Wall clock time and date at job start Tue Mar 31 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47408 * 2 1 4 4 C 1.50701 * 109.46915 * 239.99458 * 2 1 3 5 5 H 1.08000 * 120.00250 * 240.00081 * 4 2 1 6 6 C 1.37880 * 119.99677 * 60.00778 * 4 2 1 7 7 N 1.31505 * 120.00006 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99855 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47350 * 59.99258 * 8 6 4 10 10 H 1.48502 * 109.47295 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47240 * 299.99750 * 8 6 4 12 12 N 1.46900 * 109.46979 * 120.00121 * 2 1 3 13 13 C 1.46900 * 111.00115 * 274.99543 * 12 2 1 14 14 C 1.50699 * 109.47649 * 179.97438 * 13 12 2 15 15 N 1.27893 * 124.23458 * 89.99803 * 14 13 12 16 16 C 1.34722 * 117.84602 * 180.02562 * 15 14 13 17 17 C 1.40962 * 129.65347 * 180.02562 * 16 15 14 18 18 C 1.36159 * 120.45970 * 180.02562 * 17 16 15 19 19 C 1.38988 * 120.75057 * 359.93426 * 18 17 16 20 20 F 1.35101 * 119.99291 * 180.02562 * 19 18 17 21 21 C 1.37851 * 120.01329 * 0.02783 * 19 18 17 22 22 C 1.39335 * 119.93963 * 0.02562 * 21 19 18 23 23 S 1.70648 * 124.23385 * 270.00453 * 14 13 12 24 24 H 1.09002 * 109.46780 * 59.99824 * 1 2 3 25 25 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46877 * 300.00051 * 1 2 3 27 27 H 0.97006 * 120.00479 * 180.02562 * 7 6 4 28 28 H 1.00899 * 111.00543 * 151.04701 * 12 2 1 29 29 H 1.09004 * 109.46788 * 60.00103 * 13 12 2 30 30 H 1.09001 * 109.47252 * 300.00418 * 13 12 2 31 31 H 1.07998 * 119.76839 * 359.96138 * 17 16 15 32 32 H 1.08003 * 119.63034 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.02843 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1193 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5218 3.5561 15 7 3.8216 -0.6223 3.8756 16 6 4.1293 -1.3202 4.9862 17 6 5.3884 -1.5852 5.5620 18 6 5.4842 -2.3222 6.7029 19 6 4.3459 -2.8254 7.3216 20 9 4.4587 -3.5544 8.4534 21 6 3.1018 -2.5808 6.7806 22 6 2.9868 -1.8294 5.6129 23 16 1.5836 -1.3362 4.6702 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7083 1.1609 -3.4844 28 1 2.9173 -1.1206 1.0288 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 6.2833 -1.2019 5.0945 32 1 6.4557 -2.5175 7.1324 33 1 2.2171 -2.9721 7.2609 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657903265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:59 Heat of formation + Delta-G solvation = -7.223674 kcal Electronic energy + Delta-G solvation = -18277.123472 eV Core-core repulsion = 15149.913970 eV Total energy + Delta-G solvation = -3127.209502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.01686 -41.42270 -38.47560 -37.25834 -34.61624 -32.38735 -31.79826 -29.77852 -27.61215 -26.86679 -25.08140 -23.65161 -22.06289 -21.69491 -19.78713 -18.68415 -18.57866 -17.56382 -16.97633 -16.77793 -16.59908 -16.13095 -15.93538 -15.34338 -15.09464 -14.95771 -14.58239 -14.35436 -14.05647 -13.57942 -13.33916 -13.15716 -12.80132 -12.76758 -12.49348 -12.29159 -12.18406 -11.96422 -11.89982 -11.28919 -10.95156 -10.73957 -10.57106 -9.66983 -9.27891 -9.16238 -8.14209 -6.28066 -0.79852 -0.07558 0.12531 0.64648 1.08672 1.43497 1.44715 1.52433 2.40231 2.44180 2.73759 3.09568 3.14891 3.43528 3.65108 3.82756 3.96819 4.02661 4.26542 4.39983 4.54556 4.76926 4.78544 4.85750 4.97820 5.05029 5.08671 5.18467 5.44149 5.58622 5.63908 5.83218 6.21084 6.33175 6.51280 6.63352 6.90620 7.41820 8.91154 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033851 B = 0.003421 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.955980 B = 8183.680462 C = 8594.235342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.218 3.782 3 H -0.021 1.021 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.676 5.676 13 C 0.130 3.870 14 C 0.094 3.906 15 N -0.489 5.489 16 C 0.049 3.951 17 C -0.039 4.039 18 C -0.126 4.126 19 C 0.112 3.888 20 F -0.131 7.131 21 C -0.108 4.108 22 C -0.185 4.185 23 S 0.168 5.832 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.334 0.666 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 -5.226 19.958 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 H -0.003 1.003 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.308 5.308 13 C -0.002 4.002 14 C -0.191 4.191 15 N -0.204 5.204 16 C -0.072 4.072 17 C -0.060 4.060 18 C -0.147 4.147 19 C 0.089 3.911 20 F -0.109 7.109 21 C -0.132 4.132 22 C -0.305 4.305 23 S 0.426 5.574 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.178 0.822 32 H 0.197 0.803 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.024 -5.203 19.686 20.756 hybrid contribution 1.722 0.124 -0.857 1.928 sum 5.746 -5.079 18.829 20.331 Atomic orbital electron populations 1.21573 0.97074 0.99193 0.99559 1.18961 0.93094 0.91089 0.85895 1.00335 1.21513 1.31987 1.12836 0.91618 0.92511 1.25665 0.95100 0.95638 1.01850 1.69991 1.37165 1.23850 1.24356 0.85574 0.78672 0.78699 0.78448 1.19711 1.20778 1.19777 1.60768 1.32503 1.32436 1.05082 1.20587 1.00852 0.92766 0.86005 1.26653 0.91260 1.00115 1.01029 1.66216 1.19010 1.19134 1.16027 1.19633 0.95735 0.99475 0.92314 1.20506 0.94921 0.96270 0.94258 1.20979 0.99587 0.98499 0.95667 1.17480 0.94008 0.94975 0.84625 1.91534 1.96813 1.74753 1.47805 1.20344 0.98425 0.99927 0.94462 1.23892 0.97496 1.06766 1.02352 1.83833 1.07030 1.49527 1.17044 0.92199 0.95155 0.95215 0.92699 0.84864 0.88122 0.93171 0.82226 0.80288 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 9.19 71.98 0.66 -4.89 16 2 C 0.22 10.85 2.60 44.17 0.11 10.97 16 3 H -0.02 -1.14 7.80 -2.39 -0.02 -1.16 16 4 C -0.54 -29.52 8.59 25.60 0.22 -29.30 16 5 H 0.06 3.06 7.62 -2.91 -0.02 3.04 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.91 -51.80 11.32 21.45 0.24 -51.56 16 8 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.68 -28.48 6.29 -499.46 -3.14 -31.62 16 13 C 0.13 4.61 6.04 85.56 0.52 5.13 16 14 C 0.09 3.00 6.80 88.68 0.60 3.61 16 15 N -0.49 -16.04 10.57 -182.51 -1.93 -17.97 16 16 C 0.05 1.37 7.00 39.77 0.28 1.65 16 17 C -0.04 -0.80 10.05 22.45 0.23 -0.57 16 18 C -0.13 -2.00 9.92 21.97 0.22 -1.78 16 19 C 0.11 2.04 7.30 22.36 0.16 2.20 16 20 F -0.13 -2.31 17.27 44.97 0.78 -1.53 16 21 C -0.11 -2.16 10.05 22.44 0.23 -1.94 16 22 C -0.19 -4.68 6.56 22.94 0.15 -4.53 16 23 S 0.17 4.44 23.11 -56.49 -1.31 3.13 16 24 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 25 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.03 1.23 7.45 -2.39 -0.02 1.21 16 27 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 28 H 0.33 14.47 8.22 -89.69 -0.74 13.74 16 29 H 0.10 3.30 7.44 -2.39 -0.02 3.28 16 30 H 0.05 1.85 8.06 -2.39 -0.02 1.83 16 31 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -60.89 302.07 0.91 -59.98 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.41 Total: 12.44 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 3.83 Total: -18.07 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -4.83 Total: -101.15 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.53 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.31 Total: 3.13 kcal Total: -60.89 0.91 -59.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657903265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.755 kcal (2) G-P(sol) polarization free energy of solvation -60.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds