1.39014 * 119.99975 * 327.12906 * 5 4 3 8 8 N 1.31394 * 119.99920 * 158.75642 * 7 5 4 9 9 Si 1.86796 * 119.99787 * 338.75667 * 7 5 4 10 10 H 1.48502 * 109.47330 * 89.97806 * 9 7 5 11 11 H 1.48502 * 109.46993 * 209.97610 * 9 7 5 12 12 H 1.48502 * 109.47584 * 329.97257 * 9 7 5 13 13 C 1.34779 * 119.99701 * 83.67732 * 4 3 2 14 14 O 1.21725 * 119.99962 * 183.88730 * 13 4 3 15 15 C 1.46557 * 120.00352 * 3.88727 * 13 4 3 16 16 C 1.36776 * 126.18301 * 172.70107 * 15 13 4 17 17 N 1.30946 * 113.92329 * 180.25856 * 16 15 13 18 18 C 1.29375 * 117.46791 * 0.02562 * 17 16 15 19 19 C 1.50692 * 124.70408 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47452 * 195.00189 * 19 18 17 21 21 C 1.52998 * 109.47147 * 74.99662 * 19 18 17 22 22 O 1.42904 * 109.47347 * 314.99875 * 19 18 17 23 23 S 1.70929 * 110.59508 * 359.97438 * 18 17 16 24 24 H 4.40637 * 5.51457 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47113 * 111.76349 * 3 2 1 26 26 H 1.09002 * 109.47160 * 351.76131 * 3 2 1 27 27 H 0.97002 * 119.99775 * 180.02562 * 8 7 5 28 28 H 1.08003 * 123.03959 * 0.24583 * 16 15 13 29 29 H 1.08997 * 109.47399 * 60.00293 * 21 19 18 30 30 H 1.09001 * 109.47261 * 180.02562 * 21 19 18 31 31 H 1.09001 * 109.47217 * 299.99816 * 21 19 18 32 32 H 0.96704 * 113.99845 * 59.99024 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8558 1.0849 5 6 3.4847 2.1539 0.8283 6 1 3.3332 2.9132 1.5812 7 6 4.0359 2.4948 -0.4015 8 7 3.9899 3.7396 -0.8197 9 14 4.8420 1.1833 -1.4595 10 1 3.8267 0.5812 -2.3607 11 1 5.9227 1.7977 -2.2718 12 1 5.4175 0.1281 -0.5873 13 6 3.2376 0.3644 2.3356 14 8 3.5752 1.0936 3.2500 15 6 2.9438 -1.0478 2.5948 16 6 3.1403 -1.7100 3.7754 17 7 2.7985 -2.9735 3.7387 18 6 2.3299 -3.4329 2.6237 19 6 1.8886 -4.8563 2.4002 20 1 1.7926 -5.0432 1.3306 21 6 0.5376 -5.0843 3.0811 22 8 2.8578 -5.7482 2.9544 23 16 2.2809 -2.2014 1.4393 24 1 -1.0501 0.0000 -0.0003 25 1 3.0092 0.3819 -0.9544 26 1 3.0098 -1.0162 0.1473 27 1 4.3743 3.9774 -1.6780 28 1 3.5412 -1.2338 4.6579 29 1 -0.2018 -4.4040 2.6584 30 1 0.2185 -6.1140 2.9198 31 1 0.6337 -4.8974 4.1507 32 1 2.9954 -5.6380 3.9052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633687290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:59 Heat of formation + Delta-G solvation = 43.573984 kcal Electronic energy + Delta-G solvation = -19419.583207 eV Core-core repulsion = 16282.203667 eV Total energy + Delta-G solvation = -3137.379539 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75453 -38.93999 -37.09824 -35.58954 -33.00882 -31.88057 -31.65869 -29.53076 -27.20252 -26.40239 -24.91942 -22.81712 -21.02951 -18.99265 -18.82184 -18.18958 -17.07519 -16.85024 -16.05813 -15.88368 -15.31287 -15.02791 -14.56049 -14.30514 -13.94905 -13.78519 -13.30547 -13.24638 -12.75232 -12.45408 -12.42214 -12.16773 -11.50237 -11.25183 -11.14367 -10.97834 -10.71519 -10.47250 -10.13801 -9.90967 -9.46605 -9.30529 -8.94682 -8.90836 -8.60926 -8.18432 -6.68258 -4.18141 0.52647 1.46087 1.87086 2.73049 2.81082 2.95620 3.02079 3.05375 3.17599 3.83402 3.86581 4.00065 4.23670 4.37672 4.54616 4.77305 4.87798 4.88476 5.13442 5.23044 5.44476 5.51146 5.62588 5.66734 5.71662 5.89580 6.17055 6.41201 7.18689 7.41888 7.82730 7.89432 7.95780 8.17547 8.62523 8.96723 9.38611 10.42214 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.005989 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.031218 B = 4674.168043 C = 4872.624451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.188 4.188 3 C 0.178 3.822 4 N -0.442 5.442 5 C -0.310 4.310 6 H 0.119 0.881 7 C 0.061 3.939 8 N -0.841 5.841 9 Si 0.862 3.138 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.256 1.256 13 C 0.529 3.471 14 O -0.545 6.545 15 C -0.250 4.250 16 C 0.084 3.916 17 N -0.468 5.468 18 C -0.047 4.047 19 C 0.189 3.811 20 H 0.114 0.886 21 C -0.177 4.177 22 O -0.551 6.551 23 S 0.190 5.810 24 H 0.218 0.782 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.281 0.719 28 H 0.185 0.815 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -15.315 0.269 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C 0.053 3.947 4 N -0.161 5.161 5 C -0.437 4.437 6 H 0.137 0.863 7 C -0.147 4.147 8 N -0.476 5.476 9 Si 0.689 3.311 10 H -0.193 1.193 11 H -0.202 1.202 12 H -0.180 1.180 13 C 0.318 3.682 14 O -0.427 6.427 15 C -0.374 4.374 16 C -0.073 4.073 17 N -0.183 5.183 18 C -0.321 4.321 19 C 0.127 3.873 20 H 0.131 0.869 21 C -0.236 4.236 22 O -0.357 6.357 23 S 0.448 5.552 24 H 0.235 0.765 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.202 0.798 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.235 -15.356 -0.621 16.585 hybrid contribution 0.543 0.194 0.565 0.807 sum -5.691 -15.162 -0.056 16.195 Atomic orbital electron populations 1.24726 0.95530 1.00693 0.99807 1.23205 0.94413 1.00294 1.01073 1.19206 0.85337 0.94868 0.95301 1.43627 1.55188 1.11794 1.05492 1.19199 1.40126 0.81894 1.02513 0.86335 1.25349 0.96091 0.96451 0.96812 1.69706 1.39718 1.17888 1.20268 0.87256 0.80229 0.82718 0.80883 1.19273 1.20152 1.18029 1.16645 0.83298 0.84031 0.84233 1.90723 1.51413 1.57915 1.42678 1.26564 1.11922 1.00672 0.98260 1.22230 0.99713 0.87598 0.97770 1.65942 1.13314 1.13816 1.25216 1.28629 1.04457 1.03977 0.95069 1.20356 0.87930 0.80215 0.98824 0.86856 1.22466 0.96338 1.02757 1.02044 1.86523 1.61531 1.58629 1.28971 1.84483 1.57048 0.99698 1.13943 0.76482 0.86884 0.89652 0.90874 0.79820 0.91219 0.90887 0.91411 0.76628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 19.25 29.55 0.57 -2.41 16 2 C -0.19 -3.52 11.52 -37.12 -0.43 -3.95 16 3 C 0.18 3.65 4.07 -6.83 -0.03 3.62 16 4 N -0.44 -10.77 2.25 -119.46 -0.27 -11.04 16 5 C -0.31 -8.52 9.50 -15.01 -0.14 -8.66 16 6 H 0.12 3.64 7.77 -52.49 -0.41 3.23 16 7 C 0.06 1.62 5.33 -17.45 -0.09 1.52 16 8 N -0.84 -23.00 13.96 55.50 0.77 -22.23 16 9 Si 0.86 18.93 24.97 -169.99 -4.24 14.69 16 10 H -0.27 -5.29 6.43 56.52 0.36 -4.93 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 13 C 0.53 12.78 7.52 -12.91 -0.10 12.68 16 14 O -0.54 -14.83 16.68 5.17 0.09 -14.74 16 15 C -0.25 -4.94 6.30 -36.76 -0.23 -5.18 16 16 C 0.08 1.51 11.17 -18.46 -0.21 1.30 16 17 N -0.47 -7.57 10.32 -11.25 -0.12 -7.68 16 18 C -0.05 -0.69 6.27 -13.32 -0.08 -0.77 16 19 C 0.19 2.14 4.09 -27.89 -0.11 2.03 16 20 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.18 -1.63 9.52 37.16 0.35 -1.28 16 22 O -0.55 -6.60 13.32 -35.23 -0.47 -7.07 16 23 S 0.19 3.00 16.69 -107.50 -1.79 1.21 16 24 H 0.22 2.42 7.80 -54.09 -0.42 2.00 16 25 H 0.11 2.38 2.72 -51.93 -0.14 2.24 16 26 H 0.09 1.59 4.15 -20.89 -0.09 1.50 16 27 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.18 3.15 8.06 -52.48 -0.42 2.72 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.38 3.87 8.89 45.56 0.40 4.27 16 LS Contribution 293.61 15.07 4.42 4.42 Total: -1.00 -31.25 293.61 -4.05 -35.30 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -1.94 Total: 8.22 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.50 Total: -1.08 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.39 Total: -40.96 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.38 Total: -21.81 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.24 Total: 14.69 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.79 Total: 1.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.25 -4.05 -35.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633687290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.871 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds