Wall clock time and date at job start Tue Mar 31 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47408 * 2 1 4 4 C 1.50701 * 109.46915 * 239.99458 * 2 1 3 5 5 H 1.08000 * 120.00250 * 240.00081 * 4 2 1 6 6 C 1.37880 * 119.99677 * 60.00778 * 4 2 1 7 7 N 1.31505 * 120.00006 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99855 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47350 * 59.99258 * 8 6 4 10 10 H 1.48502 * 109.47295 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47240 * 299.99750 * 8 6 4 12 12 N 1.46900 * 109.46979 * 120.00121 * 2 1 3 13 13 C 1.46900 * 111.00115 * 274.99543 * 12 2 1 14 14 C 1.50699 * 109.47649 * 179.97438 * 13 12 2 15 15 N 1.27893 * 124.23458 * 89.99803 * 14 13 12 16 16 C 1.34722 * 117.84602 * 180.02562 * 15 14 13 17 17 C 1.40962 * 129.65347 * 180.02562 * 16 15 14 18 18 C 1.36159 * 120.45970 * 180.02562 * 17 16 15 19 19 C 1.38988 * 120.75057 * 359.93426 * 18 17 16 20 20 F 1.35101 * 119.99291 * 180.02562 * 19 18 17 21 21 C 1.37851 * 120.01329 * 0.02783 * 19 18 17 22 22 C 1.39335 * 119.93963 * 0.02562 * 21 19 18 23 23 S 1.70648 * 124.23385 * 270.00453 * 14 13 12 24 24 H 1.09002 * 109.46780 * 59.99824 * 1 2 3 25 25 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46877 * 300.00051 * 1 2 3 27 27 H 0.97006 * 120.00479 * 180.02562 * 7 6 4 28 28 H 1.00899 * 111.00543 * 151.04701 * 12 2 1 29 29 H 1.09004 * 109.46788 * 60.00103 * 13 12 2 30 30 H 1.09001 * 109.47252 * 300.00418 * 13 12 2 31 31 H 1.07998 * 119.76839 * 359.96138 * 17 16 15 32 32 H 1.08003 * 119.63034 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.02843 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1193 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5218 3.5561 15 7 3.8216 -0.6223 3.8756 16 6 4.1293 -1.3202 4.9862 17 6 5.3884 -1.5852 5.5620 18 6 5.4842 -2.3222 6.7029 19 6 4.3459 -2.8254 7.3216 20 9 4.4587 -3.5544 8.4534 21 6 3.1018 -2.5808 6.7806 22 6 2.9868 -1.8294 5.6129 23 16 1.5836 -1.3362 4.6702 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7083 1.1609 -3.4844 28 1 2.9173 -1.1206 1.0288 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 6.2833 -1.2019 5.0945 32 1 6.4557 -2.5175 7.1324 33 1 2.2171 -2.9721 7.2609 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657903265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:59 Heat of formation + Delta-G solvation = 10.109224 kcal Electronic energy + Delta-G solvation = -18276.371861 eV Core-core repulsion = 15149.913970 eV Total energy + Delta-G solvation = -3126.457891 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.17093 -40.40784 -37.25045 -35.71959 -32.75464 -31.50431 -30.30438 -28.38780 -25.99069 -25.07118 -24.05713 -22.62451 -20.84617 -19.89902 -18.77485 -17.67893 -16.90214 -16.42314 -15.93132 -15.65305 -15.11630 -14.76622 -14.36041 -14.23147 -14.01119 -13.52824 -13.45703 -13.16731 -12.46798 -12.40971 -11.96635 -11.58806 -11.27931 -10.97315 -10.93480 -10.81308 -10.44082 -10.34669 -10.21364 -10.10145 -9.59497 -8.94040 -8.65943 -8.52871 -8.25407 -7.49698 -6.08333 -4.15105 0.22389 0.79082 1.16276 1.73491 2.12769 3.29238 3.33535 3.36245 3.38278 3.81761 3.96038 4.33859 4.37192 4.64380 4.91719 4.97704 5.21190 5.22856 5.35303 5.55662 5.59943 5.77016 5.85266 5.94094 6.05625 6.43165 6.75893 7.03188 7.09919 7.35334 7.59811 7.70685 7.78702 8.16183 8.22616 8.50288 8.92560 9.50985 10.98018 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033851 B = 0.003421 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.955980 B = 8183.680462 C = 8594.235342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.213 3.787 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.680 5.680 13 C 0.124 3.876 14 C 0.121 3.879 15 N -0.471 5.471 16 C 0.081 3.919 17 C -0.036 4.036 18 C -0.140 4.140 19 C 0.105 3.895 20 F -0.135 7.135 21 C -0.103 4.103 22 C -0.177 4.177 23 S 0.141 5.859 24 H 0.083 0.917 25 H 0.033 0.967 26 H 0.005 0.995 27 H 0.263 0.737 28 H 0.339 0.661 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -3.939 18.426 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.313 5.313 13 C -0.009 4.009 14 C -0.163 4.163 15 N -0.185 5.185 16 C -0.041 4.041 17 C -0.057 4.057 18 C -0.162 4.162 19 C 0.082 3.918 20 F -0.113 7.113 21 C -0.126 4.126 22 C -0.297 4.297 23 S 0.399 5.601 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.024 0.976 27 H 0.072 0.928 28 H 0.156 0.844 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.141 -3.914 18.135 18.817 hybrid contribution 1.924 -0.225 -0.571 2.019 sum 5.065 -4.139 17.564 18.743 Atomic orbital electron populations 1.21753 0.97576 0.99600 0.99567 1.19162 0.92741 0.92556 0.84910 0.97614 1.21175 1.31793 1.12704 0.90266 0.92156 1.24897 0.94941 0.94960 0.99052 1.69871 1.36396 1.22787 1.23742 0.86552 0.79136 0.79772 0.81906 1.20149 1.21252 1.20262 1.60890 1.32822 1.32114 1.05489 1.20706 1.00372 0.93364 0.86410 1.27085 0.90445 0.98368 1.00452 1.66277 1.18523 1.18792 1.14918 1.19280 0.94168 0.98405 0.92199 1.20231 0.95419 0.96173 0.93838 1.20640 0.98343 1.00388 0.96857 1.17350 0.93874 0.95713 0.84864 1.91513 1.96843 1.74944 1.48034 1.20120 0.97151 1.00300 0.95072 1.23754 0.98017 1.06261 1.01678 1.84105 1.07639 1.50342 1.18041 0.89817 0.94737 0.97628 0.92751 0.84351 0.89062 0.92231 0.83786 0.83705 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.19 37.16 0.34 -2.67 16 2 C 0.21 5.20 2.60 -68.86 -0.18 5.02 16 3 H 0.01 0.16 7.80 -51.93 -0.40 -0.24 16 4 C -0.52 -13.99 8.59 -34.44 -0.30 -14.29 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.21 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.68 -14.08 6.29 -109.22 -0.69 -14.77 16 13 C 0.12 2.16 6.04 -4.98 -0.03 2.13 16 14 C 0.12 1.94 6.80 -13.92 -0.09 1.85 16 15 N -0.47 -7.73 10.57 -9.09 -0.10 -7.82 16 16 C 0.08 1.17 7.00 -84.94 -0.59 0.57 16 17 C -0.04 -0.41 10.05 -39.30 -0.39 -0.80 16 18 C -0.14 -1.35 9.92 -40.05 -0.40 -1.75 16 19 C 0.10 1.11 7.30 -39.44 -0.29 0.83 16 20 F -0.13 -1.42 17.27 2.25 0.04 -1.38 16 21 C -0.10 -1.15 10.05 -39.32 -0.40 -1.55 16 22 C -0.18 -2.36 6.56 -38.55 -0.25 -2.62 16 23 S 0.14 1.92 23.11 -107.50 -2.48 -0.57 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.34 7.16 8.22 -39.29 -0.32 6.84 16 29 H 0.09 1.49 7.44 -51.93 -0.39 1.10 16 30 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -28.39 302.07 -9.20 -37.59 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.46 Total: 2.27 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.67 Total: -11.64 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.16 Total: -46.80 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.48 Total: -0.57 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.39 -9.20 -37.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657903265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.700 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds