Wall clock time and date at job start Tue Mar 31 2020 01:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46836 * 276.90521 * 3 2 1 5 5 S 1.81404 * 109.46919 * 179.97438 * 4 3 2 6 6 O 1.42091 * 110.54583 * 286.28101 * 5 4 3 7 7 O 1.42108 * 110.54060 * 63.02808 * 5 4 3 8 8 N 1.65600 * 104.45078 * 174.65240 * 5 4 3 9 9 C 1.38816 * 119.99829 * 63.30795 * 8 5 4 10 10 C 1.39801 * 119.58275 * 185.77170 * 9 8 5 11 11 C 1.38597 * 119.48808 * 179.97438 * 10 9 8 12 12 C 1.38385 * 118.68373 * 0.02562 * 11 10 9 13 13 C 1.40555 * 119.14811 * 359.97438 * 12 11 10 14 14 C 1.41319 * 119.78537 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99959 * 149.47027 * 14 13 12 16 16 C 1.40030 * 120.00101 * 329.48285 * 14 13 12 17 17 N 1.30748 * 119.99827 * 162.54448 * 16 14 13 18 18 Si 1.86794 * 119.99801 * 342.54647 * 16 14 13 19 19 H 1.48500 * 109.47259 * 95.21299 * 18 16 14 20 20 H 1.48500 * 109.47235 * 215.21389 * 18 16 14 21 21 H 1.48502 * 109.47240 * 335.21262 * 18 16 14 22 22 N 1.31959 * 119.58745 * 5.50224 * 9 8 5 23 23 H 4.44643 * 5.63367 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.46964 * 156.91120 * 3 2 1 25 25 H 1.09001 * 109.47290 * 36.90610 * 3 2 1 26 26 H 1.09001 * 109.47253 * 300.00111 * 4 3 2 27 27 H 1.08997 * 109.46855 * 60.00532 * 4 3 2 28 28 H 0.97001 * 120.00096 * 243.31532 * 8 5 4 29 29 H 1.08000 * 120.25829 * 359.97438 * 10 9 8 30 30 H 1.07999 * 120.65857 * 180.02562 * 11 10 9 31 31 H 1.08006 * 120.42905 * 179.97438 * 12 11 10 32 32 H 0.96995 * 119.99622 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1726 1.4321 5 16 4.9701 -0.1725 1.4321 6 8 5.4688 -1.3956 0.9084 7 8 5.4686 1.0774 0.9753 8 7 5.3834 -0.2158 3.0351 9 6 5.0337 -1.3114 3.8126 10 6 5.2786 -1.2873 5.1888 11 6 4.9282 -2.3820 5.9633 12 6 4.3429 -3.4730 5.3451 13 6 4.1225 -3.4368 3.9574 14 6 3.5262 -4.5438 3.3123 15 1 2.9176 -4.3928 2.4329 16 6 3.7242 -5.8363 3.8132 17 7 2.9270 -6.8071 3.4507 18 14 5.1273 -6.1734 4.9994 19 1 4.6250 -6.0970 6.3948 20 1 5.6761 -7.5295 4.7444 21 1 6.1963 -5.1617 4.8020 22 7 4.4695 -2.3602 3.2443 23 1 -1.0499 0.0002 0.0001 24 1 3.0089 0.9461 -0.4030 25 1 3.0097 -0.8209 -0.6171 26 1 2.7923 0.6490 2.0492 27 1 2.7931 -1.1180 1.8351 28 1 5.8697 0.5243 3.4307 29 1 5.7372 -0.4225 5.6449 30 1 5.1083 -2.3835 7.0282 31 1 4.0590 -4.3411 5.9215 32 1 3.0644 -7.7025 3.7974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664477998.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:06 Heat of formation + Delta-G solvation = 10.499637 kcal Electronic energy + Delta-G solvation = -19372.542050 eV Core-core repulsion = 16233.728299 eV Total energy + Delta-G solvation = -3138.813751 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.00725 -36.75673 -35.61791 -35.18931 -35.05176 -33.40340 -31.31239 -30.98816 -29.45239 -25.77188 -24.60867 -22.29465 -21.63479 -19.02170 -18.38541 -18.34011 -17.16492 -16.44717 -16.09152 -15.73944 -15.37049 -14.82021 -14.47125 -14.34678 -13.95678 -13.37217 -13.11135 -12.94657 -12.63657 -12.06336 -11.98644 -11.83744 -11.76513 -11.60339 -11.43196 -11.13549 -10.75017 -10.52422 -10.41484 -10.14520 -10.12323 -10.01626 -9.39018 -8.70934 -8.26500 -7.48260 -7.11615 -4.78058 0.50529 2.32633 2.44132 2.75520 2.85742 2.92177 3.00749 3.13988 3.23011 3.86132 3.97928 4.33043 4.39232 4.56994 4.74498 5.00316 5.05533 5.27955 5.39587 5.64183 5.76849 5.95893 6.04896 6.08153 6.30662 6.33948 6.59531 6.95041 7.09320 7.27720 7.35576 7.62470 7.67369 8.17529 8.30708 8.53547 9.31286 9.89333 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.006467 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.548485 B = 4328.409655 C = 5190.568015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.001 3.999 4 C -0.620 4.620 5 S 2.616 3.384 6 O -0.917 6.917 7 O -0.972 6.972 8 N -1.036 6.036 9 C 0.394 3.606 10 C -0.322 4.322 11 C -0.021 4.021 12 C -0.300 4.300 13 C 0.288 3.712 14 C -0.412 4.412 15 H 0.101 0.899 16 C 0.089 3.911 17 N -0.790 5.790 18 Si 0.915 3.085 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.245 1.245 22 N -0.582 5.582 23 H 0.219 0.781 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.155 0.845 28 H 0.425 0.575 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 9.925 -0.087 9.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.177 4.177 3 C -0.037 4.037 4 C -0.749 4.749 5 S 2.709 3.291 6 O -0.907 6.907 7 O -0.963 6.963 8 N -0.784 5.784 9 C 0.157 3.843 10 C -0.349 4.349 11 C -0.046 4.046 12 C -0.323 4.323 13 C 0.163 3.837 14 C -0.443 4.443 15 H 0.119 0.881 16 C -0.134 4.134 17 N -0.413 5.413 18 Si 0.741 3.259 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.168 1.168 22 N -0.304 5.304 23 H 0.236 0.764 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.260 0.740 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.221 9.547 -1.847 9.727 hybrid contribution 0.076 0.039 2.120 2.121 sum -0.144 9.586 0.273 9.591 Atomic orbital electron populations 1.24855 0.95846 1.01048 1.00226 1.22582 0.93880 1.00493 1.00762 1.18330 0.87089 1.04265 0.94007 1.30567 1.27041 1.13303 1.04004 1.04927 0.77361 0.74033 0.72811 1.93656 1.75905 1.44865 1.76245 1.93580 1.78354 1.45285 1.79059 1.53273 1.68285 1.26270 1.30610 1.17928 0.92637 0.85744 0.87967 1.20696 1.19622 1.02220 0.92408 1.20810 0.93193 0.92515 0.98043 1.21794 1.13681 1.00652 0.96176 1.18125 0.87557 0.89577 0.88440 1.19221 1.24488 0.88642 1.11965 0.88070 1.26110 0.96421 0.95629 0.95228 1.69604 1.32285 1.02846 1.36609 0.86264 0.82180 0.77925 0.79569 1.19346 1.21379 1.16843 1.67626 1.22693 1.01920 1.38195 0.76420 0.88362 0.87912 0.85381 0.82683 0.74021 0.87459 0.87274 0.86940 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 19.25 29.55 0.57 -1.99 16 2 C -0.18 -2.50 13.34 -37.12 -0.50 -3.00 16 3 C 0.00 0.01 5.71 -29.51 -0.17 -0.16 16 4 C -0.62 -9.16 5.80 37.16 0.22 -8.94 16 5 S 2.62 43.66 5.10 -107.50 -0.55 43.11 16 6 O -0.92 -19.44 16.93 -57.54 -0.97 -20.42 16 7 O -0.97 -16.45 18.08 -57.54 -1.04 -17.49 16 8 N -1.04 -17.15 5.73 31.15 0.18 -16.97 16 9 C 0.39 8.10 7.22 -155.33 -1.12 6.98 16 10 C -0.32 -6.17 9.95 -38.86 -0.39 -6.56 16 11 C -0.02 -0.42 10.15 -39.39 -0.40 -0.82 16 12 C -0.30 -6.86 7.16 -38.65 -0.28 -7.13 16 13 C 0.29 7.23 5.94 -85.00 -0.50 6.72 16 14 C -0.41 -10.94 9.79 -37.74 -0.37 -11.31 16 15 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16 16 C 0.09 2.24 5.40 -17.34 -0.09 2.14 16 17 N -0.79 -20.06 13.92 55.55 0.77 -19.29 16 18 Si 0.91 20.02 24.50 -169.99 -4.16 15.86 16 19 H -0.27 -5.51 6.71 56.52 0.38 -5.14 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.25 -5.64 6.85 56.52 0.39 -5.26 16 22 N -0.58 -13.86 7.53 -10.33 -0.08 -13.93 16 23 H 0.22 1.90 7.80 -54.09 -0.42 1.48 16 24 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 27 H 0.16 2.67 7.25 -51.93 -0.38 2.29 16 28 H 0.42 5.49 8.78 -34.47 -0.30 5.19 16 29 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.11 2.50 4.74 -52.48 -0.25 2.25 16 32 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -32.06 297.64 -7.46 -39.52 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -3.06 Total: 9.19 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -3.03 Total: -24.05 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.87 Total: -50.20 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -2.01 Total: -37.91 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.16 Total: 15.86 kcal Atomic # 16 Polarization: 43.66 SS G_CDS: -0.55 Total: 43.11 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.06 -7.46 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664477998.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.015 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds