Wall clock time and date at job start Tue Mar 31 2020 01:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.38019 * 119.99780 * 180.27959 * 3 2 1 5 5 N 1.32924 * 120.00416 * 359.72118 * 4 3 2 6 6 C 1.32988 * 119.97748 * 180.02562 * 5 4 3 7 7 S 1.76201 * 120.01033 * 179.97438 * 6 5 4 8 8 C 1.81003 * 99.99893 * 179.97438 * 7 6 5 9 9 N 1.33034 * 119.97813 * 0.02562 * 6 5 4 10 10 C 1.32826 * 120.00067 * 359.97438 * 9 6 5 11 11 N 1.38709 * 119.98722 * 180.02562 * 10 9 6 12 12 C 1.35496 * 119.99922 * 179.97438 * 11 10 9 13 13 N 6.78332 * 111.05268 * 359.79628 * 2 1 3 14 14 C 1.37204 * 119.99957 * 359.97438 * 11 10 9 15 15 H 1.08002 * 120.00097 * 0.02562 * 14 11 10 16 16 C 1.38856 * 120.00224 * 179.97438 * 14 11 10 17 17 N 1.31445 * 119.99770 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00164 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47106 * 120.00368 * 18 16 14 21 21 H 1.48503 * 109.46646 * 240.00061 * 18 16 14 22 22 N 1.32895 * 120.02536 * 359.72628 * 10 9 6 23 23 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 24 24 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 26 26 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 27 27 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 28 28 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47095 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.47022 * 299.99801 * 8 7 6 31 31 H 1.09001 * 109.47098 * 59.99970 * 8 7 6 32 32 H 0.97003 * 120.00207 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3753 1.6333 -0.0058 5 7 4.2391 0.6230 -0.0058 6 6 5.5465 0.8666 -0.0110 7 16 6.6923 -0.4720 -0.0103 8 6 8.2509 0.4484 -0.0193 9 7 5.9890 2.1212 -0.0155 10 6 5.1250 3.1301 -0.0155 11 7 5.5866 4.4381 -0.0208 12 6 4.7055 5.4675 -0.0213 13 7 3.9668 6.3305 -0.0225 14 6 6.9354 4.6896 -0.0256 15 1 7.6377 3.8691 -0.0256 16 6 7.3976 5.9989 -0.0314 17 7 6.5428 6.9976 -0.0319 18 14 9.2340 6.3413 -0.0386 19 1 9.9771 5.0557 -0.0361 20 1 9.5883 7.1162 -1.2547 21 1 9.5962 7.1242 1.1702 22 7 3.8185 2.8868 -0.0164 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.3880 2.1185 -0.0004 29 1 9.0862 -0.2517 -0.0193 30 1 8.2992 1.0724 -0.9118 31 1 8.3057 1.0788 0.8683 32 1 6.8656 7.9123 -0.0364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000495699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:35 Heat of formation + Delta-G solvation = 108.258542 kcal Electronic energy + Delta-G solvation = -19110.612145 eV Core-core repulsion = 16040.623041 eV Total energy + Delta-G solvation = -3069.989104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.30458 -39.39817 -37.63369 -35.72348 -34.82153 -34.18046 -32.82548 -30.81395 -29.59960 -27.48901 -26.28332 -24.72676 -23.45506 -21.87139 -20.58454 -18.95655 -18.04690 -17.26456 -17.12228 -17.08569 -16.00359 -15.88682 -15.72644 -15.33122 -15.13628 -14.74173 -14.37984 -14.26613 -13.58944 -13.39500 -13.14739 -13.09503 -13.08935 -12.91314 -12.65735 -12.52038 -12.51540 -12.01880 -12.00402 -11.69778 -11.28138 -10.50534 -10.40300 -10.02748 -9.53214 -8.88384 -8.53055 -6.23649 -0.03508 0.22046 0.31217 1.14359 1.37932 1.48377 1.54221 1.66886 1.94414 2.24615 2.44119 2.48701 2.76021 3.26653 3.31853 3.59186 4.16600 4.28753 4.34075 4.50021 4.52319 4.58644 4.96867 5.09954 5.12732 5.17377 5.27238 5.30316 5.56929 5.70484 6.08147 6.10777 6.52523 6.75365 6.96798 7.39514 7.75241 8.50041 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.006361 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.733344 B = 4400.524235 C = 6108.504853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 N -0.682 5.682 4 C 0.619 3.381 5 N -0.630 5.630 6 C 0.372 3.628 7 S 0.043 5.957 8 C -0.142 4.142 9 N -0.618 5.618 10 C 0.592 3.408 11 N -0.316 5.316 12 C 0.471 3.529 13 N -0.472 5.472 14 C -0.331 4.331 15 H 0.146 0.854 16 C -0.024 4.024 17 N -0.908 5.908 18 Si 1.022 2.978 19 H -0.238 1.238 20 H -0.277 1.277 21 H -0.277 1.277 22 N -0.687 5.687 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.417 0.583 29 H 0.142 0.858 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -16.605 0.052 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.010 3.990 3 N -0.321 5.321 4 C 0.251 3.749 5 N -0.371 5.371 6 C -0.013 4.013 7 S 0.273 5.727 8 C -0.311 4.311 9 N -0.357 5.357 10 C 0.228 3.772 11 N -0.017 5.017 12 C 0.067 3.933 13 N -0.166 5.166 14 C -0.457 4.457 15 H 0.163 0.837 16 C -0.225 4.225 17 N -0.545 5.545 18 Si 0.842 3.158 19 H -0.160 1.160 20 H -0.203 1.203 21 H -0.203 1.203 22 N -0.431 5.431 23 H 0.083 0.917 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.255 0.745 29 H 0.160 0.840 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.649 -16.368 0.051 16.451 hybrid contribution 0.663 2.341 -0.012 2.433 sum -0.986 -14.027 0.039 14.062 Atomic orbital electron populations 1.21980 0.91828 1.04570 1.02908 1.21453 0.95662 0.79717 1.02214 1.44314 0.99553 1.10512 1.77693 1.19290 0.88398 0.83221 0.84017 1.68659 1.01793 1.33746 1.32896 1.25591 0.93261 0.94428 0.88043 1.85241 0.95925 1.02294 1.89261 1.23685 0.95662 1.04588 1.07172 1.68793 1.37382 0.98188 1.31356 1.18644 0.84388 0.85323 0.88811 1.37467 1.04309 0.96403 1.63539 1.22592 0.89025 0.88728 0.92951 1.81292 1.11966 1.05347 1.17951 1.20620 0.77620 0.95280 1.52224 0.83657 1.26649 1.06678 0.94176 0.95036 1.69781 1.36816 1.00558 1.47388 0.84429 0.73913 0.79657 0.77761 1.16044 1.20295 1.20301 1.67882 1.15693 1.23831 1.35675 0.91695 0.88437 0.91667 0.91778 0.91737 0.74529 0.84044 0.89637 0.89634 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.03 71.98 0.72 -1.48 16 2 C 0.13 2.89 6.40 86.38 0.55 3.44 16 3 N -0.68 -20.40 5.69 -350.68 -1.99 -22.39 16 4 C 0.62 24.47 8.48 261.28 2.21 26.68 16 5 N -0.63 -23.95 9.70 -198.81 -1.93 -25.88 16 6 C 0.37 14.10 7.90 180.15 1.42 15.52 16 7 S 0.04 1.15 22.92 -56.49 -1.29 -0.15 16 8 C -0.14 -3.18 9.65 113.37 1.09 -2.09 16 9 N -0.62 -26.84 8.06 -198.37 -1.60 -28.44 16 10 C 0.59 29.20 8.11 261.00 2.12 31.32 16 11 N -0.32 -17.05 2.85 -239.25 -0.68 -17.73 16 12 C 0.47 26.97 12.18 184.39 2.25 29.22 16 13 N -0.47 -27.33 17.99 17.21 0.31 -27.02 16 14 C -0.33 -17.05 9.58 84.00 0.80 -16.24 16 15 H 0.15 6.91 7.09 -2.91 -0.02 6.89 16 16 C -0.02 -1.21 5.44 84.90 0.46 -0.75 16 17 N -0.91 -50.98 10.36 21.65 0.22 -50.75 16 18 Si 1.02 39.05 29.55 68.60 2.03 41.08 16 19 H -0.24 -8.07 7.11 99.48 0.71 -7.36 16 20 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.28 -10.53 7.11 99.48 0.71 -9.83 16 22 N -0.69 -32.19 9.71 -200.24 -1.94 -34.13 16 23 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.42 11.61 8.59 -92.71 -0.80 10.81 16 29 H 0.14 2.00 8.14 -2.40 -0.02 1.99 16 30 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 31 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 32 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -68.28 305.01 5.13 -63.14 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.38 Total: 16.67 kcal Atomic # 6 Polarization: 73.97 SS G_CDS: 11.64 Total: 85.61 kcal Atomic # 7 Polarization: -198.74 SS G_CDS: -7.61 Total: -206.35 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.29 Total: -0.15 kcal Total: -68.28 5.13 -63.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000495699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.401 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds