Wall clock time and date at job start Tue Mar 31 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31507 * 119.99694 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 119.99920 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47165 * 90.00309 * 8 6 4 10 10 H 1.48508 * 109.47087 * 210.00079 * 8 6 4 11 11 H 1.48503 * 109.47318 * 330.00095 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 2 15 15 N 1.27893 * 124.23313 * 89.70074 * 14 13 12 16 16 C 1.34724 * 117.84120 * 179.76862 * 15 14 13 17 17 C 1.40959 * 129.65365 * 180.21227 * 16 15 14 18 18 C 1.36166 * 120.45952 * 180.32634 * 17 16 15 19 19 C 1.38992 * 120.75162 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.99460 * 179.97438 * 19 18 17 21 21 C 1.37847 * 120.01060 * 359.97438 * 19 18 17 22 22 C 1.39337 * 119.93819 * 0.02588 * 21 19 18 23 23 S 1.70644 * 124.23220 * 270.00251 * 14 13 12 24 24 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 27 27 H 0.97002 * 120.00161 * 180.02562 * 7 6 4 28 28 H 1.00902 * 111.00273 * 208.95722 * 12 2 1 29 29 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 30 30 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 31 31 H 1.08004 * 119.77605 * 0.32454 * 17 16 15 32 32 H 1.08001 * 119.62818 * 179.97438 * 18 17 16 33 33 H 1.08000 * 120.03062 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1378 -0.8590 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8492 2.1773 1.4922 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5886 -0.5217 -3.5557 15 7 1.8377 -1.1373 -4.3880 16 6 2.4277 -1.7574 -5.4284 17 6 1.8497 -2.4951 -6.4813 18 6 2.6337 -3.0546 -7.4438 19 6 4.0157 -2.9105 -7.4073 20 9 4.7790 -3.4725 -8.3699 21 6 4.6075 -2.1943 -6.3890 22 6 3.8192 -1.6156 -5.3965 23 16 4.2358 -0.6545 -3.9810 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9032 -0.5278 4.4376 28 1 2.9173 -1.1206 -1.0286 29 1 1.0872 0.6162 -2.5526 30 1 2.7589 1.0461 -2.1182 31 1 0.7775 -2.6174 -6.5251 32 1 2.1767 -3.6174 -8.2443 33 1 5.6813 -2.0818 -6.3605 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657903269.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:02 Heat of formation + Delta-G solvation = 20.040263 kcal Electronic energy + Delta-G solvation = -18330.376098 eV Core-core repulsion = 15204.348849 eV Total energy + Delta-G solvation = -3126.027249 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.21259 -40.46392 -37.35129 -35.97043 -32.72044 -31.55953 -30.79008 -28.90674 -26.19282 -25.01756 -24.12180 -22.65485 -20.99697 -20.04541 -18.80253 -17.74240 -17.10119 -16.58379 -15.97705 -15.87836 -15.31319 -14.93860 -14.36894 -14.17314 -13.99862 -13.78785 -13.47823 -13.37675 -12.76130 -12.52454 -12.21948 -12.10082 -11.59898 -11.26186 -11.05366 -10.99078 -10.70695 -10.41170 -10.17088 -9.65330 -9.55318 -9.13546 -8.73737 -8.67569 -8.32014 -7.72561 -6.15923 -4.17087 0.15743 0.74062 1.06504 1.60665 2.07691 3.23316 3.31652 3.33149 3.34647 3.75054 3.91349 4.28764 4.32699 4.59045 4.83642 4.89020 5.05536 5.15753 5.20488 5.45677 5.55239 5.65960 5.78466 5.80576 5.96188 6.30459 6.38071 6.45954 6.60986 6.71825 7.28655 7.44203 7.57250 7.74401 8.12718 8.49366 8.87450 9.44883 10.96816 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.041669 B = 0.003443 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.795902 B = 8129.356164 C = 8342.180234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.185 3.815 3 H 0.005 0.995 4 C -0.524 4.524 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.668 5.668 13 C 0.123 3.877 14 C 0.119 3.881 15 N -0.453 5.453 16 C 0.080 3.920 17 C -0.034 4.034 18 C -0.140 4.140 19 C 0.108 3.892 20 F -0.134 7.134 21 C -0.104 4.104 22 C -0.169 4.169 23 S 0.117 5.883 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.342 0.658 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 -0.039 -21.131 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.076 3.924 3 H 0.023 0.977 4 C -0.562 4.562 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.225 1.225 11 H -0.193 1.193 12 N -0.301 5.301 13 C -0.010 4.010 14 C -0.167 4.167 15 N -0.166 5.166 16 C -0.042 4.042 17 C -0.054 4.054 18 C -0.162 4.162 19 C 0.085 3.915 20 F -0.112 7.112 21 C -0.128 4.128 22 C -0.289 4.289 23 S 0.374 5.626 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.969 0.116 -20.511 20.726 hybrid contribution -0.132 0.639 -0.323 0.728 sum 2.837 0.755 -20.835 21.041 Atomic orbital electron populations 1.22085 0.98316 1.01359 0.97912 1.19578 0.92066 0.93026 0.87699 0.97711 1.21045 1.32716 1.13976 0.88435 0.90233 1.24917 0.95604 0.96751 0.95671 1.69880 1.45234 1.40193 0.97987 0.86802 0.80749 0.83431 0.76870 1.20383 1.22462 1.19297 1.60556 1.33272 1.31810 1.04448 1.20750 1.01623 0.92507 0.86078 1.26990 0.92187 0.98199 0.99276 1.66216 1.37681 1.09938 1.02755 1.19327 0.88551 1.00726 0.95588 1.20248 1.00783 0.93927 0.90465 1.20662 0.91598 1.02868 1.01073 1.17354 0.88957 0.97346 0.87854 1.91518 1.75520 1.82953 1.61242 1.20126 1.00311 0.99215 0.93120 1.23657 0.97513 1.06301 1.01430 1.84130 1.10394 1.49838 1.18208 0.92125 0.94288 0.95341 0.92448 0.83912 0.88100 0.93008 0.83658 0.83606 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.90 37.16 0.33 -2.69 16 2 C 0.18 4.20 2.19 -68.86 -0.15 4.05 16 3 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 4 C -0.52 -14.23 9.17 -34.43 -0.32 -14.55 16 5 H 0.08 2.34 7.86 -52.49 -0.41 1.93 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -26.76 13.96 55.43 0.77 -25.98 16 8 Si 0.89 21.42 24.37 -169.99 -4.14 17.28 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 12 N -0.67 -13.20 6.29 -109.21 -0.69 -13.88 16 13 C 0.12 1.99 6.04 -4.97 -0.03 1.96 16 14 C 0.12 1.81 6.80 -13.92 -0.09 1.72 16 15 N -0.45 -7.23 10.57 -9.09 -0.10 -7.32 16 16 C 0.08 1.11 7.00 -84.94 -0.59 0.51 16 17 C -0.03 -0.37 10.05 -39.30 -0.39 -0.76 16 18 C -0.14 -1.29 9.92 -40.05 -0.40 -1.69 16 19 C 0.11 1.10 7.30 -39.45 -0.29 0.82 16 20 F -0.13 -1.36 17.27 2.25 0.04 -1.33 16 21 C -0.10 -1.13 10.05 -39.32 -0.40 -1.52 16 22 C -0.17 -2.18 6.56 -38.55 -0.25 -2.43 16 23 S 0.12 1.50 23.11 -107.50 -2.48 -0.98 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.04 0.87 3.27 -51.93 -0.17 0.70 16 26 H 0.03 0.53 7.45 -51.93 -0.39 0.15 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.34 6.75 8.22 -39.29 -0.32 6.42 16 29 H 0.10 1.62 7.44 -51.93 -0.39 1.23 16 30 H 0.05 0.76 8.06 -51.93 -0.42 0.35 16 31 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 295.25 15.07 4.45 4.45 Total: -1.00 -30.08 295.25 -8.15 -38.24 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.32 Total: 2.15 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.68 Total: -12.61 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.01 Total: -47.19 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.08 -8.15 -38.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657903269.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.278 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds