Wall clock time and date at job start Tue Mar 31 2020 01:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46836 * 276.90521 * 3 2 1 5 5 S 1.81404 * 109.46919 * 179.97438 * 4 3 2 6 6 O 1.42091 * 110.54583 * 286.28101 * 5 4 3 7 7 O 1.42108 * 110.54060 * 63.02808 * 5 4 3 8 8 N 1.65600 * 104.45078 * 174.65240 * 5 4 3 9 9 C 1.38816 * 119.99829 * 63.30795 * 8 5 4 10 10 C 1.39801 * 119.58275 * 185.77170 * 9 8 5 11 11 C 1.38597 * 119.48808 * 179.97438 * 10 9 8 12 12 C 1.38385 * 118.68373 * 0.02562 * 11 10 9 13 13 C 1.40555 * 119.14811 * 359.97438 * 12 11 10 14 14 C 1.41319 * 119.78537 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99959 * 149.47027 * 14 13 12 16 16 C 1.40030 * 120.00101 * 329.48285 * 14 13 12 17 17 N 1.30748 * 119.99827 * 162.54448 * 16 14 13 18 18 Si 1.86794 * 119.99801 * 342.54647 * 16 14 13 19 19 H 1.48500 * 109.47259 * 95.21299 * 18 16 14 20 20 H 1.48500 * 109.47235 * 215.21389 * 18 16 14 21 21 H 1.48502 * 109.47240 * 335.21262 * 18 16 14 22 22 N 1.31959 * 119.58745 * 5.50224 * 9 8 5 23 23 H 4.44643 * 5.63367 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.46964 * 156.91120 * 3 2 1 25 25 H 1.09001 * 109.47290 * 36.90610 * 3 2 1 26 26 H 1.09001 * 109.47253 * 300.00111 * 4 3 2 27 27 H 1.08997 * 109.46855 * 60.00532 * 4 3 2 28 28 H 0.97001 * 120.00096 * 243.31532 * 8 5 4 29 29 H 1.08000 * 120.25829 * 359.97438 * 10 9 8 30 30 H 1.07999 * 120.65857 * 180.02562 * 11 10 9 31 31 H 1.08006 * 120.42905 * 179.97438 * 12 11 10 32 32 H 0.96995 * 119.99622 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1726 1.4321 5 16 4.9701 -0.1725 1.4321 6 8 5.4688 -1.3956 0.9084 7 8 5.4686 1.0774 0.9753 8 7 5.3834 -0.2158 3.0351 9 6 5.0337 -1.3114 3.8126 10 6 5.2786 -1.2873 5.1888 11 6 4.9282 -2.3820 5.9633 12 6 4.3429 -3.4730 5.3451 13 6 4.1225 -3.4368 3.9574 14 6 3.5262 -4.5438 3.3123 15 1 2.9176 -4.3928 2.4329 16 6 3.7242 -5.8363 3.8132 17 7 2.9270 -6.8071 3.4507 18 14 5.1273 -6.1734 4.9994 19 1 4.6250 -6.0970 6.3948 20 1 5.6761 -7.5295 4.7444 21 1 6.1963 -5.1617 4.8020 22 7 4.4695 -2.3602 3.2443 23 1 -1.0499 0.0002 0.0001 24 1 3.0089 0.9461 -0.4030 25 1 3.0097 -0.8209 -0.6171 26 1 2.7923 0.6490 2.0492 27 1 2.7931 -1.1180 1.8351 28 1 5.8697 0.5243 3.4307 29 1 5.7372 -0.4225 5.6449 30 1 5.1083 -2.3835 7.0282 31 1 4.0590 -4.3411 5.9215 32 1 3.0644 -7.7025 3.7974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664477998.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:05 Heat of formation + Delta-G solvation = -13.079085 kcal Electronic energy + Delta-G solvation = -19373.564500 eV Core-core repulsion = 16233.728299 eV Total energy + Delta-G solvation = -3139.836201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69726 -38.19471 -37.10754 -36.68531 -36.25646 -35.15247 -32.99268 -32.09968 -31.17338 -27.51925 -25.77843 -23.94341 -23.34551 -20.48570 -20.02732 -19.48511 -18.48695 -18.07971 -17.49409 -17.35734 -16.72900 -16.50957 -16.08396 -15.69915 -15.16173 -14.93713 -14.71727 -14.27968 -14.18409 -13.67355 -13.48445 -13.29744 -13.14606 -13.09820 -12.99580 -12.85820 -12.33400 -12.15030 -11.90757 -11.76307 -11.27605 -11.16993 -11.11045 -10.40492 -9.97900 -9.15793 -8.95674 -6.69148 -0.85580 0.61360 0.78057 1.26175 1.41767 1.47770 1.49733 1.75479 1.82665 2.10317 2.51823 2.68203 3.22972 3.34492 3.42665 3.57598 3.72649 3.83906 4.25534 4.28023 4.54474 4.60027 4.63400 4.67377 4.81483 5.03449 5.06612 5.23015 5.52053 5.67536 5.79728 5.96243 6.23490 6.49181 6.60947 6.68035 7.57280 8.12445 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.006467 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.548485 B = 4328.409655 C = 5190.568015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.222 4.222 3 C -0.008 4.008 4 C -0.604 4.604 5 S 2.629 3.371 6 O -0.969 6.969 7 O -0.972 6.972 8 N -1.024 6.024 9 C 0.380 3.620 10 C -0.300 4.300 11 C -0.017 4.017 12 C -0.318 4.318 13 C 0.274 3.726 14 C -0.459 4.459 15 H 0.058 0.942 16 C 0.055 3.945 17 N -0.832 5.832 18 Si 0.969 3.031 19 H -0.241 1.241 20 H -0.276 1.276 21 H -0.263 1.263 22 N -0.607 5.607 23 H 0.252 0.748 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.156 0.844 27 H 0.129 0.871 28 H 0.443 0.557 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.116 0.884 32 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 12.232 2.207 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.223 4.223 3 C -0.045 4.045 4 C -0.736 4.736 5 S 2.724 3.276 6 O -0.958 6.958 7 O -0.962 6.962 8 N -0.775 5.775 9 C 0.143 3.857 10 C -0.326 4.326 11 C -0.041 4.041 12 C -0.340 4.340 13 C 0.148 3.852 14 C -0.491 4.491 15 H 0.076 0.924 16 C -0.163 4.163 17 N -0.458 5.458 18 Si 0.791 3.209 19 H -0.165 1.165 20 H -0.202 1.202 21 H -0.187 1.187 22 N -0.330 5.330 23 H 0.269 0.731 24 H 0.143 0.857 25 H 0.118 0.882 26 H 0.174 0.826 27 H 0.147 0.853 28 H 0.282 0.718 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.134 0.866 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.582 11.896 0.453 11.919 hybrid contribution -0.177 -0.363 1.383 1.441 sum 0.405 11.533 1.836 11.686 Atomic orbital electron populations 1.25779 0.96813 0.99382 0.98253 1.22960 0.94647 1.02152 1.02589 1.18473 0.87384 1.05668 0.93023 1.30376 1.24519 1.13008 1.05666 1.04389 0.77922 0.72857 0.72394 1.93604 1.77730 1.47157 1.77347 1.93572 1.78964 1.44645 1.79032 1.53069 1.68404 1.25846 1.30153 1.18281 0.92253 0.85819 0.89331 1.21316 1.16550 1.03185 0.91522 1.21352 0.91243 0.91122 1.00407 1.21904 1.14762 1.02245 0.95091 1.18210 0.87729 0.89526 0.89714 1.19154 1.27131 0.90708 1.12153 0.92358 1.26763 0.98105 0.94835 0.96606 1.69626 1.33930 1.03554 1.38668 0.85456 0.78809 0.77536 0.79059 1.16533 1.20232 1.18699 1.67552 1.23212 1.02764 1.39455 0.73132 0.85702 0.88240 0.82572 0.85303 0.71824 0.82764 0.82662 0.86616 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.42 19.25 74.32 1.43 -2.99 16 2 C -0.22 -6.20 13.34 31.13 0.42 -5.78 16 3 C -0.01 -0.20 5.71 28.79 0.16 -0.04 16 4 C -0.60 -17.65 5.80 71.98 0.42 -17.23 16 5 S 2.63 86.22 5.10 -56.49 -0.29 85.93 16 6 O -0.97 -42.23 16.93 -127.65 -2.16 -44.40 16 7 O -0.97 -31.25 18.08 -127.65 -2.31 -33.56 16 8 N -1.02 -31.68 5.73 -55.37 -0.32 -32.00 16 9 C 0.38 14.87 7.22 133.42 0.96 15.83 16 10 C -0.30 -10.11 9.95 22.73 0.23 -9.88 16 11 C -0.02 -0.59 10.15 22.39 0.23 -0.37 16 12 C -0.32 -14.02 7.16 22.87 0.16 -13.85 16 13 C 0.27 14.06 5.94 40.18 0.24 14.30 16 14 C -0.46 -26.00 9.79 23.46 0.23 -25.77 16 15 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 16 C 0.05 2.88 5.40 85.29 0.46 3.34 16 17 N -0.83 -44.38 13.92 21.84 0.30 -44.07 16 18 Si 0.97 41.35 24.50 68.60 1.68 43.03 16 19 H -0.24 -9.15 6.71 99.48 0.67 -8.48 16 20 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.26 -11.82 6.85 99.48 0.68 -11.14 16 22 N -0.61 -29.27 7.53 -186.59 -1.40 -30.67 16 23 H 0.25 3.73 7.80 -4.42 -0.03 3.70 16 24 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.16 3.57 8.14 -2.39 -0.02 3.55 16 27 H 0.13 4.61 7.25 -2.39 -0.02 4.60 16 28 H 0.44 9.89 8.78 -96.74 -0.85 9.04 16 29 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.12 4.96 4.74 -2.91 -0.01 4.95 16 32 H 0.30 14.15 8.29 -92.71 -0.77 13.38 16 Total: -1.00 -73.03 297.64 0.69 -72.34 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.24 Total: 25.83 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 4.94 Total: -42.44 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -1.42 Total: -106.74 kcal Atomic # 8 Polarization: -73.49 SS G_CDS: -4.47 Total: -77.96 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.68 Total: 43.03 kcal Atomic # 16 Polarization: 86.22 SS G_CDS: -0.29 Total: 85.93 kcal Total: -73.03 0.69 -72.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664477998.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.263 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds