Wall clock time and date at job start Tue Mar 31 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35662 * 117.00293 * 2 1 4 4 C 1.39083 * 119.88071 * 0.02562 * 3 2 1 5 5 C 1.36587 * 120.23872 * 179.97438 * 4 3 2 6 6 C 1.40031 * 120.01027 * 0.02562 * 5 4 3 7 7 C 1.46860 * 120.11250 * 179.97438 * 6 5 4 8 8 C 1.50695 * 120.00039 * 0.02562 * 7 6 5 9 9 O 1.21294 * 119.99720 * 180.02562 * 7 6 5 10 10 C 1.40033 * 119.77326 * 359.73014 * 6 5 4 11 11 C 1.37656 * 119.75742 * 0.51862 * 10 6 5 12 12 C 1.50703 * 120.00645 * 179.77746 * 11 10 6 13 13 S 1.81401 * 109.47002 * 269.72212 * 12 11 10 14 14 C 1.81397 * 102.99785 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47105 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00111 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00216 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99927 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47530 * 59.99615 * 19 17 15 21 21 H 1.48501 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47332 * 299.99419 * 19 17 15 23 23 H 1.09001 * 109.47430 * 299.99783 * 1 2 3 24 24 H 1.08999 * 109.47440 * 59.99714 * 1 2 3 25 25 H 1.09004 * 109.47591 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.88261 * 0.02716 * 4 3 2 27 27 H 1.08002 * 119.99057 * 180.02562 * 5 4 3 28 28 H 1.09005 * 109.47306 * 60.00389 * 8 7 6 29 29 H 1.09006 * 109.47436 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.47515 * 299.99698 * 8 7 6 31 31 H 1.08006 * 120.12548 * 180.27400 * 10 6 5 32 32 H 1.09002 * 109.47152 * 149.72313 * 12 11 10 33 33 H 1.09001 * 109.46980 * 29.72413 * 12 11 10 34 34 H 1.09004 * 109.47371 * 299.99984 * 14 13 12 35 35 H 1.09000 * 109.47527 * 60.00229 * 14 13 12 36 36 H 0.96993 * 120.00403 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2850 2.3736 0.0005 5 6 1.8976 3.5945 0.0011 6 6 3.2955 3.6767 0.0005 7 6 3.9564 4.9881 0.0005 8 6 3.1301 6.2483 0.0017 9 8 5.1674 5.0569 -0.0004 10 6 4.0610 2.5041 0.0052 11 6 3.4339 1.2787 -0.0006 12 6 4.2522 0.0132 -0.0007 13 16 4.5804 -0.4944 -1.7110 14 6 5.5599 -2.0075 -1.5067 15 6 5.9184 -2.5607 -2.8619 16 1 5.5895 -2.0530 -3.7566 17 6 6.6653 -3.7155 -2.9596 18 7 7.0655 -4.3340 -1.8701 19 14 7.1091 -4.4015 -4.6394 20 1 7.9027 -3.3962 -5.3909 21 1 7.9110 -5.6401 -4.4722 22 1 5.8667 -4.7134 -5.3907 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2068 2.3127 0.0014 27 1 1.3036 4.4965 0.0019 28 1 2.5019 6.2701 0.8923 29 1 3.7903 7.1157 0.0020 30 1 2.5005 6.2709 -0.8878 31 1 5.1396 2.5609 0.0093 32 1 3.7023 -0.7752 0.5131 33 1 5.1969 0.1915 0.5131 34 1 6.4719 -1.7783 -0.9554 35 1 4.9776 -2.7456 -0.9551 36 1 7.5913 -5.1461 -1.9388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002196936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:39 Heat of formation + Delta-G solvation = -63.024760 kcal Electronic energy + Delta-G solvation = -18622.942138 eV Core-core repulsion = 15584.480473 eV Total energy + Delta-G solvation = -3038.461664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55369 -39.23447 -37.16335 -33.23889 -33.08951 -31.04704 -29.68263 -28.49881 -27.73690 -26.54618 -23.38543 -22.99731 -21.87918 -19.55493 -18.19148 -16.68589 -16.54308 -16.31564 -15.93862 -15.18752 -15.03508 -14.90269 -14.55178 -14.45920 -13.94823 -13.51648 -13.08192 -12.94259 -12.72020 -12.45015 -12.41895 -12.25615 -12.11238 -12.01216 -11.66641 -11.17266 -11.00741 -10.81264 -10.69113 -10.13548 -9.83098 -9.56284 -8.97713 -8.76115 -8.56518 -8.16448 -6.58586 -6.14638 -4.18545 0.65156 1.18811 2.27726 2.85525 3.15902 3.31344 3.34034 3.38752 3.79543 3.93118 4.00195 4.39585 4.49566 4.63741 4.87065 4.92669 5.02179 5.08425 5.14309 5.17378 5.21208 5.22243 5.36882 5.48475 5.52843 5.73460 5.82175 6.07145 6.11860 6.16749 6.38532 6.62256 7.16351 7.17740 7.25168 7.48654 7.79643 8.06895 8.82894 9.43924 10.96714 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.003968 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.023923 B = 7054.020353 C = 8020.208033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.177 3.823 4 C -0.225 4.225 5 C -0.035 4.035 6 C -0.218 4.218 7 C 0.397 3.603 8 C -0.199 4.199 9 O -0.462 6.462 10 C -0.005 4.005 11 C -0.101 4.101 12 C -0.045 4.045 13 S -0.296 6.296 14 C 0.089 3.911 15 C -0.511 4.511 16 H 0.066 0.934 17 C 0.065 3.935 18 N -0.894 5.894 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 16.037 6.944 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C 0.128 3.872 4 C -0.243 4.243 5 C -0.054 4.054 6 C -0.219 4.219 7 C 0.276 3.724 8 C -0.256 4.256 9 O -0.339 6.339 10 C -0.025 4.025 11 C -0.103 4.103 12 C -0.192 4.192 13 S -0.067 6.067 14 C -0.057 4.057 15 C -0.550 4.550 16 H 0.084 0.916 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.733 3.267 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.160 0.840 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.650 16.163 6.077 22.645 hybrid contribution 0.222 -1.010 0.282 1.072 sum -14.428 15.153 6.359 21.868 Atomic orbital electron populations 1.23137 0.78275 1.04404 1.01195 1.86172 1.21368 1.26354 1.86882 1.19187 0.91688 0.84546 0.91743 1.20893 1.00241 0.92085 1.11130 1.20860 0.93193 0.97413 0.93910 1.20295 0.94160 0.94779 1.12655 1.22305 0.89011 0.90034 0.71014 1.22234 1.02048 0.96998 1.04285 1.90562 1.16665 1.89787 1.36868 1.21186 1.00757 0.89675 0.90908 1.18760 0.90225 0.94940 1.06351 1.21987 1.01080 0.96481 0.99696 1.86768 1.73046 1.38607 1.08279 1.21050 0.95112 0.88441 1.01137 1.20645 1.34134 1.09107 0.91115 0.91577 1.24961 0.95332 0.96182 0.97392 1.69945 1.36759 1.18726 1.27789 0.86417 0.78636 0.78240 0.83377 1.19902 1.21079 1.19939 0.92667 0.92368 0.87906 0.84847 0.85036 0.89065 0.89881 0.88973 0.83989 0.89452 0.89920 0.94652 0.94633 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.80 101.05 0.99 1.21 16 2 O -0.30 -4.18 9.52 -18.69 -0.18 -4.36 16 3 C 0.18 2.49 6.67 -38.96 -0.26 2.23 16 4 C -0.22 -2.40 8.96 -39.86 -0.36 -2.76 16 5 C -0.03 -0.34 9.41 -39.51 -0.37 -0.71 16 6 C -0.22 -2.72 5.87 -105.06 -0.62 -3.33 16 7 C 0.40 4.74 7.22 -30.82 -0.22 4.52 16 8 C -0.20 -1.42 8.92 36.00 0.32 -1.10 16 9 O -0.46 -7.33 17.07 5.55 0.09 -7.23 16 10 C -0.01 -0.08 9.24 -39.12 -0.36 -0.44 16 11 C -0.10 -1.61 5.15 -104.52 -0.54 -2.15 16 12 C -0.05 -0.83 5.85 36.01 0.21 -0.62 16 13 S -0.30 -6.78 21.64 -107.50 -2.33 -9.11 16 14 C 0.09 2.41 5.70 36.01 0.21 2.61 16 15 C -0.51 -14.83 9.13 -34.44 -0.31 -15.14 16 16 H 0.07 1.92 7.71 -52.49 -0.40 1.51 16 17 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 24 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.13 1.02 6.27 -52.49 -0.33 0.70 16 27 H 0.13 0.80 7.03 -52.49 -0.37 0.43 16 28 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.14 2.23 7.65 -52.48 -0.40 1.83 16 32 H 0.09 1.59 7.53 -51.92 -0.39 1.20 16 33 H 0.08 1.45 8.08 -51.92 -0.42 1.03 16 34 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -33.65 326.34 -7.96 -41.61 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.77 Total: -2.93 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.41 Total: -13.91 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -2.33 Total: -9.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.65 -7.96 -41.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002196936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.412 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds