Wall clock time and date at job start Tue Mar 31 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.38019 * 119.99780 * 180.27959 * 3 2 1 5 5 N 1.32924 * 120.00416 * 359.72118 * 4 3 2 6 6 C 1.32988 * 119.97748 * 180.02562 * 5 4 3 7 7 S 1.76201 * 120.01033 * 179.97438 * 6 5 4 8 8 C 1.81003 * 99.99893 * 179.97438 * 7 6 5 9 9 N 1.33034 * 119.97813 * 0.02562 * 6 5 4 10 10 C 1.32826 * 120.00067 * 359.97438 * 9 6 5 11 11 N 1.38709 * 119.98722 * 180.02562 * 10 9 6 12 12 C 1.35496 * 119.99922 * 179.97438 * 11 10 9 13 13 N 6.78332 * 111.05268 * 359.79628 * 2 1 3 14 14 C 1.37204 * 119.99957 * 359.97438 * 11 10 9 15 15 H 1.08002 * 120.00097 * 0.02562 * 14 11 10 16 16 C 1.38856 * 120.00224 * 179.97438 * 14 11 10 17 17 N 1.31445 * 119.99770 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00164 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47106 * 120.00368 * 18 16 14 21 21 H 1.48503 * 109.46646 * 240.00061 * 18 16 14 22 22 N 1.32895 * 120.02536 * 359.72628 * 10 9 6 23 23 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 24 24 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 26 26 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 27 27 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 28 28 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47095 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.47022 * 299.99801 * 8 7 6 31 31 H 1.09001 * 109.47098 * 59.99970 * 8 7 6 32 32 H 0.97003 * 120.00207 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3753 1.6333 -0.0058 5 7 4.2391 0.6230 -0.0058 6 6 5.5465 0.8666 -0.0110 7 16 6.6923 -0.4720 -0.0103 8 6 8.2509 0.4484 -0.0193 9 7 5.9890 2.1212 -0.0155 10 6 5.1250 3.1301 -0.0155 11 7 5.5866 4.4381 -0.0208 12 6 4.7055 5.4675 -0.0213 13 7 3.9668 6.3305 -0.0225 14 6 6.9354 4.6896 -0.0256 15 1 7.6377 3.8691 -0.0256 16 6 7.3976 5.9989 -0.0314 17 7 6.5428 6.9976 -0.0319 18 14 9.2340 6.3413 -0.0386 19 1 9.9771 5.0557 -0.0361 20 1 9.5883 7.1162 -1.2547 21 1 9.5962 7.1242 1.1702 22 7 3.8185 2.8868 -0.0164 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.3880 2.1185 -0.0004 29 1 9.0862 -0.2517 -0.0193 30 1 8.2992 1.0724 -0.9118 31 1 8.3057 1.0788 0.8683 32 1 6.8656 7.9123 -0.0364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000495699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:36 Heat of formation + Delta-G solvation = 121.350580 kcal Electronic energy + Delta-G solvation = -19110.044432 eV Core-core repulsion = 16040.623041 eV Total energy + Delta-G solvation = -3069.421391 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64173 -37.61666 -36.24575 -33.75863 -33.09107 -32.65989 -31.07772 -29.66783 -28.51701 -25.65031 -24.65995 -23.32774 -22.14969 -20.10918 -18.99667 -17.32378 -16.44504 -15.90715 -15.53848 -15.22437 -14.72471 -14.67503 -14.21911 -13.92617 -13.49795 -13.17754 -13.08078 -12.46394 -12.39011 -12.29939 -11.91909 -11.81073 -11.76396 -11.26708 -11.11868 -10.84538 -10.69078 -10.59173 -10.51665 -10.47625 -9.49869 -8.85486 -8.71021 -8.25682 -8.05235 -7.63210 -6.67940 -4.29118 1.57264 1.61804 1.98172 2.40934 2.97145 3.04307 3.11679 3.17957 3.45386 3.98697 4.37316 4.42701 4.56407 4.87212 5.04961 5.10061 5.15286 5.21781 5.35132 5.42408 5.55968 5.75874 5.94877 5.95422 6.12764 6.19498 6.80899 7.09314 7.23313 7.28342 7.61869 7.86713 8.10156 8.61128 8.79796 9.15319 9.67697 10.32965 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.006361 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.733344 B = 4400.524235 C = 6108.504853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 N -0.696 5.696 4 C 0.631 3.369 5 N -0.637 5.637 6 C 0.394 3.606 7 S -0.008 6.008 8 C -0.140 4.140 9 N -0.611 5.611 10 C 0.594 3.406 11 N -0.293 5.293 12 C 0.472 3.528 13 N -0.443 5.443 14 C -0.315 4.315 15 H 0.135 0.865 16 C 0.025 3.975 17 N -0.861 5.861 18 Si 0.950 3.050 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.661 5.661 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.412 0.588 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -13.764 0.046 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.336 5.336 4 C 0.263 3.737 5 N -0.379 5.379 6 C 0.007 3.993 7 S 0.222 5.778 8 C -0.310 4.310 9 N -0.349 5.349 10 C 0.231 3.769 11 N 0.009 4.991 12 C 0.068 3.932 13 N -0.135 5.135 14 C -0.443 4.443 15 H 0.153 0.847 16 C -0.182 4.182 17 N -0.496 5.496 18 Si 0.775 3.225 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.202 1.202 22 N -0.403 5.403 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.249 0.751 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.495 -13.388 0.045 13.619 hybrid contribution 1.050 1.821 -0.012 2.102 sum -1.445 -11.567 0.033 11.657 Atomic orbital electron populations 1.22020 0.94864 1.02903 1.02528 1.21184 0.93260 0.81950 1.02415 1.43955 1.01180 1.08612 1.79883 1.18806 0.86686 0.83870 0.84322 1.68487 1.01623 1.34352 1.33429 1.24420 0.92043 0.93634 0.89224 1.85355 0.96621 1.04899 1.90940 1.23530 0.95487 1.03866 1.08080 1.68704 1.37842 0.97867 1.30466 1.18327 0.83447 0.85260 0.89821 1.37213 1.04213 0.96147 1.61514 1.22335 0.89061 0.88530 0.93316 1.81362 1.11035 1.04874 1.16237 1.20236 0.77620 0.94605 1.51809 0.84735 1.25593 1.01974 0.94801 0.95834 1.69661 1.34686 1.00308 1.44904 0.85470 0.79660 0.79150 0.78220 1.18465 1.20183 1.20186 1.67855 1.15789 1.22057 1.34633 0.92064 0.90809 0.92052 0.91641 0.91624 0.75105 0.88242 0.88756 0.88754 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.03 37.16 0.37 -1.02 16 2 C 0.14 1.62 6.40 -4.04 -0.03 1.59 16 3 N -0.70 -10.78 5.69 -62.19 -0.35 -11.13 16 4 C 0.63 12.63 8.48 -322.22 -2.73 9.90 16 5 N -0.64 -12.50 9.70 -14.19 -0.14 -12.63 16 6 C 0.39 7.74 7.90 -90.05 -0.71 7.03 16 7 S -0.01 -0.12 22.92 -107.50 -2.46 -2.58 16 8 C -0.14 -1.79 9.65 101.05 0.98 -0.81 16 9 N -0.61 -13.37 8.06 -14.05 -0.11 -13.49 16 10 C 0.59 14.43 8.11 -321.42 -2.61 11.82 16 11 N -0.29 -7.68 2.85 -26.97 -0.08 -7.76 16 12 C 0.47 13.00 12.18 -102.19 -1.24 11.76 16 13 N -0.44 -12.32 17.99 41.27 0.74 -11.57 16 14 C -0.32 -7.99 9.58 -14.92 -0.14 -8.13 16 15 H 0.14 3.20 7.09 -52.49 -0.37 2.83 16 16 C 0.03 0.63 5.44 -17.49 -0.10 0.54 16 17 N -0.86 -23.33 10.36 55.49 0.57 -22.76 16 18 Si 0.95 19.05 29.55 -169.99 -5.02 14.03 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 N -0.66 -15.27 9.71 -14.64 -0.14 -15.41 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.41 5.90 8.59 -40.82 -0.35 5.55 16 29 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.09 1.30 8.13 -51.91 -0.42 0.88 16 31 H 0.09 1.30 8.13 -51.92 -0.42 0.88 16 32 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -30.43 305.01 -11.85 -42.28 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.24 Total: 3.76 kcal Atomic # 6 Polarization: 38.88 SS G_CDS: -6.21 Total: 32.67 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: 0.49 Total: -94.75 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.46 Total: -2.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.43 -11.85 -42.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000495699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.627 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds