Wall clock time and date at job start Tue Mar 31 2020 01:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48495 * 109.47008 * 270.00024 * 3 2 1 5 5 H 1.48506 * 109.47112 * 30.00153 * 3 2 1 6 6 H 1.48498 * 109.47025 * 149.99776 * 3 2 1 7 7 C 1.38748 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00684 * 0.02562 * 7 2 1 9 9 O 1.34921 * 119.99791 * 179.97438 * 7 2 1 10 10 C 1.34321 * 117.00257 * 179.97438 * 9 7 2 11 11 O 1.21204 * 119.99642 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00222 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47360 * 180.02562 * 12 10 9 14 14 N 1.46498 * 109.47265 * 179.97438 * 13 12 10 15 15 C 1.39678 * 119.99964 * 179.97438 * 14 13 12 16 16 C 1.38930 * 120.07548 * 5.87173 * 15 14 13 17 17 C 1.38079 * 119.92672 * 180.02562 * 16 15 14 18 18 C 1.38311 * 120.07435 * 359.73332 * 17 16 15 19 19 C 1.38263 * 120.14749 * 0.54451 * 18 17 16 20 20 C 1.38129 * 120.07332 * 359.45253 * 19 18 17 21 21 N 1.48004 * 120.03383 * 180.29845 * 20 19 18 22 22 O 1.21792 * 120.00120 * 37.44481 * 21 20 19 23 23 O 1.21804 * 119.99268 * 217.44600 * 21 20 19 24 24 H 0.96999 * 120.00212 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47309 * 59.99507 * 12 10 9 26 26 H 1.09001 * 109.47052 * 300.00429 * 12 10 9 27 27 H 1.09008 * 109.47223 * 59.99664 * 13 12 10 28 28 H 1.09001 * 109.47228 * 300.00125 * 13 12 10 29 29 H 0.96993 * 120.00461 * 0.02562 * 14 13 12 30 30 H 1.08004 * 120.03871 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.96379 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.92136 * 180.27651 * 18 17 16 33 33 H 1.07993 * 119.95747 * 179.72974 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0463 -1.4000 5 1 1.4459 2.6527 0.7001 6 1 3.5460 1.4401 0.7001 7 6 2.0081 -1.2016 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3573 -1.2017 0.0000 10 6 3.9671 -2.3985 0.0011 11 8 3.3070 -3.4149 0.0020 12 6 5.4720 -2.4774 0.0012 13 6 5.9058 -3.9445 0.0019 14 7 7.3688 -4.0212 0.0014 15 6 8.0029 -5.2657 0.0024 16 6 7.2533 -6.4292 -0.1191 17 6 7.8833 -7.6578 -0.1171 18 6 9.2595 -7.7310 0.0000 19 6 10.0080 -6.5754 0.1268 20 6 9.3842 -5.3430 0.1255 21 7 10.1868 -4.1063 0.2547 22 8 11.2748 -4.0270 -0.2870 23 8 9.7593 -3.1678 0.9028 24 1 -0.4850 0.8400 0.0004 25 1 5.8618 -1.9824 0.8907 26 1 5.8617 -1.9840 -0.8892 27 1 5.5161 -4.4391 -0.8879 28 1 5.5161 -4.4382 0.8921 29 1 7.8971 -3.2078 0.0011 30 1 6.1791 -6.3726 -0.2149 31 1 7.3012 -8.5627 -0.2111 32 1 9.7501 -8.6931 -0.0033 33 1 11.0820 -6.6363 0.2224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011310707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:16 Heat of formation + Delta-G solvation = -54.154123 kcal Electronic energy + Delta-G solvation = -20758.661947 eV Core-core repulsion = 17174.291727 eV Total energy + Delta-G solvation = -3584.370219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32685 -39.90701 -39.32524 -36.95150 -36.36484 -35.37656 -32.45969 -32.33134 -31.73995 -29.11256 -26.50706 -25.89875 -24.22497 -22.58406 -21.95655 -20.04173 -19.27277 -18.80157 -18.10836 -17.94028 -17.52007 -16.72621 -15.99880 -15.89310 -15.31614 -14.94546 -14.57433 -14.51899 -14.19817 -13.79004 -13.45709 -12.73040 -12.52902 -12.16605 -12.03153 -11.94979 -11.76244 -11.68428 -11.24992 -11.23664 -11.13625 -10.57545 -10.55038 -10.44473 -9.81971 -9.79255 -9.35651 -8.76198 -8.10745 -6.45016 -4.21806 -0.08942 0.90153 1.06875 1.33487 2.73739 3.03951 3.11528 3.20668 3.27494 3.33981 4.06883 4.09464 4.18847 4.39848 4.62665 4.67475 4.74833 4.86836 4.96124 5.10701 5.20118 5.40962 5.46577 5.64680 5.78087 5.81135 5.92691 6.05190 6.21481 6.26157 6.63122 7.12122 7.52640 7.62503 7.94835 8.48621 8.92348 9.55759 10.63066 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.027979 B = 0.003474 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.524473 B = 8057.623030 C = 8994.731274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.067 3.933 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.385 4.385 8 H 0.110 0.890 9 O -0.247 6.247 10 C 0.413 3.587 11 O -0.541 6.541 12 C -0.119 4.119 13 C 0.131 3.869 14 N -0.724 5.724 15 C 0.284 3.716 16 C -0.195 4.195 17 C -0.024 4.024 18 C -0.179 4.179 19 C -0.017 4.017 20 C -0.126 4.126 21 N 0.039 4.961 22 O -0.159 6.159 23 O -0.180 6.180 24 H 0.281 0.719 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.411 0.589 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.680 -12.898 -0.343 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.460 4.460 8 H 0.128 0.872 9 O -0.156 6.156 10 C 0.258 3.742 11 O -0.437 6.437 12 C -0.157 4.157 13 C 0.008 3.992 14 N -0.353 5.353 15 C 0.172 3.828 16 C -0.218 4.218 17 C -0.043 4.043 18 C -0.200 4.200 19 C -0.037 4.037 20 C -0.215 4.215 21 N 0.555 4.445 22 O -0.377 6.377 23 O -0.389 6.389 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.250 0.750 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.656 -13.494 -0.374 22.225 hybrid contribution 0.592 1.445 0.024 1.562 sum 18.248 -12.049 -0.349 21.870 Atomic orbital electron populations 1.69603 1.05736 1.28573 1.47134 1.24560 0.95028 0.98774 0.95364 0.86213 0.80325 0.81399 0.79000 1.19803 1.20634 1.18337 1.20652 0.75971 0.97045 1.52337 0.87201 1.83504 1.24144 1.31145 1.76762 1.22443 0.89778 0.82849 0.79115 1.90611 1.67011 1.36151 1.49942 1.21172 0.91979 0.96813 1.05756 1.21303 0.77310 0.96826 1.03795 1.45366 1.07616 1.05170 1.77107 1.17483 0.87916 0.87966 0.89423 1.20909 1.01120 0.90004 1.09719 1.21341 0.94589 0.97627 0.90723 1.20905 0.93893 0.97726 1.07428 1.20687 1.00992 0.89223 0.92775 1.20465 0.89595 0.85051 1.26363 1.43522 1.00828 1.02311 0.97824 1.94525 1.08357 1.88103 1.46744 1.94497 1.74588 1.30784 1.39034 0.90901 0.87813 0.88219 0.90183 0.89930 0.74989 0.83315 0.84151 0.84191 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.40 13.96 55.48 0.77 -24.63 16 2 C 0.07 1.89 5.49 -17.53 -0.10 1.79 16 3 Si 0.91 21.03 28.62 -169.99 -4.86 16.16 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.26 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.38 -11.16 10.10 30.92 0.31 -10.85 16 8 H 0.11 3.51 7.09 -52.49 -0.37 3.13 16 9 O -0.25 -6.29 8.58 -20.73 -0.18 -6.47 16 10 C 0.41 8.99 7.91 36.00 0.28 9.27 16 11 O -0.54 -13.23 15.22 -19.05 -0.29 -13.52 16 12 C -0.12 -1.77 5.92 -27.89 -0.17 -1.94 16 13 C 0.13 1.70 4.25 -4.05 -0.02 1.68 16 14 N -0.72 -8.68 5.51 -58.63 -0.32 -9.00 16 15 C 0.28 3.23 6.61 -83.79 -0.55 2.67 16 16 C -0.19 -1.82 9.32 -39.38 -0.37 -2.19 16 17 C -0.02 -0.17 10.04 -39.61 -0.40 -0.56 16 18 C -0.18 -1.21 10.04 -39.55 -0.40 -1.61 16 19 C -0.02 -0.15 9.66 -39.61 -0.38 -0.53 16 20 C -0.13 -1.45 6.51 -79.75 -0.52 -1.97 16 21 N 0.04 0.53 4.29 34.06 0.15 0.67 16 22 O -0.16 -2.22 18.95 -29.46 -0.56 -2.77 16 23 O -0.18 -2.60 16.75 -29.46 -0.49 -3.10 16 24 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.08 1.04 7.69 -51.92 -0.40 0.64 16 28 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 29 H 0.41 5.01 6.07 -40.82 -0.25 4.76 16 30 H 0.15 1.33 6.74 -52.48 -0.35 0.97 16 31 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 32 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.14 1.03 8.01 -52.49 -0.42 0.61 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -32.84 303.42 -6.55 -39.39 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.04 Total: 2.92 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.30 Total: -4.23 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.60 Total: -32.95 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -1.52 Total: -25.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.16 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.84 -6.55 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011310707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.765 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds