Wall clock time and date at job start Tue Mar 31 2020 01:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99688 * 2 1 4 4 H 1.48498 * 109.47286 * 239.99452 * 3 2 1 5 5 H 1.48501 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46842 * 119.99965 * 3 2 1 7 7 C 1.37876 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99674 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46840 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99945 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00037 * 180.02562 * 11 10 9 14 14 O 1.42909 * 109.47245 * 180.02562 * 13 11 10 15 15 C 1.35897 * 117.00046 * 180.02562 * 14 13 11 16 16 C 1.38727 * 120.05648 * 179.97438 * 15 14 13 17 17 C 1.38146 * 119.94819 * 180.02562 * 16 15 14 18 18 C 1.38264 * 120.05197 * 0.03048 * 17 16 15 19 19 N 1.48007 * 119.94459 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99745 * 359.97438 * 19 18 17 21 21 O 1.21799 * 120.00052 * 179.72330 * 19 18 17 22 22 C 1.38267 * 120.11170 * 0.24436 * 18 17 16 23 23 C 1.38145 * 120.05652 * 359.45728 * 22 18 17 24 24 H 0.97002 * 120.00112 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47538 * 60.00267 * 9 7 2 26 26 H 1.09000 * 109.47545 * 299.99875 * 9 7 2 27 27 H 0.96991 * 120.00229 * 0.02562 * 10 9 7 28 28 H 1.08997 * 109.47151 * 60.00019 * 13 11 10 29 29 H 1.08997 * 109.47073 * 299.99580 * 13 11 10 30 30 H 1.08002 * 120.02536 * 0.02562 * 16 15 14 31 31 H 1.07994 * 119.97339 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.97348 * 179.73305 * 22 18 17 33 33 H 1.08000 * 120.03074 * 180.25062 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5616 -5.1050 0.0019 13 6 2.7333 -6.0287 0.0022 14 8 2.0188 -7.2663 0.0020 15 6 2.7590 -8.4060 0.0028 16 6 2.1304 -9.6428 0.0032 17 6 2.8851 -10.7999 0.0045 18 6 4.2657 -10.7261 0.0061 19 7 5.0719 -11.9674 0.0081 20 8 4.5189 -13.0526 0.0088 21 8 6.2882 -11.9036 0.0045 22 6 4.8946 -9.4947 0.0115 23 6 4.1445 -8.3347 0.0039 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 3.1568 -3.4354 0.0010 28 1 3.3599 -5.9707 0.8921 29 1 3.3598 -5.9712 -0.8878 30 1 1.0520 -9.7009 0.0024 31 1 2.3962 -11.7628 0.0052 32 1 5.9732 -9.4397 0.0171 33 1 4.6361 -7.3731 0.0040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007168413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:42 Heat of formation + Delta-G solvation = -75.781939 kcal Electronic energy + Delta-G solvation = -20097.458379 eV Core-core repulsion = 16512.150308 eV Total energy + Delta-G solvation = -3585.308072 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.21283 -41.68527 -40.39210 -38.63274 -37.64225 -36.20640 -34.42639 -32.72456 -32.28174 -30.62344 -28.57431 -27.03443 -24.90295 -24.11750 -23.19520 -21.62330 -20.40512 -19.78556 -19.53888 -19.10269 -18.56960 -17.75141 -17.56966 -17.05676 -16.80613 -16.08048 -15.86342 -15.84526 -14.91128 -14.87661 -14.58223 -14.28833 -14.09013 -13.83467 -13.74031 -12.96808 -12.71620 -12.69267 -12.41820 -12.35148 -12.28899 -12.27882 -12.23091 -11.52889 -10.91419 -10.80854 -10.52660 -9.95667 -9.87511 -8.29921 -6.46644 -1.19781 -0.11279 0.29653 0.41880 1.39543 1.46709 1.47815 1.56520 1.57083 2.21178 2.35766 2.68715 3.05730 3.29579 3.45678 3.53157 3.71774 3.87735 3.99888 4.06244 4.21650 4.42262 4.63826 4.70060 4.87657 5.04891 5.08992 5.21268 5.32406 5.41705 5.61728 5.81966 5.94118 6.51434 6.63195 6.78653 7.21536 7.38323 8.81835 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.048863 B = 0.002505 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.893102 B =11174.452167 C =11726.896969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.494 3.506 12 O -0.591 6.591 13 C 0.044 3.956 14 O -0.302 6.302 15 C 0.182 3.818 16 C -0.154 4.154 17 C -0.010 4.010 18 C -0.106 4.106 19 N 0.039 4.961 20 O -0.192 6.192 21 O -0.183 6.183 22 C -0.006 4.006 23 C -0.201 4.201 24 H 0.268 0.732 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.415 0.585 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.514 -16.681 0.018 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.280 3.720 12 O -0.472 6.472 13 C -0.033 4.033 14 O -0.213 6.213 15 C 0.134 3.866 16 C -0.173 4.173 17 C -0.029 4.029 18 C -0.190 4.190 19 N 0.551 4.449 20 O -0.403 6.403 21 O -0.396 6.396 22 C -0.025 4.025 23 C -0.220 4.220 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.252 0.748 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.192 0.808 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.921 -16.105 0.023 19.459 hybrid contribution 0.403 0.637 0.002 0.754 sum 11.324 -15.469 0.025 19.170 Atomic orbital electron populations 1.70127 1.08308 1.28658 1.49894 1.26055 0.95727 1.03929 0.93924 0.85223 0.77887 0.76661 0.79555 1.18569 1.21511 1.18583 1.21586 0.94501 0.90299 1.52930 0.89287 1.18595 0.88658 0.84012 0.94427 1.46000 1.11724 1.04683 1.72449 1.20874 0.89443 0.84925 0.76721 1.90716 1.19481 1.85359 1.51615 1.22850 0.93112 0.79283 1.08035 1.86225 1.35758 1.12761 1.86512 1.19687 0.90962 0.86607 0.89373 1.20628 1.02466 0.87972 1.06248 1.20950 0.90007 1.00934 0.90996 1.21205 0.92076 0.84022 1.21713 1.43821 1.01320 1.03165 0.96580 1.94524 1.74280 1.16545 1.54921 1.94511 0.96498 1.94237 1.54359 1.21073 1.03047 0.88359 0.89977 1.21631 0.91440 1.00939 1.07962 0.92275 0.99209 0.99202 0.74829 0.84340 0.84350 0.81804 0.81120 0.80825 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.98 40.06 29.54 68.60 2.03 42.09 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.56 -28.03 9.28 25.60 0.24 -27.80 16 8 H 0.09 3.94 7.60 -2.91 -0.02 3.91 16 9 C 0.27 13.50 5.43 85.63 0.46 13.97 16 10 N -0.70 -25.15 5.55 -466.78 -2.59 -27.74 16 11 C 0.49 16.96 7.91 87.66 0.69 17.65 16 12 O -0.59 -27.61 16.50 16.00 0.26 -27.35 16 13 C 0.04 0.83 5.22 71.23 0.37 1.20 16 14 O -0.30 -6.88 9.67 -73.35 -0.71 -7.59 16 15 C 0.18 3.00 6.69 22.51 0.15 3.15 16 16 C -0.15 -2.38 9.99 22.36 0.22 -2.16 16 17 C -0.01 -0.15 9.55 22.25 0.21 0.06 16 18 C -0.11 -1.84 6.85 36.39 0.25 -1.59 16 19 N 0.04 0.88 4.45 -46.44 -0.21 0.67 16 20 O -0.19 -4.73 18.44 18.88 0.35 -4.38 16 21 O -0.18 -4.36 18.44 18.89 0.35 -4.01 16 22 C -0.01 -0.07 9.55 22.25 0.21 0.14 16 23 C -0.20 -2.23 9.04 22.37 0.20 -2.02 16 24 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.41 11.12 8.32 -92.72 -0.77 10.35 16 28 H 0.14 1.48 7.66 -2.39 -0.02 1.46 16 29 H 0.14 1.48 7.66 -2.39 -0.02 1.46 16 30 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.17 2.06 7.60 -2.91 -0.02 2.04 16 32 H 0.17 1.59 7.61 -2.91 -0.02 1.56 16 33 H 0.19 0.79 6.30 -2.91 -0.02 0.77 16 Total: -1.00 -75.89 307.56 3.64 -72.24 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.40 Total: 6.69 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 3.48 Total: 3.25 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.51 Total: -80.95 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: 0.25 Total: -43.33 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -75.89 3.64 -72.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007168413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.537 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds