Wall clock time and date at job start Tue Mar 31 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 120.00071 * 2 1 4 4 H 1.48496 * 109.47172 * 269.99600 * 3 2 1 5 5 H 1.48500 * 109.46776 * 29.99822 * 3 2 1 6 6 H 1.48501 * 109.47254 * 149.99398 * 3 2 1 7 7 C 1.39938 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99937 * 196.78656 * 7 2 1 9 9 C 1.41409 * 119.99673 * 16.78906 * 7 2 1 10 10 C 1.40772 * 120.21454 * 25.16717 * 9 7 2 11 11 C 1.37641 * 119.89183 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.31195 * 0.02562 * 11 10 9 13 13 C 1.39242 * 120.43547 * 359.95719 * 12 11 10 14 14 N 1.39954 * 119.94844 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99930 * 145.77338 * 14 13 12 16 16 O 1.21586 * 120.00005 * 354.85081 * 15 14 13 17 17 N 1.34781 * 119.99928 * 174.84498 * 15 14 13 18 18 C 1.46501 * 119.99678 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.46846 * 180.02562 * 18 17 15 20 20 C 1.31157 * 119.99667 * 125.27542 * 19 18 17 21 21 Cl 1.73599 * 120.00509 * 359.72544 * 20 19 18 22 22 C 1.38279 * 120.10505 * 0.27530 * 13 12 11 23 23 H 0.96999 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.08005 * 120.05649 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.84455 * 179.97438 * 11 10 9 26 26 H 1.08006 * 119.78251 * 179.97438 * 12 11 10 27 27 H 0.96996 * 120.00365 * 325.77174 * 14 13 12 28 28 H 0.97001 * 120.00259 * 0.02562 * 17 15 14 29 29 H 1.09004 * 109.46914 * 60.00404 * 18 17 15 30 30 H 1.08997 * 109.47456 * 300.00355 * 18 17 15 31 31 H 1.08000 * 120.00000 * 305.00417 * 19 18 17 32 32 H 1.08004 * 119.99530 * 179.72372 * 20 19 18 33 33 H 1.07993 * 120.16038 * 179.74442 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0463 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2707 9 6 1.3461 -2.4106 -0.3527 10 6 0.2108 -2.3743 -1.1842 11 6 -0.4280 -3.5451 -1.5242 12 6 0.0406 -4.7601 -1.0516 13 6 1.1626 -4.8114 -0.2286 14 7 1.6270 -6.0444 0.2435 15 6 2.9487 -6.2466 0.4130 16 8 3.7434 -5.3935 0.0682 17 7 3.3894 -7.3946 0.9648 18 6 4.8261 -7.6141 1.1494 19 6 5.0509 -8.9642 1.7805 20 6 5.8457 -9.8334 1.2036 21 17 6.6333 -9.4317 -0.2904 22 6 1.8151 -3.6456 0.1280 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1579 -1.4295 -1.5554 25 1 -1.2992 -3.5164 -2.1618 26 1 -0.4675 -5.6736 -1.3234 27 1 0.9976 -6.7533 0.4489 28 1 2.7555 -8.0754 1.2396 29 1 5.2319 -6.8375 1.7978 30 1 5.3266 -7.5779 0.1819 31 1 4.5609 -9.2141 2.7099 32 1 6.0103 -10.7993 1.6582 33 1 2.6830 -3.6840 0.7696 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671463898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:35 Heat of formation + Delta-G solvation = -17.838231 kcal Electronic energy + Delta-G solvation = -18450.610819 eV Core-core repulsion = 15308.524540 eV Total energy + Delta-G solvation = -3142.086279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43080 -39.22168 -37.96184 -36.54228 -36.05118 -34.85806 -33.40858 -31.73162 -29.90784 -27.31703 -26.91964 -23.35516 -22.70192 -21.79461 -21.11745 -19.59478 -19.19827 -17.79953 -17.22727 -17.00296 -16.48739 -16.24502 -15.87316 -15.63159 -14.95421 -14.81626 -14.63837 -13.98504 -13.84886 -13.48957 -13.22397 -12.97635 -12.90276 -12.78829 -12.76639 -12.17054 -12.00209 -11.61970 -11.55025 -11.26554 -10.99621 -10.79555 -10.34237 -9.98300 -9.37595 -8.71453 -8.57253 -6.35768 0.72592 0.94922 1.05118 1.36551 1.40070 1.49875 1.50738 1.83893 2.18591 2.22184 2.75651 3.36025 3.69482 3.76029 4.20544 4.48981 4.53175 4.65802 4.70436 5.05654 5.07730 5.11023 5.14214 5.20403 5.23842 5.34360 5.44126 5.74040 5.84630 6.07460 6.12895 6.20729 6.38305 6.70372 6.95807 7.02737 7.11837 7.60060 8.34599 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.003482 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.767615 B = 8039.326917 C = 8769.886070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.090 3.910 10 C -0.200 4.200 11 C -0.090 4.090 12 C -0.251 4.251 13 C 0.176 3.824 14 N -0.669 5.669 15 C 0.693 3.307 16 O -0.620 6.620 17 N -0.720 5.720 18 C 0.149 3.851 19 C -0.155 4.155 20 C -0.081 4.081 21 Cl -0.115 7.115 22 C -0.238 4.238 23 H 0.289 0.711 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.419 0.581 28 H 0.416 0.584 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.176 0.824 32 H 0.190 0.810 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -18.886 4.317 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.220 4.220 11 C -0.109 4.109 12 C -0.272 4.272 13 C 0.082 3.918 14 N -0.317 5.317 15 C 0.393 3.607 16 O -0.499 6.499 17 N -0.378 5.378 18 C 0.025 3.975 19 C -0.174 4.174 20 C -0.126 4.126 21 Cl -0.087 7.087 22 C -0.260 4.260 23 H 0.100 0.900 24 H 0.122 0.878 25 H 0.142 0.858 26 H 0.151 0.849 27 H 0.257 0.743 28 H 0.253 0.747 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.193 0.807 32 H 0.207 0.793 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.539 -17.992 3.944 19.235 hybrid contribution -0.044 0.401 0.189 0.446 sum 5.495 -17.591 4.133 18.887 Atomic orbital electron populations 1.69857 1.08665 1.30524 1.35727 1.26682 0.95608 1.04148 0.91188 0.85227 0.78903 0.76021 0.79644 1.18479 1.18454 1.18987 1.19743 0.97464 0.92787 1.43423 0.92099 1.17817 0.91933 0.92308 0.89195 1.21307 1.00091 0.97645 1.02910 1.20829 0.98903 0.92110 0.99035 1.20443 1.01701 0.98108 1.06975 1.17291 0.95362 0.83414 0.95726 1.42302 1.05812 1.14894 1.68714 1.16210 0.82543 0.82973 0.78937 1.90964 1.55555 1.46169 1.57233 1.44771 1.08663 1.18115 1.66273 1.20416 0.80192 0.95907 1.00968 1.23263 0.99829 0.92966 1.01341 1.25133 0.97759 1.01828 0.87884 1.98399 1.80003 1.94053 1.36208 1.20950 1.04578 0.92298 1.08171 0.89997 0.87760 0.85775 0.84946 0.74347 0.74711 0.91726 0.91742 0.80680 0.79332 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.50 10.94 21.83 0.24 -44.26 16 2 C 0.04 2.07 5.16 85.25 0.44 2.51 16 3 Si 0.98 40.88 29.59 68.60 2.03 42.91 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.50 -30.02 9.05 23.46 0.21 -29.81 16 8 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 9 C 0.09 5.33 5.57 -21.31 -0.12 5.21 16 10 C -0.20 -10.95 8.69 22.75 0.20 -10.75 16 11 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 12 C -0.25 -10.68 9.97 22.58 0.23 -10.45 16 13 C 0.18 8.12 6.25 38.09 0.24 8.36 16 14 N -0.67 -23.48 5.34 -317.32 -1.70 -25.18 16 15 C 0.69 25.59 8.29 179.05 1.48 27.07 16 16 O -0.62 -30.42 14.10 -3.99 -0.06 -30.48 16 17 N -0.72 -17.40 5.55 -482.28 -2.68 -20.07 16 18 C 0.15 3.37 5.97 85.63 0.51 3.89 16 19 C -0.16 -1.87 9.64 25.49 0.25 -1.62 16 20 C -0.08 -0.91 10.82 67.62 0.73 -0.18 16 21 Cl -0.11 -2.13 26.97 -2.72 -0.07 -2.21 16 22 C -0.24 -13.25 8.39 22.85 0.19 -13.06 16 23 H 0.29 14.00 8.30 -92.71 -0.77 13.24 16 24 H 0.10 5.91 6.17 -2.91 -0.02 5.89 16 25 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 26 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.42 10.32 8.84 -92.71 -0.82 9.50 16 28 H 0.42 6.32 8.48 -92.71 -0.79 5.54 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.75 6.00 -2.39 -0.01 1.74 16 31 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.08 4.87 6.48 -2.91 -0.02 4.85 16 Total: -1.00 -76.40 304.16 1.90 -74.50 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.44 Total: 27.60 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.58 Total: -22.80 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -4.14 Total: -89.51 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.06 Total: -30.48 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.07 Total: -2.21 kcal Total: -76.40 1.90 -74.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671463898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.659 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds