Wall clock time and date at job start Tue Mar 31 2020 01:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47322 * 269.99897 * 3 2 1 5 5 H 1.48497 * 109.47077 * 29.99986 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99936 * 3 2 1 7 7 C 1.39925 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99752 * 196.78323 * 7 2 1 9 9 C 1.41401 * 120.00441 * 16.78611 * 7 2 1 10 10 C 1.40781 * 120.20820 * 25.16279 * 9 7 2 11 11 C 1.37643 * 119.88558 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.31866 * 0.02562 * 11 10 9 13 13 C 1.39237 * 120.43001 * 359.97438 * 12 11 10 14 14 N 1.39959 * 119.94533 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99830 * 145.77392 * 14 13 12 16 16 O 1.21584 * 120.00052 * 354.85485 * 15 14 13 17 17 N 1.34776 * 119.99946 * 174.57202 * 15 14 13 18 18 C 1.46501 * 119.99994 * 180.27592 * 17 15 14 19 19 C 1.50700 * 109.46810 * 180.02562 * 18 17 15 20 20 C 1.31162 * 119.99595 * 125.00402 * 19 18 17 21 21 Cl 1.73603 * 119.99935 * 179.97438 * 20 19 18 22 22 C 1.38279 * 120.10901 * 0.25248 * 13 12 11 23 23 H 0.97007 * 120.00093 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.05793 * 0.02601 * 10 9 7 25 25 H 1.08001 * 119.84253 * 180.02562 * 11 10 9 26 26 H 1.08000 * 119.78432 * 180.02562 * 12 11 10 27 27 H 0.96998 * 120.00318 * 325.77854 * 14 13 12 28 28 H 0.97000 * 119.99652 * 0.27841 * 17 15 14 29 29 H 1.08995 * 109.47105 * 300.00061 * 18 17 15 30 30 H 1.08997 * 109.46960 * 60.00540 * 18 17 15 31 31 H 1.08002 * 120.00572 * 305.00044 * 19 18 17 32 32 H 1.07996 * 120.00394 * 0.02562 * 20 19 18 33 33 H 1.08001 * 120.15819 * 179.72726 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3526 10 6 0.2106 -2.3743 -1.1840 11 6 -0.4287 -3.5450 -1.5231 12 6 0.0394 -4.7600 -1.0497 13 6 1.1612 -4.8112 -0.2265 14 7 1.6250 -6.0440 0.2464 15 6 2.9467 -6.2467 0.4162 16 8 3.7417 -5.3940 0.0711 17 7 3.3866 -7.3921 0.9738 18 6 4.8228 -7.6098 1.1639 19 6 5.0467 -8.9571 1.8007 20 6 5.8399 -9.8300 1.2270 21 17 6.0983 -11.3819 1.9609 22 6 1.8144 -3.6454 0.1291 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1581 -1.4295 -1.5551 25 1 -1.2995 -3.5165 -2.1614 26 1 -0.4687 -5.6734 -1.3215 27 1 0.9954 -6.7527 0.4520 28 1 2.7523 -8.0723 1.2492 29 1 5.3263 -7.5769 0.1977 30 1 5.2260 -6.8304 1.8105 31 1 4.5540 -9.2040 2.7296 32 1 6.3329 -9.5831 0.2984 33 1 2.6820 -3.6838 0.7711 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671463911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:38 Heat of formation + Delta-G solvation = -19.622184 kcal Electronic energy + Delta-G solvation = -18266.148420 eV Core-core repulsion = 15123.984783 eV Total energy + Delta-G solvation = -3142.163637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43159 -39.21058 -37.85495 -36.71735 -36.07337 -34.86014 -33.44984 -31.72495 -29.88716 -27.29222 -26.82795 -23.33432 -22.69424 -21.83503 -21.25015 -19.58364 -19.22520 -17.74957 -17.19084 -16.95580 -16.48695 -16.25740 -15.87422 -15.59456 -14.90131 -14.78730 -14.63039 -14.02810 -13.93422 -13.48830 -13.28673 -12.98076 -12.90076 -12.76225 -12.64321 -12.16591 -11.99727 -11.83027 -11.54447 -11.26191 -10.99221 -10.79150 -10.38758 -10.00363 -9.36987 -8.70911 -8.56679 -6.34929 0.68449 0.95209 1.05535 1.24547 1.37268 1.50495 1.51304 1.87332 2.18594 2.22565 2.76318 3.36379 3.76601 3.86327 3.98469 4.41077 4.49615 4.62013 4.66607 5.06786 5.09989 5.12378 5.14944 5.20541 5.24371 5.34830 5.43124 5.73920 5.85046 6.07926 6.13570 6.20458 6.38796 6.71096 6.96526 7.03218 7.10374 7.59378 8.35142 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029491 B = 0.003008 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.214666 B = 9305.135517 C =10114.717141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.089 3.911 10 C -0.200 4.200 11 C -0.091 4.091 12 C -0.251 4.251 13 C 0.177 3.823 14 N -0.669 5.669 15 C 0.695 3.305 16 O -0.618 6.618 17 N -0.724 5.724 18 C 0.174 3.826 19 C -0.152 4.152 20 C -0.080 4.080 21 Cl -0.094 7.094 22 C -0.236 4.236 23 H 0.289 0.711 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.419 0.581 28 H 0.415 0.585 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.163 0.837 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -17.717 3.134 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.220 4.220 11 C -0.109 4.109 12 C -0.273 4.273 13 C 0.083 3.917 14 N -0.318 5.318 15 C 0.395 3.605 16 O -0.497 6.497 17 N -0.382 5.382 18 C 0.050 3.950 19 C -0.171 4.171 20 C -0.125 4.125 21 Cl -0.065 7.065 22 C -0.258 4.258 23 H 0.100 0.900 24 H 0.122 0.878 25 H 0.142 0.858 26 H 0.150 0.850 27 H 0.256 0.744 28 H 0.252 0.748 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.180 0.820 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.866 -16.992 2.948 18.216 hybrid contribution -0.135 0.199 0.399 0.465 sum 5.731 -16.793 3.347 18.057 Atomic orbital electron populations 1.69861 1.08682 1.30496 1.35799 1.26687 0.95607 1.04188 0.91238 0.85224 0.78918 0.76026 0.79621 1.18493 1.18606 1.18907 1.19730 0.97474 0.92702 1.43291 0.91997 1.17833 0.91950 0.92385 0.89224 1.21309 1.00099 0.97621 1.02926 1.20832 0.98900 0.92147 0.99069 1.20446 1.01743 0.98074 1.06996 1.17269 0.95340 0.83406 0.95698 1.42320 1.05903 1.14912 1.68660 1.16162 0.82532 0.82858 0.78912 1.90967 1.55439 1.46002 1.57308 1.44829 1.08860 1.18462 1.66065 1.20055 0.80108 0.94324 1.00552 1.23018 0.99794 0.93347 1.00985 1.24675 1.01676 0.86212 0.99948 1.98389 1.95769 1.29350 1.83028 1.20944 1.04606 0.92215 1.08083 0.90036 0.87807 0.85850 0.84979 0.74371 0.74792 0.91146 0.90982 0.84132 0.81985 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.20 10.94 21.82 0.24 -43.96 16 2 C 0.04 1.99 5.16 85.25 0.44 2.43 16 3 Si 0.98 40.40 29.59 68.60 2.03 42.43 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.50 -29.45 9.05 23.46 0.21 -29.23 16 8 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 9 C 0.09 5.17 5.57 -21.31 -0.12 5.05 16 10 C -0.20 -10.82 8.69 22.75 0.20 -10.63 16 11 C -0.09 -4.15 10.02 22.20 0.22 -3.93 16 12 C -0.25 -10.50 9.97 22.58 0.23 -10.27 16 13 C 0.18 7.96 6.25 38.09 0.24 8.20 16 14 N -0.67 -22.71 5.34 -317.33 -1.70 -24.40 16 15 C 0.69 24.32 8.29 179.05 1.48 25.81 16 16 O -0.62 -28.78 14.10 -3.98 -0.06 -28.83 16 17 N -0.72 -16.20 5.55 -482.30 -2.68 -18.88 16 18 C 0.17 3.39 6.11 85.63 0.52 3.92 16 19 C -0.15 -1.96 9.36 25.48 0.24 -1.72 16 20 C -0.08 -0.97 10.43 67.62 0.71 -0.27 16 21 Cl -0.09 -1.28 29.10 -2.72 -0.08 -1.36 16 22 C -0.24 -12.89 8.39 22.85 0.19 -12.70 16 23 H 0.29 13.90 8.30 -92.70 -0.77 13.13 16 24 H 0.10 5.83 6.17 -2.91 -0.02 5.81 16 25 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 27 H 0.42 9.97 8.84 -92.71 -0.82 9.15 16 28 H 0.42 6.08 8.48 -92.71 -0.79 5.29 16 29 H 0.07 1.46 7.79 -2.39 -0.02 1.44 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.16 1.59 7.84 -2.91 -0.02 1.57 16 33 H 0.08 4.84 6.48 -2.91 -0.02 4.82 16 Total: -1.00 -72.27 307.34 1.87 -70.40 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.45 Total: 27.96 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 4.56 Total: -23.35 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -4.14 Total: -87.24 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.06 Total: -28.83 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -72.27 1.87 -70.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671463911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.775 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds