Wall clock time and date at job start Tue Mar 31 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31507 * 119.99694 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 119.99920 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47165 * 90.00309 * 8 6 4 10 10 H 1.48508 * 109.47087 * 210.00079 * 8 6 4 11 11 H 1.48503 * 109.47318 * 330.00095 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 2 15 15 N 1.27893 * 124.23313 * 89.70074 * 14 13 12 16 16 C 1.34724 * 117.84120 * 179.76862 * 15 14 13 17 17 C 1.40959 * 129.65365 * 180.21227 * 16 15 14 18 18 C 1.36166 * 120.45952 * 180.32634 * 17 16 15 19 19 C 1.38992 * 120.75162 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.99460 * 179.97438 * 19 18 17 21 21 C 1.37847 * 120.01060 * 359.97438 * 19 18 17 22 22 C 1.39337 * 119.93819 * 0.02588 * 21 19 18 23 23 S 1.70644 * 124.23220 * 270.00251 * 14 13 12 24 24 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 27 27 H 0.97002 * 120.00161 * 180.02562 * 7 6 4 28 28 H 1.00902 * 111.00273 * 208.95722 * 12 2 1 29 29 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 30 30 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 31 31 H 1.08004 * 119.77605 * 0.32454 * 17 16 15 32 32 H 1.08001 * 119.62818 * 179.97438 * 18 17 16 33 33 H 1.08000 * 120.03062 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1378 -0.8590 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8492 2.1773 1.4922 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5886 -0.5217 -3.5557 15 7 1.8377 -1.1373 -4.3880 16 6 2.4277 -1.7574 -5.4284 17 6 1.8497 -2.4951 -6.4813 18 6 2.6337 -3.0546 -7.4438 19 6 4.0157 -2.9105 -7.4073 20 9 4.7790 -3.4725 -8.3699 21 6 4.6075 -2.1943 -6.3890 22 6 3.8192 -1.6156 -5.3965 23 16 4.2358 -0.6545 -3.9810 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9032 -0.5278 4.4376 28 1 2.9173 -1.1206 -1.0286 29 1 1.0872 0.6162 -2.5526 30 1 2.7589 1.0461 -2.1182 31 1 0.7775 -2.6174 -6.5251 32 1 2.1767 -3.6174 -8.2443 33 1 5.6813 -2.0818 -6.3605 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657903269.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:02 Heat of formation + Delta-G solvation = -0.607976 kcal Electronic energy + Delta-G solvation = -18331.271473 eV Core-core repulsion = 15204.348849 eV Total energy + Delta-G solvation = -3126.922623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.03037 -41.42415 -38.55391 -37.37113 -34.62397 -32.46771 -32.29634 -30.11954 -27.59882 -26.84599 -25.10543 -23.63224 -22.09613 -21.79951 -19.75378 -18.92719 -18.65977 -17.74414 -17.21669 -16.80906 -16.56345 -16.16774 -15.71580 -15.40294 -15.19472 -15.05749 -14.74503 -14.54896 -14.20816 -13.95275 -13.59994 -13.35004 -12.93153 -12.81320 -12.67116 -12.38747 -12.07749 -11.93298 -11.43427 -11.31187 -11.10166 -10.78338 -10.71005 -9.70602 -9.27491 -9.24115 -8.31028 -6.36747 -0.81169 -0.08838 0.08655 0.58297 1.09064 1.34296 1.37566 1.48506 2.31899 2.42184 2.73531 3.04374 3.08392 3.39829 3.51662 3.81093 3.95390 4.00985 4.24823 4.35673 4.46655 4.62927 4.72020 4.76394 4.80303 4.84521 4.96987 4.99663 5.03860 5.46836 5.57554 5.60184 5.90410 6.39229 6.51077 6.56545 6.74672 7.29615 8.85322 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.041669 B = 0.003443 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.795902 B = 8129.356164 C = 8342.180234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.189 3.811 3 H 0.011 0.989 4 C -0.527 4.527 5 H 0.040 0.960 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.243 1.243 12 N -0.676 5.676 13 C 0.127 3.873 14 C 0.094 3.906 15 N -0.473 5.473 16 C 0.049 3.951 17 C -0.037 4.037 18 C -0.126 4.126 19 C 0.113 3.887 20 F -0.131 7.131 21 C -0.110 4.110 22 C -0.180 4.180 23 S 0.141 5.859 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.267 0.733 28 H 0.338 0.662 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 0.738 -23.614 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.080 3.920 3 H 0.029 0.971 4 C -0.565 4.565 5 H 0.058 0.942 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.226 1.226 11 H -0.167 1.167 12 N -0.308 5.308 13 C -0.005 4.005 14 C -0.191 4.191 15 N -0.187 5.187 16 C -0.072 4.072 17 C -0.057 4.057 18 C -0.148 4.148 19 C 0.090 3.910 20 F -0.109 7.109 21 C -0.134 4.134 22 C -0.299 4.299 23 S 0.398 5.602 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.198 0.802 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.411 0.896 -23.030 23.173 hybrid contribution 0.154 0.239 0.275 0.396 sum 2.565 1.135 -22.755 22.928 Atomic orbital electron populations 1.22009 0.97174 1.01029 0.99181 1.19410 0.92883 0.92675 0.87011 0.97120 1.21345 1.31729 1.12833 0.90642 0.94216 1.25798 0.97124 1.00109 0.95224 1.70032 1.47357 1.42459 0.98677 0.85797 0.79021 0.79762 0.77490 1.19400 1.22645 1.16692 1.60454 1.33227 1.32719 1.04440 1.20706 1.02416 0.92325 0.85097 1.26720 0.93567 0.99363 0.99423 1.66171 1.38934 1.10143 1.03445 1.19684 0.89237 1.02044 0.96242 1.20530 1.01917 0.93411 0.89881 1.20998 0.91017 1.01705 1.01043 1.17493 0.89472 0.96590 0.87435 1.91535 1.75566 1.82781 1.61033 1.20343 1.01204 0.99042 0.92796 1.23809 0.97526 1.06721 1.01865 1.83907 1.08392 1.49691 1.18218 0.93368 0.94710 0.92212 0.92383 0.84365 0.87853 0.91416 0.82028 0.80240 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.90 71.98 0.64 -5.04 16 2 C 0.19 8.47 2.19 44.17 0.10 8.57 16 3 H 0.01 0.49 6.86 -2.39 -0.02 0.48 16 4 C -0.53 -29.27 9.17 25.60 0.23 -29.04 16 5 H 0.04 2.45 7.86 -2.91 -0.02 2.43 16 6 C 0.02 0.88 5.45 84.66 0.46 1.34 16 7 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 8 Si 0.95 43.61 24.37 68.60 1.67 45.28 16 9 H -0.27 -11.81 6.87 99.48 0.68 -11.13 16 10 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.24 -10.10 6.53 99.48 0.65 -9.45 16 12 N -0.68 -26.58 6.29 -499.45 -3.14 -29.72 16 13 C 0.13 3.97 6.04 85.56 0.52 4.49 16 14 C 0.09 2.81 6.80 88.68 0.60 3.42 16 15 N -0.47 -14.78 10.57 -182.51 -1.93 -16.71 16 16 C 0.05 1.30 7.00 39.77 0.28 1.58 16 17 C -0.04 -0.72 10.05 22.45 0.23 -0.49 16 18 C -0.13 -1.93 9.92 21.97 0.22 -1.71 16 19 C 0.11 2.01 7.30 22.36 0.16 2.17 16 20 F -0.13 -2.28 17.27 44.97 0.78 -1.50 16 21 C -0.11 -2.16 10.05 22.44 0.23 -1.94 16 22 C -0.18 -4.39 6.56 22.94 0.15 -4.24 16 23 S 0.14 3.51 23.11 -56.49 -1.31 2.20 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 26 H 0.06 2.10 7.45 -2.39 -0.02 2.08 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.34 13.61 8.22 -89.69 -0.74 12.88 16 29 H 0.10 3.15 7.44 -2.39 -0.02 3.13 16 30 H 0.07 1.89 8.06 -2.38 -0.02 1.88 16 31 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -65.79 295.25 0.53 -65.27 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.34 Total: 13.90 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.81 Total: -20.90 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.77 Total: -104.25 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.28 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.31 Total: 2.20 kcal Total: -65.79 0.53 -65.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657903269.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.660 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds